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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G48310 AT5G48310 |
| fragaria_vesca | FvH4_6g40180 FvH4_6g40180 FvH4_6g40180 FvH4_6g40180 |
| malus_domestica | MD09G1134500.v1.1 MD17G1123400.v1.1 |
| prunus_persica | Prupe.3G192200_v2.0.a1 Prupe.3G192200_v2.0.a1 Prupe.3G192200_v2.0.a1 |
| pyrus_communis | pycom09g05570 |
| rosa_chinensis | RchiOBHm_Chr2g0155201 |
| rosa_laevigata | RLG00000020825 |
| rosa_multiflora | Rmu_sc0004976.1_g000039 |
| rosa_roxburghii | Rroxscaffold_2G00093880 |
| rosa_rugosa | Rorug02G0445900 |
| rosa_samantha | Rh2AG512200 Rh2BG522900 Rh2CG497200 Rh2DG532600 |
| rosa_wichuraiana | Rw2G042080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 266, 2059 |
| AatII | GACGTC | 1 cut(s) | 270 |
| Acc36I | ACCTGC | 1 cut(s) | 2607 |
| AccB1I | GGYRCC | 2 cut(s) | 994, 2626 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2636 |
| AccBSI | CCGCTC | 1 cut(s) | 1656 |
| AccI | GTMKAC | 4 cut(s) | 270, 952, 2097, 2538 |
| AccII | CGCG | 1 cut(s) | 218 |
| AclWI | GGATC | 4 cut(s) | 47, 58, 2320, 3388 |
| AcsI | RAATTY | 8 cut(s) | 1116, 1512, 1772, 2281, 2307, 2930, 2952, 3338 |
| AcuI | CTGAAG | 3 cut(s) | 1220, 1347, 2247 |
| AcyI | GRCGYC | 1 cut(s) | 267 |
| AflIII | ACRYGT | 2 cut(s) | 1261, 2455 |
| AhlI | ACTAGT | 4 cut(s) | 797, 1097, 1273, 1541 |
| AjiI | CACGTC | 1 cut(s) | 1831 |
| AjnI | CCWGG | 4 cut(s) | 448, 920, 1904, 2429 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 709, 741, 1748, 1780 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1498, 1530, 3054, 3086 |
| Alw21I | GWGCWC | 2 cut(s) | 1208, 1714 |
| Alw26I | GTCTC | 3 cut(s) | 307, 1664, 2192 |
| AlwI | GGATC | 4 cut(s) | 47, 58, 2320, 3388 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1247, 2063, 2878 |
| Ama87I | CYCGRG | 2 cut(s) | 1068, 2924 |
| AoxI | GGCC | 7 cut(s) | 1408, 1562, 1658, 1902, 2432, 2735, 3000 |
| ApaI | GGGCCC | 1 cut(s) | 1412 |
| ApoI | RAATTY | 8 cut(s) | 1116, 1512, 1772, 2281, 2307, 2930, 2952, 3338 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 275, 307, 1957, 1989 |
| AspLEI | GCGC | 3 cut(s) | 220, 340, 646 |
| AsuC2I | CCSGG | 1 cut(s) | 1413 |
| AsuHPI | GGTGA | 5 cut(s) | 148, 605, 773, 1433, 3059 |
| AsuII | TTCGAA | 2 cut(s) | 565, 1030 |
| AvaI | CYCGRG | 2 cut(s) | 1068, 2924 |
| AvaII | GGWCC | 6 cut(s) | 883, 1495, 1748, 2444, 2869, 3205 |
| BaeGI | GKGCMC | 1 cut(s) | 1412 |
| BanI | GGYRCC | 2 cut(s) | 994, 2626 |
| BanII | GRGCYC | 2 cut(s) | 18, 1412 |
| BbsI | GAAGAC | 6 cut(s) | 203, 282, 1296, 1426, 2893, 2988 |
| Bbv12I | GWGCWC | 2 cut(s) | 1208, 1714 |
| BbvCI | CCTCAGC | 1 cut(s) | 3201 |
| BccI | CCATC | 5 cut(s) | 1131, 2446, 2727, 2852, 3185 |
| BceAI | ACGGC | 2 cut(s) | 2178, 2750 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3519, 3553 |
| BciT130I | CCWGG | 4 cut(s) | 450, 922, 1906, 2431 |
| BciVI | GTATCC | 1 cut(s) | 3508 |
| BclI | TGATCA | 1 cut(s) | 1579 |
| BcnI | CCSGG | 1 cut(s) | 1413 |
| BcoDI | GTCTC | 3 cut(s) | 307, 1664, 2192 |
| BcuI | ACTAGT | 4 cut(s) | 797, 1097, 1273, 1541 |
| BfmI | CTRYAG | 3 cut(s) | 2064, 2085, 3528 |
| BfoI | RGCGCY | 1 cut(s) | 341 |
| BfuAI | ACCTGC | 1 cut(s) | 2607 |
| BfuI | GTATCC | 1 cut(s) | 3508 |
| Bme1390I | CCNGG | 5 cut(s) | 450, 922, 1413, 1906, 2431 |
| Bme18I | GGWCC | 6 cut(s) | 883, 1495, 1748, 2444, 2869, 3205 |
| BmeT110I | CYCGRG | 2 cut(s) | 1068, 2924 |
| BmgBI | CACGTC | 1 cut(s) | 1831 |
| BmiI | GGNNCC | 9 cut(s) | 240, 447, 996, 1410, 1411, 2435, 2498, 2628, 3158 |
| BmrFI | CCNGG | 5 cut(s) | 450, 922, 1413, 1906, 2431 |
| BmrI | ACTGGG | 1 cut(s) | 2343 |
| BmsI | GCATC | 3 cut(s) | 2119, 3523, 3545 |
| BmuI | ACTGGG | 1 cut(s) | 2343 |
| BpiI | GAAGAC | 6 cut(s) | 203, 282, 1296, 1426, 2893, 2988 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 83, 115, 104, 136, 2688, 2720 |
| BpmI | CTGGAG | 4 cut(s) | 870, 2040, 2658, 2822 |
| Bpu10I | CCTNAGC | 2 cut(s) | 251, 3201 |
| Bpu14I | TTCGAA | 2 cut(s) | 565, 1030 |
| BpuEI | CTTGAG | 3 cut(s) | 179, 1756, 2216 |
| BpuMI | CCSGG | 1 cut(s) | 1413 |
| Bsa29I | ATCGAT | 1 cut(s) | 2731 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3287 |
| BsaHI | GRCGYC | 1 cut(s) | 267 |
| BsaI | GGTCTC | 1 cut(s) | 307 |
| BsaJI | CCNNGG | 8 cut(s) | 449, 740, 1069, 1368, 1411, 1498, 1751, 2630 |
| BsaWI | WCCGGW | 5 cut(s) | 67, 206, 305, 2181, 2441 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 385, 415, 2666, 2696 |
| Bse118I | RCCGGY | 1 cut(s) | 2071 |
| Bse1I | ACTGG | 5 cut(s) | 906, 1661, 2349, 2522, 2805 |
| Bse3DI | GCAATG | 1 cut(s) | 718 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3287 |
| BseBI | CCWGG | 4 cut(s) | 450, 922, 1906, 2431 |
| BseCI | ATCGAT | 1 cut(s) | 2731 |
| BseDI | CCNNGG | 8 cut(s) | 449, 740, 1069, 1368, 1411, 1498, 1751, 2630 |
| BseGI | GGATG | 7 cut(s) | 612, 790, 1843, 2134, 2438, 2844, 3412 |
| BseJI | GATNNNNATC | 1 cut(s) | 3287 |
| BseMI | GCAATG | 1 cut(s) | 718 |
| BseMII | CTCAG | 6 cut(s) | 242, 468, 981, 1118, 1805, 3192 |
| BseNI | ACTGG | 5 cut(s) | 906, 1661, 2349, 2522, 2805 |
| BseRI | GAGGAG | 7 cut(s) | 112, 160, 180, 377, 380, 625, 3465 |
| BseSI | GKGCMC | 1 cut(s) | 1412 |
| BseYI | CCCAGC | 1 cut(s) | 3234 |
| BsgI | GTGCAG | 3 cut(s) | 970, 2546, 2951 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshFI | GGCC | 7 cut(s) | 1410, 1564, 1660, 1904, 2434, 2737, 3002 |
| BshNI | GGYRCC | 2 cut(s) | 994, 2626 |
| BshVI | ATCGAT | 1 cut(s) | 2731 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1208, 1714 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1068, 2924 |
| BsiSI | CCGG | 8 cut(s) | 68, 89, 207, 306, 1413, 2072, 2182, 2442 |
| BslFI | GGGAC | 5 cut(s) | 127, 592, 1874, 2897, 3336 |
| BsmAI | GTCTC | 3 cut(s) | 307, 1664, 2192 |
| BsmFI | GGGAC | 5 cut(s) | 127, 592, 1874, 2897, 3336 |
| BsmI | GAATGC | 4 cut(s) | 713, 1111, 2417, 3222 |
| BsnI | GGCC | 7 cut(s) | 1410, 1564, 1660, 1904, 2434, 2737, 3002 |
| Bso31I | GGTCTC | 1 cut(s) | 307 |
| BsoBI | CYCGRG | 2 cut(s) | 1068, 2924 |
| Bsp119I | TTCGAA | 2 cut(s) | 565, 1030 |
| Bsp120I | GGGCCC | 1 cut(s) | 1408 |
| Bsp1286I | GDGCHC | 4 cut(s) | 18, 1208, 1412, 1714 |
| Bsp1407I | TGTACA | 2 cut(s) | 1230, 2288 |
| Bsp143I | GATC | 8 cut(s) | 39, 50, 1579, 1684, 2325, 2359, 3380, 3497 |
| Bsp19I | CCATGG | 2 cut(s) | 1751, 2630 |
| BspANI | GGCC | 7 cut(s) | 1410, 1564, 1660, 1904, 2434, 2737, 3002 |
| BspCNI | CTCAG | 6 cut(s) | 243, 469, 982, 1119, 1806, 3193 |
| BspDI | ATCGAT | 1 cut(s) | 2731 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspLI | GGNNCC | 9 cut(s) | 240, 447, 996, 1410, 1411, 2435, 2498, 2628, 3158 |
| BspMAI | CTGCAG | 3 cut(s) | 2068, 2089, 3532 |
| BspMI | ACCTGC | 1 cut(s) | 2607 |
| BspPI | GGATC | 4 cut(s) | 47, 58, 2320, 3388 |
| BspQI | GCTCTTC | 2 cut(s) | 189, 1196 |
| BspT104I | TTCGAA | 2 cut(s) | 565, 1030 |
| BspT107I | GGYRCC | 2 cut(s) | 994, 2626 |
| BspTNI | GGTCTC | 1 cut(s) | 307 |
| BsrBI | CCGCTC | 1 cut(s) | 1656 |
| BsrDI | GCAATG | 1 cut(s) | 718 |
| BsrFI | RCCGGY | 1 cut(s) | 2071 |
| BsrGI | TGTACA | 2 cut(s) | 1230, 2288 |
| BsrI | ACTGG | 5 cut(s) | 906, 1661, 2349, 2522, 2805 |
| BssAI | RCCGGY | 1 cut(s) | 2071 |
| BssECI | CCNNGG | 8 cut(s) | 449, 740, 1069, 1368, 1411, 1498, 1751, 2630 |
| BssMI | GATC | 8 cut(s) | 39, 50, 1579, 1684, 2325, 2359, 3380, 3497 |
| BssNAI | GTATAC | 1 cut(s) | 953 |
| BssNI | GRCGYC | 1 cut(s) | 267 |
| BssT1I | CCWWGG | 4 cut(s) | 740, 1498, 1751, 2630 |
| Bst1107I | GTATAC | 1 cut(s) | 953 |
| Bst2UI | CCWGG | 4 cut(s) | 450, 922, 1906, 2431 |
| Bst4CI | ACNGT | 7 cut(s) | 865, 2125, 2972, 3042, 3070, 3112, 3146 |
| Bst6I | CTCTTC | 7 cut(s) | 158, 189, 354, 1196, 1323, 1467, 2942 |
| BstACI | GRCGYC | 1 cut(s) | 267 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2423, 3436 |
| BstAUI | TGTACA | 2 cut(s) | 1230, 2288 |
| BstBI | TTCGAA | 2 cut(s) | 565, 1030 |
| BstC8I | GCNNGC | 7 cut(s) | 870, 874, 1658, 1710, 3105, 3138, 3222 |
| BstDEI | CTNAG | 7 cut(s) | 251, 477, 990, 1127, 1814, 1864, 3201 |
| BstDSI | CCRYGG | 2 cut(s) | 1751, 2630 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2612 |
| BstF5I | GGATG | 7 cut(s) | 612, 790, 1843, 2134, 2438, 2844, 3412 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstH2I | RGCGCY | 1 cut(s) | 341 |
| BstHHI | GCGC | 3 cut(s) | 220, 340, 646 |
| BstKTI | GATC | 8 cut(s) | 42, 53, 1582, 1687, 2328, 2362, 3383, 3500 |
| BstMAI | GTCTC | 3 cut(s) | 307, 1664, 2192 |
| BstMBI | GATC | 8 cut(s) | 39, 50, 1579, 1684, 2325, 2359, 3380, 3497 |
| BstNI | CCWGG | 4 cut(s) | 450, 922, 1906, 2431 |
| BstNSI | RCATGY | 4 cut(s) | 951, 1265, 2194, 2459 |
| BstSCI | CCNGG | 5 cut(s) | 448, 920, 1411, 1904, 2429 |
| BstSFI | CTRYAG | 3 cut(s) | 2064, 2085, 3528 |
| BstSLI | GKGCMC | 1 cut(s) | 1412 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstV2I | GAAGAC | 6 cut(s) | 203, 282, 1296, 1426, 2893, 2988 |
| BstX2I | RGATCY | 2 cut(s) | 50, 2325 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 880, 1758 |
| BstYI | RGATCY | 2 cut(s) | 50, 2325 |
| BstZ17I | GTATAC | 1 cut(s) | 953 |
| Bsu15I | ATCGAT | 1 cut(s) | 2731 |
| BsuI | GTATCC | 1 cut(s) | 3508 |
| BsuRI | GGCC | 7 cut(s) | 1410, 1564, 1660, 1904, 2434, 2737, 3002 |
| BsuTUI | ATCGAT | 1 cut(s) | 2731 |
| BtgI | CCRYGG | 2 cut(s) | 1751, 2630 |
| BtrI | CACGTC | 1 cut(s) | 1831 |
| BtsCI | GGATG | 7 cut(s) | 612, 790, 1843, 2134, 2438, 2844, 3412 |
| BtsI | GCAGTG | 1 cut(s) | 2373 |
| BtsIMutI | CAGTG | 7 cut(s) | 913, 987, 2373, 2529, 2798, 2968, 3489 |
| BveI | ACCTGC | 1 cut(s) | 2607 |
| Cac8I | GCNNGC | 7 cut(s) | 870, 874, 1658, 1710, 3105, 3138, 3222 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1247, 2063, 2878 |
| CfoI | GCGC | 3 cut(s) | 220, 340, 646 |
| Cfr10I | RCCGGY | 1 cut(s) | 2071 |
| ClaI | ATCGAT | 1 cut(s) | 2731 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 700, 735, 1122, 1157 |
| DdeI | CTNAG | 7 cut(s) | 251, 477, 990, 1127, 1814, 1864, 3201 |
| DpnI | GATC | 8 cut(s) | 41, 52, 1581, 1686, 2327, 2361, 3382, 3499 |
| DpnII | GATC | 8 cut(s) | 39, 50, 1579, 1684, 2325, 2359, 3380, 3497 |
| DraI | TTTAAA | 1 cut(s) | 2937 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 266, 2059 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 266, 2059 |
| Eam1104I | CTCTTC | 7 cut(s) | 158, 189, 354, 1196, 1323, 1467, 2942 |
| EarI | CTCTTC | 7 cut(s) | 158, 189, 354, 1196, 1323, 1467, 2942 |
| Eco130I | CCWWGG | 4 cut(s) | 740, 1498, 1751, 2630 |
| Eco24I | GRGCYC | 2 cut(s) | 18, 1412 |
| Eco31I | GGTCTC | 1 cut(s) | 307 |
| Eco32I | GATATC | 4 cut(s) | 1820, 2116, 2821, 3466 |
| Eco47I | GGWCC | 6 cut(s) | 883, 1495, 1748, 2444, 2869, 3205 |
| Eco57I | CTGAAG | 3 cut(s) | 1220, 1347, 2247 |
| Eco88I | CYCGRG | 2 cut(s) | 1068, 2924 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2612 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1409 |
| EcoRI | GAATTC | 2 cut(s) | 1512, 2952 |
| EcoRII | CCWGG | 4 cut(s) | 448, 920, 1904, 2429 |
| EcoRV | GATATC | 4 cut(s) | 1820, 2116, 2821, 3466 |
| EcoT14I | CCWWGG | 4 cut(s) | 740, 1498, 1751, 2630 |
| EcoT22I | ATGCAT | 2 cut(s) | 1346, 3538 |
| EcoT38I | GRGCYC | 2 cut(s) | 18, 1412 |
| ErhI | CCWWGG | 4 cut(s) | 740, 1498, 1751, 2630 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1320, 1352, 2008, 2040, 2220, 2252 |
| FaqI | GGGAC | 5 cut(s) | 127, 592, 1874, 2897, 3336 |
| FauI | CCCGC | 1 cut(s) | 1649 |
| FbaI | TGATCA | 1 cut(s) | 1579 |
| FblI | GTMKAC | 4 cut(s) | 270, 952, 2097, 2538 |
| FokI | GGATG | 7 cut(s) | 619, 797, 1850, 2141, 2425, 2831, 3419 |
| FriOI | GRGCYC | 2 cut(s) | 18, 1412 |
| GlaI | GCGC | 3 cut(s) | 219, 339, 645 |
| GsaI | CCCAGC | 1 cut(s) | 3238 |
| GsuI | CTGGAG | 4 cut(s) | 870, 2040, 2658, 2822 |
| HaeII | RGCGCY | 1 cut(s) | 341 |
| HaeIII | GGCC | 7 cut(s) | 1410, 1564, 1660, 1904, 2434, 2737, 3002 |
| HapII | CCGG | 8 cut(s) | 68, 89, 207, 306, 1413, 2072, 2182, 2442 |
| HhaI | GCGC | 3 cut(s) | 220, 340, 646 |
| Hin1I | GRCGYC | 1 cut(s) | 267 |
| Hin6I | GCGC | 3 cut(s) | 218, 338, 644 |
| HinP1I | GCGC | 3 cut(s) | 218, 338, 644 |
| HincII | GTYRAC | 2 cut(s) | 271, 3244 |
| HindII | GTYRAC | 2 cut(s) | 271, 3244 |
| HindIII | AAGCTT | 2 cut(s) | 810, 1172 |
| HpaII | CCGG | 8 cut(s) | 68, 89, 207, 306, 1413, 2072, 2182, 2442 |
| HphI | GGTGA | 5 cut(s) | 148, 605, 773, 1433, 3059 |
| Hpy99I | CGWCG | 6 cut(s) | 23, 247, 272, 275, 346, 839 |
| HpyCH4III | ACNGT | 7 cut(s) | 865, 2125, 2972, 3042, 3070, 3112, 3146 |
| HpyCH4IV | ACGT | 2 cut(s) | 267, 1830 |
| HpyF3I | CTNAG | 7 cut(s) | 251, 477, 990, 1127, 1814, 1864, 3201 |
| HpySE526I | ACGT | 2 cut(s) | 267, 1830 |
| Hsp92I | GRCGYC | 1 cut(s) | 267 |
| HspAI | GCGC | 3 cut(s) | 218, 338, 644 |
| Ksp22I | TGATCA | 1 cut(s) | 1579 |
| Kzo9I | GATC | 8 cut(s) | 39, 50, 1579, 1684, 2325, 2359, 3380, 3497 |
| LguI | GCTCTTC | 2 cut(s) | 189, 1196 |
| LmnI | GCTCC | 5 cut(s) | 70, 104, 244, 2086, 3162 |
| LweI | GCATC | 3 cut(s) | 2119, 3523, 3545 |
| MaeII | ACGT | 2 cut(s) | 267, 1830 |
| MaeIII | GTNAC | 3 cut(s) | 1318, 1332, 2896 |
| MalI | GATC | 8 cut(s) | 41, 52, 1581, 1686, 2327, 2361, 3382, 3499 |
| MbiI | CCGCTC | 1 cut(s) | 1656 |
| MboI | GATC | 8 cut(s) | 39, 50, 1579, 1684, 2325, 2359, 3380, 3497 |
| MfeI | CAATTG | 2 cut(s) | 2355, 2478 |
| MflI | RGATCY | 2 cut(s) | 50, 2325 |
| MhlI | GDGCHC | 4 cut(s) | 18, 1208, 1412, 1714 |
| MmeI | TCCRAC | 9 cut(s) | 150, 198, 1126, 1282, 1375, 1674, 1746, 1874, 3279 |
| Mph1103I | ATGCAT | 2 cut(s) | 1346, 3538 |
| MseI | TTAA | 9 cut(s) | 434, 495, 1298, 1650, 1899, 2595, 2859, 2936, 2990 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1339, 1575, 1756, 1838, 2460 |
| MspA1I | CMGCKG | 1 cut(s) | 544 |
| MspI | CCGG | 8 cut(s) | 68, 89, 207, 306, 1413, 2072, 2182, 2442 |
| MspR9I | CCNGG | 5 cut(s) | 450, 922, 1413, 1906, 2431 |
| MunI | CAATTG | 2 cut(s) | 2355, 2478 |
| Mva1269I | GAATGC | 4 cut(s) | 713, 1111, 2417, 3222 |
| MvaI | CCWGG | 4 cut(s) | 450, 922, 1906, 2431 |
| MvnI | CGCG | 1 cut(s) | 218 |
| NciI | CCSGG | 1 cut(s) | 1413 |
| NcoI | CCATGG | 2 cut(s) | 1751, 2630 |
| NdeII | GATC | 8 cut(s) | 39, 50, 1579, 1684, 2325, 2359, 3380, 3497 |
| NlaIV | GGNNCC | 9 cut(s) | 240, 447, 996, 1410, 1411, 2435, 2498, 2628, 3158 |
| NmeAIII | GCCGAG | 1 cut(s) | 136 |
| NmuCI | GTSAC | 1 cut(s) | 1332 |
| NsiI | ATGCAT | 2 cut(s) | 1346, 3538 |
| NspI | RCATGY | 4 cut(s) | 951, 1265, 2194, 2459 |
| NspV | TTCGAA | 2 cut(s) | 565, 1030 |
| PciI | ACATGT | 2 cut(s) | 1261, 2455 |
| PciSI | GCTCTTC | 2 cut(s) | 189, 1196 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 276, 338 |
| PctI | GAATGC | 4 cut(s) | 713, 1111, 2417, 3222 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2636 |
| PscI | ACATGT | 2 cut(s) | 1261, 2455 |
| Psp6I | CCWGG | 4 cut(s) | 448, 920, 1904, 2429 |
| PspFI | CCCAGC | 1 cut(s) | 3234 |
| PspGI | CCWGG | 4 cut(s) | 448, 920, 1904, 2429 |
| PspN4I | GGNNCC | 9 cut(s) | 240, 447, 996, 1410, 1411, 2435, 2498, 2628, 3158 |
| PspOMI | GGGCCC | 1 cut(s) | 1408 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 784, 816 |
| PstI | CTGCAG | 3 cut(s) | 2068, 2089, 3532 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1247, 2063, 2878 |
| PsuI | RGATCY | 2 cut(s) | 50, 2325 |
| PvuII | CAGCTG | 1 cut(s) | 544 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1339, 1575, 1756, 1838, 2460 |
| SalI | GTCGAC | 1 cut(s) | 269 |
| SapI | GCTCTTC | 2 cut(s) | 189, 1196 |
| SaqAI | TTAA | 9 cut(s) | 434, 495, 1298, 1650, 1899, 2595, 2859, 2936, 2990 |
| Sau3AI | GATC | 8 cut(s) | 39, 50, 1579, 1684, 2325, 2359, 3380, 3497 |
| ScrFI | CCNGG | 5 cut(s) | 450, 922, 1413, 1906, 2431 |
| SduI | GDGCHC | 4 cut(s) | 18, 1208, 1412, 1714 |
| SfaNI | GCATC | 3 cut(s) | 2119, 3523, 3545 |
| SfcI | CTRYAG | 3 cut(s) | 2064, 2085, 3528 |
| SfuI | TTCGAA | 2 cut(s) | 565, 1030 |
| SgrDI | CGTCGACG | 1 cut(s) | 269 |
| SinI | GGWCC | 6 cut(s) | 883, 1495, 1748, 2444, 2869, 3205 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1339, 1575, 1756, 1838, 2460 |
| SmlI | CTYRAG | 3 cut(s) | 194, 1735, 2195 |
| SmoI | CTYRAG | 3 cut(s) | 194, 1735, 2195 |
| SpeI | ACTAGT | 4 cut(s) | 797, 1097, 1273, 1541 |
| StyD4I | CCNGG | 5 cut(s) | 448, 920, 1411, 1904, 2429 |
| StyI | CCWWGG | 4 cut(s) | 740, 1498, 1751, 2630 |
| TaaI | ACNGT | 7 cut(s) | 865, 2125, 2972, 3042, 3070, 3112, 3146 |
| TaiI | ACGT | 2 cut(s) | 270, 1833 |
| TaqII | GACCGA | 2 cut(s) | 289, 1483 |
| TatI | WGTACW | 6 cut(s) | 1230, 1619, 2089, 2288, 2341, 3087 |
| TauI | GCSGC | 7 cut(s) | 82, 85, 88, 233, 236, 239, 1397 |
| Tru1I | TTAA | 9 cut(s) | 434, 495, 1298, 1650, 1899, 2595, 2859, 2936, 2990 |
| Tru9I | TTAA | 9 cut(s) | 434, 495, 1298, 1650, 1899, 2595, 2859, 2936, 2990 |
| TscAI | CASTG | 7 cut(s) | 913, 994, 2380, 2529, 2805, 2975, 3489 |
| TseFI | GTSAC | 1 cut(s) | 1332 |
| Tsp45I | GTSAC | 1 cut(s) | 1332 |
| TspGWI | ACGGA | 5 cut(s) | 231, 359, 998, 3197, 3393 |
| TspRI | CASTG | 7 cut(s) | 913, 994, 2380, 2529, 2805, 2975, 3489 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2636 |
| VpaK11BI | GGWCC | 6 cut(s) | 883, 1495, 1748, 2444, 2869, 3205 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2612 |
| XapI | RAATTY | 8 cut(s) | 1116, 1512, 1772, 2281, 2307, 2930, 2952, 3338 |
| XbaI | TCTAGA | 1 cut(s) | 3169 |
| XceI | RCATGY | 4 cut(s) | 951, 1265, 2194, 2459 |
| XmiI | GTMKAC | 4 cut(s) | 270, 952, 2097, 2538 |
| ZraI | GACGTC | 1 cut(s) | 268 |
| Zsp2I | ATGCAT | 2 cut(s) | 1346, 3538 |