RLG00000020686

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018062
Physical Location & Seq
Forward (+)
67631913 .. 67632895
983 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020686

Sequence Viewer

Length: 504 bp
ATGGCTGCAGGACCTATCCCAAAGTTTATGGTTACTGAAAATGAAATACTTATTCATAAGATTGTATGGACGCCTCATTTGCAGGAGTTTAAAGCTCTCTTGGCAGGAGCAGCGGGTCAGGAGGCAAGGTCTACTACAGACGCTGCATTGATGGCCTTGACTTCTGCTGTTGGCTTAGCAGCAAGTCAAGGTGGAGAGTTCCTCGAAATAGAAGGAGAGAATGAAACTACGTTCTCCATGGTCACAGGCCAGATCCCTCCATCAGATGAAGTGACAAAGGAGCTTCTCTTTAGGTGCCGAAGGGAGCTGCTGAATTTCAGAAGCGTGGAGTTTCGCCATGTGAAACCTGACACCAATGAGGCGGCCAACCACCTGGCCAGAATGGCCATGGAGACGGAGGAGAGCTGGTTTTATGCAGACAACCCTCCACCTGAAATAGCTGCAATTCTGGATGCTGATGTCAATGGTCGTTATGTGCCATGGGAGAGTCCGAGCAATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

168

Amino Acids

18.44

Weight (kDa)

4.68

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 36 - 129 2e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018062)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g39290 FvH4_6g39290 FvH4_6g39290
rosa_chinensis RchiOBHm_Chr2g0153211
rosa_laevigata RLG00000020686
rosa_roxburghii Rroxscaffold_2G00095110
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500500 Rh2BG511900 Rh2CG486700 Rh2DG523900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 294
AccI GTMKAC 1 cut(s) 131
AciI CCGC 2 cut(s) 113, 362
AclWI GGATC 1 cut(s) 247
AcoI YGGCCR 3 cut(s) 363, 375, 384
AcsI RAATTY 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 71
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 5 cut(s) 95, 283, 307, 405, 440
AluI AGCT 5 cut(s) 95, 283, 307, 405, 440
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 1 cut(s) 247
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 5 cut(s) 153, 247, 363, 375, 384
ApeKI GCWGC 6 cut(s) 5, 110, 143, 179, 307, 440
ApoI RAATTY 1 cut(s) 313
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AspS9I GGNCC 1 cut(s) 11
AvaII GGWCC 1 cut(s) 11
BalI TGGCCA 2 cut(s) 377, 386
BanI GGYRCC 1 cut(s) 294
BbvI GCAGC 5 cut(s) 122, 130, 191, 294, 427
BccI CCATC 2 cut(s) 145, 268
BciT130I CCWGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 386
BfmI CTRYAG 2 cut(s) 6, 135
BglI GCCNNNNNGGC 1 cut(s) 383
BisI GCNGC 7 cut(s) 6, 111, 144, 180, 308, 363, 441
BlpI GCTNAGC 1 cut(s) 175
BlsI GCNGC 7 cut(s) 7, 112, 145, 181, 309, 364, 442
Bme1390I CCNGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 186, 218
Bpu1102I GCTNAGC 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 3 cut(s) 237, 387, 479
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 392, 422
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 3 cut(s) 237, 387, 479
BseGI GGATG 1 cut(s) 457
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 5 cut(s) 122, 130, 191, 294, 427
BshFI GGCC 5 cut(s) 155, 249, 365, 377, 386
BshNI GGYRCC 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 386
BsmBI CGTCTC 1 cut(s) 386
BsnI GGCC 5 cut(s) 155, 249, 365, 377, 386
Bsp143I GATC 1 cut(s) 252
Bsp1720I GCTNAGC 1 cut(s) 175
Bsp19I CCATGG 3 cut(s) 237, 387, 479
BspACI CCGC 2 cut(s) 113, 362
BspANI GGCC 5 cut(s) 155, 249, 365, 377, 386
BspLI GGNNCC 1 cut(s) 296
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 294
BssECI CCNNGG 3 cut(s) 237, 387, 479
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 3 cut(s) 237, 387, 479
Bst2UI CCWGG 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 175
BstDSI CCRYGG 3 cut(s) 237, 387, 479
BstF5I GGATG 1 cut(s) 457
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 5 cut(s) 79, 101, 110, 152, 383
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 2 cut(s) 6, 135
BstV1I GCAGC 5 cut(s) 122, 130, 191, 294, 427
BstX2I RGATCY 1 cut(s) 252
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 1 cut(s) 252
BsuRI GGCC 5 cut(s) 155, 249, 365, 377, 386
BtgI CCRYGG 3 cut(s) 237, 387, 479
BtsCI GGATG 1 cut(s) 457
CaiI CAGNNNCTG 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 2 cut(s) 79, 149
CviAII CATG 4 cut(s) 238, 338, 388, 480
DdeI CTNAG 1 cut(s) 175
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
DraI TTTAAA 1 cut(s) 91
EaeI YGGCCR 3 cut(s) 363, 375, 384
Eco130I CCWWGG 3 cut(s) 237, 387, 479
Eco47I GGWCC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 3 cut(s) 237, 387, 479
ErhI CCWWGG 3 cut(s) 237, 387, 479
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 4 cut(s) 241, 341, 391, 483
FaiI YATR 9 cut(s) 29, 57, 67, 239, 339, 389, 414, 474, 481
FatI CATG 4 cut(s) 237, 337, 387, 479
FauI CCCGC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 131
Fnu4HI GCNGC 7 cut(s) 6, 111, 144, 180, 308, 363, 441
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 7 cut(s) 6, 111, 144, 180, 308, 363, 441
GluI GCNGC 7 cut(s) 6, 111, 144, 180, 308, 363, 441
HaeIII GGCC 5 cut(s) 155, 249, 365, 377, 386
HgaI GACGC 2 cut(s) 79, 149
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 4 cut(s) 241, 341, 391, 483
HinfI GANTC 1 cut(s) 487
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 3 cut(s) 265, 320, 492
Hpy188III TCNNGA 2 cut(s) 119, 449
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 206, 294
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 5 cut(s) 8, 82, 146, 416, 443
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 101, 110, 152, 383
HpyF3I CTNAG 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 4 cut(s) 241, 341, 391, 483
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 107, 280, 304
Lsp1109I GCAGC 5 cut(s) 122, 130, 191, 294, 427
LweI GCATC 1 cut(s) 442
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 3 cut(s) 31, 241, 271
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MflI RGATCY 1 cut(s) 252
MlsI TGGCCA 2 cut(s) 377, 386
MluCI AATT 2 cut(s) 313, 444
MluNI TGGCCA 2 cut(s) 377, 386
MlyI GAGTC 1 cut(s) 496
MnlI CCTC 7 cut(s) 84, 115, 212, 267, 352, 391, 435
Mox20I TGGCCA 2 cut(s) 377, 386
MscI TGGCCA 2 cut(s) 377, 386
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 2 cut(s) 377, 386
MspA1I CMGCKG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MwoI GCNNNNNNNGC 5 cut(s) 79, 101, 110, 152, 383
NcoI CCATGG 3 cut(s) 237, 387, 479
NdeII GATC 1 cut(s) 252
NlaIII CATG 4 cut(s) 241, 341, 391, 483
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 2 cut(s) 241, 271
PkrI GCNGC 7 cut(s) 7, 112, 145, 181, 309, 364, 442
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PpuMI RGGWCCY 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 11
PspPPI RGGWCCY 1 cut(s) 11
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 252
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 7 cut(s) 6, 111, 144, 180, 308, 363, 441
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 374
SfaNI GCATC 1 cut(s) 442
SfcI CTRYAG 2 cut(s) 6, 135
SfiI GGCCNNNNNGGCC 1 cut(s) 383
SinI GGWCC 1 cut(s) 11
Sse9I AATT 2 cut(s) 313, 444
SsiI CCGC 2 cut(s) 113, 362
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 3 cut(s) 237, 387, 479
TaiI ACGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 313, 444
TauI GCSGC 1 cut(s) 365
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 2 cut(s) 241, 271
TseI GCWGC 6 cut(s) 5, 110, 143, 179, 307, 440
Tsp45I GTSAC 2 cut(s) 241, 271
TspDTI ATGAA 4 cut(s) 44, 57, 237, 282
TspGWI ACGGA 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 1 cut(s) 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.