Rh2BG511900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018062
Physical Location & Seq
Forward (+)
71989005 .. 71992731
3727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG511900.1

Sequence Viewer

Length: 354 bp
ATGGCCTTGACTGCTGCTGTTGGCTTAGCAGTAAGTCAAGGTGGAGACTTTCTCAAAATAGAGGGAGAGAATGAAACTACGTTCTCCTTGGTCACAGGCCAGATCCCTCCATCAGATGAACTGACAAGGAAGCTTATGTTTAGGTGCCTAAGGGAGGTGCAGAATTTCAGAAGGGTGGAGTTTCGCCATGTGAAACCTGACACCAATGAGGCGGCCAACCACCTAGCTGGAATGGCCATGGAGACGGAGGAGAGCTGGTTTTATGCAGACAACCCTCTACCTGAAGTAGCTGCAATTCTGGATGCTGATGTCAATGGTCGTTATGTGCTATGGGAGCATCCTAGCAATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

117

Amino Acids

13.11

Weight (kDa)

4.74

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 79 4e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018062)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g39290 FvH4_6g39290 FvH4_6g39290
rosa_chinensis RchiOBHm_Chr2g0153211
rosa_laevigata RLG00000020686
rosa_roxburghii Rroxscaffold_2G00095110
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500500 Rh2BG511900 Rh2CG486700 Rh2DG523900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 144
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 2 cut(s) 213, 234
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 154
AluBI AGCT 4 cut(s) 133, 227, 255, 290
AluI AGCT 4 cut(s) 133, 227, 255, 290
Alw26I GTCTC 2 cut(s) 39, 236
AlwI GGATC 1 cut(s) 97
AoxI GGCC 4 cut(s) 3, 97, 213, 234
ApeKI GCWGC 2 cut(s) 14, 290
ApoI RAATTY 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 149
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 39, 236
BfaI CTAG 2 cut(s) 224, 342
BisI GCNGC 3 cut(s) 15, 213, 291
BlpI GCTNAGC 1 cut(s) 25
BlsI GCNGC 3 cut(s) 16, 214, 292
BmiI GGNNCC 1 cut(s) 146
BmsI GCATC 2 cut(s) 292, 346
BplI GAGNNNNNCTC 2 cut(s) 36, 68
Bpu1102I GCTNAGC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 87, 237
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse21I CCTNAGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 87, 237
BseGI GGATG 2 cut(s) 307, 337
BseLI CCNNNNNNNGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 179
BshFI GGCC 4 cut(s) 5, 99, 215, 236
BshNI GGYRCC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 39, 236
BsmBI CGTCTC 1 cut(s) 236
BsnI GGCC 4 cut(s) 5, 99, 215, 236
Bsp143I GATC 1 cut(s) 102
Bsp1720I GCTNAGC 1 cut(s) 25
Bsp19I CCATGG 1 cut(s) 237
BspACI CCGC 1 cut(s) 212
BspANI GGCC 4 cut(s) 5, 99, 215, 236
BspLI GGNNCC 1 cut(s) 146
BspPI GGATC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 87, 237
BssMI GATC 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 87, 237
BstDEI CTNAG 2 cut(s) 25, 149
BstDSI CCRYGG 1 cut(s) 237
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 307, 337
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 39, 236
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 3 cut(s) 11, 233, 334
BstV1I GCAGC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 149
BsuRI GGCC 4 cut(s) 5, 99, 215, 236
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 307, 337
CviAII CATG 2 cut(s) 188, 238
CviJI RGCY 9 cut(s) 5, 24, 99, 133, 215, 227, 236, 255, 290
CviKI_1 RGCY 9 cut(s) 5, 24, 99, 133, 215, 227, 236, 255, 290
DdeI CTNAG 2 cut(s) 25, 149
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
EaeI YGGCCR 2 cut(s) 213, 234
Eco130I CCWWGG 2 cut(s) 87, 237
Eco57I CTGAAG 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoT14I CCWWGG 2 cut(s) 87, 237
ErhI CCWWGG 2 cut(s) 87, 237
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 2 cut(s) 191, 241
FaiI YATR 6 cut(s) 137, 189, 239, 264, 324, 331
FatI CATG 2 cut(s) 187, 237
Fnu4HI GCNGC 3 cut(s) 15, 213, 291
FokI GGATG 2 cut(s) 314, 324
Fsp4HI GCNGC 3 cut(s) 15, 213, 291
FspBI CTAG 2 cut(s) 224, 342
GluI GCNGC 3 cut(s) 15, 213, 291
HaeIII GGCC 4 cut(s) 5, 99, 215, 236
Hin1II CATG 2 cut(s) 191, 241
HindIII AAGCTT 1 cut(s) 131
Hpy188I TCNGA 2 cut(s) 115, 170
Hpy188III TCNNGA 1 cut(s) 299
HpyAV CCTTC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 160, 266, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 233, 334
HpyF3I CTNAG 2 cut(s) 25, 149
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 2 cut(s) 191, 241
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 7 cut(s) 81, 113, 210, 213, 241, 284, 294
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 2 cut(s) 292, 346
MaeI CTAG 2 cut(s) 224, 342
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 91
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MflI RGATCY 1 cut(s) 102
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 2 cut(s) 163, 294
MluNI TGGCCA 1 cut(s) 236
MnlI CCTC 6 cut(s) 55, 117, 148, 202, 241, 285
Mox20I TGGCCA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 236
Msp20I TGGCCA 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 11, 233, 334
NcoI CCATGG 1 cut(s) 237
NdeII GATC 1 cut(s) 102
NlaIII CATG 2 cut(s) 191, 241
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 91
PkrI GCNGC 3 cut(s) 16, 214, 292
PspN4I GGNNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 102
SatI GCNGC 3 cut(s) 15, 213, 291
Sau3AI GATC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 292, 346
Sse9I AATT 2 cut(s) 163, 294
SsiI CCGC 1 cut(s) 212
SspMI CTAG 2 cut(s) 224, 342
StyI CCWWGG 2 cut(s) 87, 237
TaiI ACGT 1 cut(s) 83
TasI AATT 2 cut(s) 163, 294
TauI GCSGC 1 cut(s) 215
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 14, 290
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 87, 132
TspGWI ACGGA 1 cut(s) 260
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 163
XspI CTAG 2 cut(s) 224, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.