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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G48310 AT5G48310 |
| fragaria_vesca | FvH4_6g40180 FvH4_6g40180 FvH4_6g40180 FvH4_6g40180 |
| malus_domestica | MD09G1134500.v1.1 MD17G1123400.v1.1 |
| prunus_persica | Prupe.3G192200_v2.0.a1 Prupe.3G192200_v2.0.a1 Prupe.3G192200_v2.0.a1 |
| pyrus_communis | pycom09g05570 |
| rosa_chinensis | RchiOBHm_Chr2g0155201 |
| rosa_laevigata | RLG00000020825 |
| rosa_multiflora | Rmu_sc0004976.1_g000039 |
| rosa_roxburghii | Rroxscaffold_2G00093880 |
| rosa_rugosa | Rorug02G0445900 |
| rosa_samantha | Rh2AG512200 Rh2BG522900 Rh2CG497200 Rh2DG532600 |
| rosa_wichuraiana | Rw2G042080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 257, 287 |
| AatII | GACGTC | 1 cut(s) | 261 |
| Acc36I | ACCTGC | 1 cut(s) | 3114 |
| AccB1I | GGYRCC | 2 cut(s) | 1000, 2632 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2642 |
| AccBSI | CCGCTC | 2 cut(s) | 103, 1662 |
| AccI | GTMKAC | 3 cut(s) | 261, 958, 2544 |
| AccII | CGCG | 1 cut(s) | 212 |
| AclWI | GGATC | 3 cut(s) | 47, 58, 2326 |
| AcoI | YGGCCR | 1 cut(s) | 169 |
| AcuI | CTGAAG | 4 cut(s) | 136, 1226, 1353, 2253 |
| AcyI | GRCGYC | 2 cut(s) | 258, 2136 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 745, 1134, 1135, 1424, 2131, 2447, 2534, 2642, 3026 |
| AflIII | ACRYGT | 4 cut(s) | 1267, 1834, 2046, 2461 |
| AhlI | ACTAGT | 3 cut(s) | 797, 1103, 1279 |
| AjnI | CCWGG | 4 cut(s) | 454, 926, 1910, 2435 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 712, 744, 1754, 1786 |
| AleI | CACNNNNGTG | 1 cut(s) | 2538 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1504, 1536, 3060, 3092 |
| Alw21I | GWGCWC | 3 cut(s) | 1214, 1720, 2535 |
| Alw26I | GTCTC | 3 cut(s) | 304, 1670, 2198 |
| Alw44I | GTGCAC | 1 cut(s) | 2531 |
| AlwI | GGATC | 3 cut(s) | 47, 58, 2326 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 550, 1253, 2069, 2884 |
| Ama87I | CYCGRG | 2 cut(s) | 1074, 2930 |
| AoxI | GGCC | 7 cut(s) | 13, 169, 1568, 1908, 2438, 2741, 3006 |
| ApaLI | GTGCAC | 1 cut(s) | 2531 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1963, 1995, 3404, 3436 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 464 |
| AspLEI | GCGC | 3 cut(s) | 214, 649, 1416 |
| AsuC2I | CCSGG | 1 cut(s) | 1419 |
| AsuHPI | GGTGA | 7 cut(s) | 109, 608, 776, 1439, 2371, 2661, 3065 |
| AsuII | TTCGAA | 2 cut(s) | 568, 1036 |
| AvaI | CYCGRG | 2 cut(s) | 1074, 2930 |
| AvaII | GGWCC | 8 cut(s) | 55, 889, 1664, 1754, 2054, 2450, 2875, 3211 |
| BaeGI | GKGCMC | 1 cut(s) | 2535 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3370, 3403 |
| BanI | GGYRCC | 2 cut(s) | 1000, 2632 |
| BanII | GRGCYC | 1 cut(s) | 3480 |
| BbsI | GAAGAC | 2 cut(s) | 2595, 2899 |
| Bbv12I | GWGCWC | 3 cut(s) | 1214, 1720, 2535 |
| BbvCI | CCTCAGC | 2 cut(s) | 2679, 3207 |
| BccI | CCATC | 8 cut(s) | 604, 1137, 2161, 2267, 2452, 2733, 2858, 3191 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3404, 3438 |
| BciT130I | CCWGG | 4 cut(s) | 456, 928, 1912, 2437 |
| BciVI | GTATCC | 1 cut(s) | 3514 |
| BclI | TGATCA | 1 cut(s) | 1585 |
| BcnI | CCSGG | 1 cut(s) | 1419 |
| BcoDI | GTCTC | 3 cut(s) | 304, 1670, 2198 |
| BcuI | ACTAGT | 3 cut(s) | 797, 1103, 1279 |
| BfaI | CTAG | 9 cut(s) | 59, 798, 1028, 1091, 1104, 1280, 1682, 3176, 3562 |
| BfmI | CTRYAG | 4 cut(s) | 1383, 2070, 3107, 3534 |
| BfuAI | ACCTGC | 1 cut(s) | 3114 |
| BfuI | GTATCC | 1 cut(s) | 3514 |
| BmcAI | AGTACT | 2 cut(s) | 796, 2750 |
| Bme1390I | CCNGG | 5 cut(s) | 456, 928, 1419, 1912, 2437 |
| Bme18I | GGWCC | 8 cut(s) | 55, 889, 1664, 1754, 2054, 2450, 2875, 3211 |
| BmeT110I | CYCGRG | 2 cut(s) | 1074, 2930 |
| BmiI | GGNNCC | 8 cut(s) | 231, 1002, 1392, 2088, 2441, 2504, 2634, 3164 |
| BmrFI | CCNGG | 5 cut(s) | 456, 928, 1419, 1912, 2437 |
| BmrI | ACTGGG | 1 cut(s) | 2349 |
| BmsI | GCATC | 1 cut(s) | 3551 |
| BmuI | ACTGGG | 1 cut(s) | 2349 |
| BpiI | GAAGAC | 2 cut(s) | 2595, 2899 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2694, 2726 |
| BpmI | CTGGAG | 4 cut(s) | 870, 2046, 2664, 2828 |
| Bpu10I | CCTNAGC | 4 cut(s) | 242, 1318, 2679, 3207 |
| Bpu14I | TTCGAA | 2 cut(s) | 568, 1036 |
| BpuEI | CTTGAG | 2 cut(s) | 173, 2222 |
| BpuMI | CCSGG | 1 cut(s) | 1419 |
| Bsa29I | ATCGAT | 1 cut(s) | 2737 |
| BsaHI | GRCGYC | 2 cut(s) | 258, 2136 |
| BsaI | GGTCTC | 1 cut(s) | 304 |
| BsaJI | CCNNGG | 9 cut(s) | 455, 743, 996, 1075, 1133, 1417, 1504, 1757, 2636 |
| BsaWI | WCCGGW | 4 cut(s) | 67, 314, 1560, 2187 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 745, 1134, 1135, 1424, 2131, 2447, 2534, 2642, 3026 |
| Bse118I | RCCGGY | 1 cut(s) | 200 |
| Bse1I | ACTGG | 6 cut(s) | 912, 1548, 1667, 2355, 2528, 2811 |
| Bse3DI | GCAATG | 1 cut(s) | 721 |
| BseBI | CCWGG | 4 cut(s) | 456, 928, 1912, 2437 |
| BseCI | ATCGAT | 1 cut(s) | 2737 |
| BseDI | CCNNGG | 9 cut(s) | 455, 743, 996, 1075, 1133, 1417, 1504, 1757, 2636 |
| BseGI | GGATG | 4 cut(s) | 615, 1129, 1849, 2850 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 745, 1134, 1135, 1424, 2131, 2447, 2534, 2642, 3026 |
| BseMI | GCAATG | 1 cut(s) | 721 |
| BseMII | CTCAG | 7 cut(s) | 233, 471, 1365, 1811, 2670, 2759, 3198 |
| BseNI | ACTGG | 6 cut(s) | 912, 1548, 1667, 2355, 2528, 2811 |
| BseRI | GAGGAG | 1 cut(s) | 1303 |
| BseSI | GKGCMC | 1 cut(s) | 2535 |
| BseYI | CCCAGC | 1 cut(s) | 3240 |
| BsgI | GTGCAG | 2 cut(s) | 368, 976 |
| Bsh1236I | CGCG | 1 cut(s) | 212 |
| Bsh1285I | CGRYCG | 1 cut(s) | 127 |
| BshFI | GGCC | 7 cut(s) | 15, 171, 1570, 1910, 2440, 2743, 3008 |
| BshNI | GGYRCC | 2 cut(s) | 1000, 2632 |
| BshVI | ATCGAT | 1 cut(s) | 2737 |
| BsiEI | CGRYCG | 1 cut(s) | 127 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1214, 1720, 2535 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1074, 2930 |
| BsiSI | CCGG | 7 cut(s) | 68, 168, 201, 315, 1419, 1561, 2188 |
| BslFI | GGGAC | 3 cut(s) | 124, 2903, 3342 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 745, 1134, 1135, 1424, 2131, 2447, 2534, 2642, 3026 |
| BsmAI | GTCTC | 3 cut(s) | 304, 1670, 2198 |
| BsmFI | GGGAC | 3 cut(s) | 124, 2903, 3342 |
| BsmI | GAATGC | 3 cut(s) | 716, 2423, 3228 |
| BsnI | GGCC | 7 cut(s) | 15, 171, 1570, 1910, 2440, 2743, 3008 |
| Bso31I | GGTCTC | 1 cut(s) | 304 |
| BsoBI | CYCGRG | 2 cut(s) | 1074, 2930 |
| Bsp119I | TTCGAA | 2 cut(s) | 568, 1036 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1214, 1720, 2535, 3480 |
| Bsp1407I | TGTACA | 2 cut(s) | 1236, 2294 |
| Bsp143I | GATC | 9 cut(s) | 39, 50, 1585, 1690, 2331, 2365, 2611, 2907, 3503 |
| Bsp19I | CCATGG | 2 cut(s) | 1757, 2636 |
| BspANI | GGCC | 7 cut(s) | 15, 171, 1570, 1910, 2440, 2743, 3008 |
| BspCNI | CTCAG | 7 cut(s) | 234, 472, 1366, 1812, 2671, 2758, 3199 |
| BspDI | ATCGAT | 1 cut(s) | 2737 |
| BspFNI | CGCG | 1 cut(s) | 212 |
| BspHI | TCATGA | 1 cut(s) | 2116 |
| BspLI | GGNNCC | 8 cut(s) | 231, 1002, 1392, 2088, 2441, 2504, 2634, 3164 |
| BspMAI | CTGCAG | 3 cut(s) | 2074, 3111, 3538 |
| BspMI | ACCTGC | 1 cut(s) | 3114 |
| BspPI | GGATC | 3 cut(s) | 47, 58, 2326 |
| BspQI | GCTCTTC | 3 cut(s) | 1038, 1202, 1473 |
| BspT104I | TTCGAA | 2 cut(s) | 568, 1036 |
| BspT107I | GGYRCC | 2 cut(s) | 1000, 2632 |
| BspTNI | GGTCTC | 1 cut(s) | 304 |
| BsrBI | CCGCTC | 2 cut(s) | 103, 1662 |
| BsrDI | GCAATG | 1 cut(s) | 721 |
| BsrFI | RCCGGY | 1 cut(s) | 200 |
| BsrGI | TGTACA | 2 cut(s) | 1236, 2294 |
| BsrI | ACTGG | 6 cut(s) | 912, 1548, 1667, 2355, 2528, 2811 |
| BssAI | RCCGGY | 1 cut(s) | 200 |
| BssECI | CCNNGG | 9 cut(s) | 455, 743, 996, 1075, 1133, 1417, 1504, 1757, 2636 |
| BssMI | GATC | 9 cut(s) | 39, 50, 1585, 1690, 2331, 2365, 2611, 2907, 3503 |
| BssNAI | GTATAC | 1 cut(s) | 959 |
| BssNI | GRCGYC | 2 cut(s) | 258, 2136 |
| BssT1I | CCWWGG | 4 cut(s) | 743, 1504, 1757, 2636 |
| Bst1107I | GTATAC | 1 cut(s) | 959 |
| Bst2UI | CCWGG | 4 cut(s) | 456, 928, 1912, 2437 |
| Bst4CI | ACNGT | 8 cut(s) | 128, 1953, 2537, 2978, 3048, 3076, 3118, 3152 |
| Bst6I | CTCTTC | 6 cut(s) | 155, 1038, 1202, 1329, 1473, 2948 |
| BstACI | GRCGYC | 2 cut(s) | 258, 2136 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2429 |
| BstAUI | TGTACA | 2 cut(s) | 1236, 2294 |
| BstBI | TTCGAA | 2 cut(s) | 568, 1036 |
| BstDEI | CTNAG | 9 cut(s) | 242, 480, 1318, 1374, 1820, 1870, 2679, 2745, 3207 |
| BstDSI | CCRYGG | 2 cut(s) | 1757, 2636 |
| BstF5I | GGATG | 4 cut(s) | 615, 1129, 1849, 2850 |
| BstFNI | CGCG | 1 cut(s) | 212 |
| BstHHI | GCGC | 3 cut(s) | 214, 649, 1416 |
| BstKTI | GATC | 9 cut(s) | 42, 53, 1588, 1693, 2334, 2368, 2614, 2910, 3506 |
| BstMAI | GTCTC | 3 cut(s) | 304, 1670, 2198 |
| BstMBI | GATC | 9 cut(s) | 39, 50, 1585, 1690, 2331, 2365, 2611, 2907, 3503 |
| BstMCI | CGRYCG | 1 cut(s) | 127 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 85, 162, 246, 950, 1422, 1715, 2078, 2429, 3539 |
| BstNI | CCWGG | 4 cut(s) | 456, 928, 1912, 2437 |
| BstNSI | RCATGY | 9 cut(s) | 957, 1271, 1838, 2050, 2200, 2465, 2596, 2771, 3230 |
| BstSCI | CCNGG | 5 cut(s) | 454, 926, 1417, 1910, 2435 |
| BstSFI | CTRYAG | 4 cut(s) | 1383, 2070, 3107, 3534 |
| BstSLI | GKGCMC | 1 cut(s) | 2535 |
| BstUI | CGCG | 1 cut(s) | 212 |
| BstV2I | GAAGAC | 2 cut(s) | 2595, 2899 |
| BstX2I | RGATCY | 1 cut(s) | 2331 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 886, 1764 |
| BstYI | RGATCY | 1 cut(s) | 2331 |
| BstZ17I | GTATAC | 1 cut(s) | 959 |
| Bsu15I | ATCGAT | 1 cut(s) | 2737 |
| BsuI | GTATCC | 1 cut(s) | 3514 |
| BsuRI | GGCC | 7 cut(s) | 15, 171, 1570, 1910, 2440, 2743, 3008 |
| BsuTUI | ATCGAT | 1 cut(s) | 2737 |
| BtgI | CCRYGG | 2 cut(s) | 1757, 2636 |
| BtsCI | GGATG | 4 cut(s) | 615, 1129, 1849, 2850 |
| BtsIMutI | CAGTG | 7 cut(s) | 919, 1371, 1555, 2535, 2804, 2974, 3230 |
| BveI | ACCTGC | 1 cut(s) | 3114 |
| CaiI | CAGNNNCTG | 4 cut(s) | 550, 1253, 2069, 2884 |
| CciI | TCATGA | 1 cut(s) | 2116 |
| CfoI | GCGC | 3 cut(s) | 214, 649, 1416 |
| Cfr10I | RCCGGY | 1 cut(s) | 200 |
| ClaI | ATCGAT | 1 cut(s) | 2737 |
| CseI | GACGC | 4 cut(s) | 277, 1472, 2144, 3548 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1128, 1163 |
| DdeI | CTNAG | 9 cut(s) | 242, 480, 1318, 1374, 1820, 1870, 2679, 2745, 3207 |
| DpnI | GATC | 9 cut(s) | 41, 52, 1587, 1692, 2333, 2367, 2613, 2909, 3505 |
| DpnII | GATC | 9 cut(s) | 39, 50, 1585, 1690, 2331, 2365, 2611, 2907, 3503 |
| DraI | TTTAAA | 1 cut(s) | 1305 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 257, 287 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 257, 287 |
| EaeI | YGGCCR | 1 cut(s) | 169 |
| Eam1104I | CTCTTC | 6 cut(s) | 155, 1038, 1202, 1329, 1473, 2948 |
| EarI | CTCTTC | 6 cut(s) | 155, 1038, 1202, 1329, 1473, 2948 |
| Eco130I | CCWWGG | 4 cut(s) | 743, 1504, 1757, 2636 |
| Eco147I | AGGCCT | 1 cut(s) | 15 |
| Eco24I | GRGCYC | 1 cut(s) | 3480 |
| Eco31I | GGTCTC | 1 cut(s) | 304 |
| Eco32I | GATATC | 5 cut(s) | 1826, 2122, 2521, 2992, 3472 |
| Eco47I | GGWCC | 8 cut(s) | 55, 889, 1664, 1754, 2054, 2450, 2875, 3211 |
| Eco57I | CTGAAG | 4 cut(s) | 136, 1226, 1353, 2253 |
| Eco88I | CYCGRG | 2 cut(s) | 1074, 2930 |
| EcoRI | GAATTC | 3 cut(s) | 1518, 2958, 3235 |
| EcoRII | CCWGG | 4 cut(s) | 454, 926, 1910, 2435 |
| EcoRV | GATATC | 5 cut(s) | 1826, 2122, 2521, 2992, 3472 |
| EcoT14I | CCWWGG | 4 cut(s) | 743, 1504, 1757, 2636 |
| EcoT22I | ATGCAT | 2 cut(s) | 1352, 3228 |
| EcoT38I | GRGCYC | 1 cut(s) | 3480 |
| ErhI | CCWWGG | 4 cut(s) | 743, 1504, 1757, 2636 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1326, 1358, 2226, 2258 |
| FaqI | GGGAC | 3 cut(s) | 124, 2903, 3342 |
| FauI | CCCGC | 1 cut(s) | 2098 |
| FbaI | TGATCA | 1 cut(s) | 1585 |
| FblI | GTMKAC | 3 cut(s) | 261, 958, 2544 |
| FokI | GGATG | 4 cut(s) | 622, 1116, 1856, 2837 |
| FriOI | GRGCYC | 1 cut(s) | 3480 |
| FspBI | CTAG | 9 cut(s) | 59, 798, 1028, 1091, 1104, 1280, 1682, 3176, 3562 |
| GlaI | GCGC | 3 cut(s) | 213, 648, 1415 |
| GsaI | CCCAGC | 1 cut(s) | 3244 |
| GsuI | CTGGAG | 4 cut(s) | 870, 2046, 2664, 2828 |
| HaeIII | GGCC | 7 cut(s) | 15, 171, 1570, 1910, 2440, 2743, 3008 |
| HapII | CCGG | 7 cut(s) | 68, 168, 201, 315, 1419, 1561, 2188 |
| HgaI | GACGC | 4 cut(s) | 277, 1472, 2144, 3548 |
| HhaI | GCGC | 3 cut(s) | 214, 649, 1416 |
| Hin1I | GRCGYC | 2 cut(s) | 258, 2136 |
| Hin6I | GCGC | 3 cut(s) | 212, 647, 1414 |
| HinP1I | GCGC | 3 cut(s) | 212, 647, 1414 |
| HincII | GTYRAC | 4 cut(s) | 262, 835, 2652, 3250 |
| HindII | GTYRAC | 4 cut(s) | 262, 835, 2652, 3250 |
| HindIII | AAGCTT | 1 cut(s) | 810 |
| HpaII | CCGG | 7 cut(s) | 68, 168, 201, 315, 1419, 1561, 2188 |
| HphI | GGTGA | 7 cut(s) | 109, 608, 776, 1439, 2371, 2661, 3065 |
| Hpy99I | CGWCG | 9 cut(s) | 23, 238, 263, 266, 275, 278, 281, 284, 293 |
| HpyCH4III | ACNGT | 8 cut(s) | 128, 1953, 2537, 2978, 3048, 3076, 3118, 3152 |
| HpyCH4IV | ACGT | 2 cut(s) | 258, 3558 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 85, 162, 246, 950, 1422, 1715, 2078, 2429, 3539 |
| HpyF3I | CTNAG | 9 cut(s) | 242, 480, 1318, 1374, 1820, 1870, 2679, 2745, 3207 |
| HpySE526I | ACGT | 2 cut(s) | 258, 3558 |
| Hsp92I | GRCGYC | 2 cut(s) | 258, 2136 |
| HspAI | GCGC | 3 cut(s) | 212, 647, 1414 |
| Ksp22I | TGATCA | 1 cut(s) | 1585 |
| Kzo9I | GATC | 9 cut(s) | 39, 50, 1585, 1690, 2331, 2365, 2611, 2907, 3503 |
| LguI | GCTCTTC | 3 cut(s) | 1038, 1202, 1473 |
| LmnI | GCTCC | 6 cut(s) | 161, 170, 235, 1390, 2092, 3168 |
| LweI | GCATC | 1 cut(s) | 3551 |
| MaeI | CTAG | 9 cut(s) | 59, 798, 1028, 1091, 1104, 1280, 1682, 3176, 3562 |
| MaeII | ACGT | 2 cut(s) | 258, 3558 |
| MaeIII | GTNAC | 5 cut(s) | 392, 1324, 1338, 2225, 2902 |
| MalI | GATC | 9 cut(s) | 41, 52, 1587, 1692, 2333, 2367, 2613, 2909, 3505 |
| MbiI | CCGCTC | 2 cut(s) | 103, 1662 |
| MboI | GATC | 9 cut(s) | 39, 50, 1585, 1690, 2331, 2365, 2611, 2907, 3503 |
| MfeI | CAATTG | 1 cut(s) | 2361 |
| MflI | RGATCY | 1 cut(s) | 2331 |
| MhlI | GDGCHC | 4 cut(s) | 1214, 1720, 2535, 3480 |
| MlyI | GAGTC | 7 cut(s) | 1346, 1462, 1672, 2075, 2540, 2827, 3245 |
| Mph1103I | ATGCAT | 2 cut(s) | 1352, 3228 |
| MroXI | GAANNNNTTC | 1 cut(s) | 464 |
| MseI | TTAA | 7 cut(s) | 440, 498, 1304, 2601, 2840, 2865, 2996 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1345, 1581, 1762, 1844, 2466, 2538 |
| MspA1I | CMGCKG | 1 cut(s) | 2384 |
| MspI | CCGG | 7 cut(s) | 68, 168, 201, 315, 1419, 1561, 2188 |
| MspR9I | CCNGG | 5 cut(s) | 456, 928, 1419, 1912, 2437 |
| MunI | CAATTG | 1 cut(s) | 2361 |
| Mva1269I | GAATGC | 3 cut(s) | 716, 2423, 3228 |
| MvaI | CCWGG | 4 cut(s) | 456, 928, 1912, 2437 |
| MvnI | CGCG | 1 cut(s) | 212 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 85, 162, 246, 950, 1422, 1715, 2078, 2429, 3539 |
| NciI | CCSGG | 1 cut(s) | 1419 |
| NcoI | CCATGG | 2 cut(s) | 1757, 2636 |
| NdeII | GATC | 9 cut(s) | 39, 50, 1585, 1690, 2331, 2365, 2611, 2907, 3503 |
| NlaIV | GGNNCC | 8 cut(s) | 231, 1002, 1392, 2088, 2441, 2504, 2634, 3164 |
| NmeAIII | GCCGAG | 1 cut(s) | 133 |
| NmuCI | GTSAC | 1 cut(s) | 1338 |
| NsiI | ATGCAT | 2 cut(s) | 1352, 3228 |
| NspI | RCATGY | 9 cut(s) | 957, 1271, 1838, 2050, 2200, 2465, 2596, 2771, 3230 |
| NspV | TTCGAA | 2 cut(s) | 568, 1036 |
| OliI | CACNNNNGTG | 1 cut(s) | 2538 |
| PaeI | GCATGC | 1 cut(s) | 3230 |
| PagI | TCATGA | 1 cut(s) | 2116 |
| PceI | AGGCCT | 1 cut(s) | 15 |
| PciI | ACATGT | 4 cut(s) | 1267, 1834, 2046, 2461 |
| PciSI | GCTCTTC | 3 cut(s) | 1038, 1202, 1473 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 267, 270, 276, 279, 285, 288 |
| PctI | GAATGC | 3 cut(s) | 716, 2423, 3228 |
| PdmI | GAANNNNTTC | 1 cut(s) | 464 |
| PflFI | GACNNNGTC | 1 cut(s) | 830 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2642 |
| PleI | GAGTC | 7 cut(s) | 1345, 1461, 1672, 2074, 2540, 2827, 3245 |
| PpsI | GAGTC | 7 cut(s) | 1345, 1461, 1672, 2074, 2540, 2827, 3245 |
| PscI | ACATGT | 4 cut(s) | 1267, 1834, 2046, 2461 |
| Psp6I | CCWGG | 4 cut(s) | 454, 926, 1910, 2435 |
| PspFI | CCCAGC | 1 cut(s) | 3240 |
| PspGI | CCWGG | 4 cut(s) | 454, 926, 1910, 2435 |
| PspN4I | GGNNCC | 8 cut(s) | 231, 1002, 1392, 2088, 2441, 2504, 2634, 3164 |
| PstI | CTGCAG | 3 cut(s) | 2074, 3111, 3538 |
| PstNI | CAGNNNCTG | 4 cut(s) | 550, 1253, 2069, 2884 |
| PsuI | RGATCY | 1 cut(s) | 2331 |
| PsyI | GACNNNGTC | 1 cut(s) | 830 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1345, 1581, 1762, 1844, 2466, 2538 |
| SalI | GTCGAC | 1 cut(s) | 260 |
| SapI | GCTCTTC | 3 cut(s) | 1038, 1202, 1473 |
| SaqAI | TTAA | 7 cut(s) | 440, 498, 1304, 2601, 2840, 2865, 2996 |
| Sau3AI | GATC | 9 cut(s) | 39, 50, 1585, 1690, 2331, 2365, 2611, 2907, 3503 |
| SbfI | CCTGCAGG | 1 cut(s) | 3111 |
| ScaI | AGTACT | 2 cut(s) | 796, 2750 |
| SchI | GAGTC | 7 cut(s) | 1346, 1462, 1672, 2075, 2540, 2827, 3245 |
| ScrFI | CCNGG | 5 cut(s) | 456, 928, 1419, 1912, 2437 |
| SdaI | CCTGCAGG | 1 cut(s) | 3111 |
| SduI | GDGCHC | 4 cut(s) | 1214, 1720, 2535, 3480 |
| SfaNI | GCATC | 1 cut(s) | 3551 |
| SfcI | CTRYAG | 4 cut(s) | 1383, 2070, 3107, 3534 |
| SfuI | TTCGAA | 2 cut(s) | 568, 1036 |
| SgrDI | CGTCGACG | 1 cut(s) | 260 |
| SinI | GGWCC | 8 cut(s) | 55, 889, 1664, 1754, 2054, 2450, 2875, 3211 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1345, 1581, 1762, 1844, 2466, 2538 |
| SmlI | CTYRAG | 2 cut(s) | 188, 2201 |
| SmoI | CTYRAG | 2 cut(s) | 188, 2201 |
| SpeI | ACTAGT | 3 cut(s) | 797, 1103, 1279 |
| SphI | GCATGC | 1 cut(s) | 3230 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 3111 |
| SseBI | AGGCCT | 1 cut(s) | 15 |
| SspI | AATATT | 1 cut(s) | 3291 |
| SspMI | CTAG | 9 cut(s) | 59, 798, 1028, 1091, 1104, 1280, 1682, 3176, 3562 |
| StuI | AGGCCT | 1 cut(s) | 15 |
| StyD4I | CCNGG | 5 cut(s) | 454, 926, 1417, 1910, 2435 |
| StyI | CCWWGG | 4 cut(s) | 743, 1504, 1757, 2636 |
| TaaI | ACNGT | 8 cut(s) | 128, 1953, 2537, 2978, 3048, 3076, 3118, 3152 |
| TaiI | ACGT | 2 cut(s) | 261, 3561 |
| TaqII | GACCGA | 2 cut(s) | 286, 368 |
| TatI | WGTACW | 7 cut(s) | 794, 1236, 1625, 2095, 2294, 2347, 2748 |
| TauI | GCSGC | 5 cut(s) | 82, 85, 88, 103, 758 |
| Tru1I | TTAA | 7 cut(s) | 440, 498, 1304, 2601, 2840, 2865, 2996 |
| Tru9I | TTAA | 7 cut(s) | 440, 498, 1304, 2601, 2840, 2865, 2996 |
| TscAI | CASTG | 7 cut(s) | 919, 1378, 1555, 2535, 2811, 2981, 3237 |
| TseFI | GTSAC | 1 cut(s) | 1338 |
| Tsp45I | GTSAC | 1 cut(s) | 1338 |
| TspGWI | ACGGA | 3 cut(s) | 222, 1606, 3203 |
| TspRI | CASTG | 7 cut(s) | 919, 1378, 1555, 2535, 2811, 2981, 3237 |
| Tth111I | GACNNNGTC | 1 cut(s) | 830 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2642 |
| VneI | GTGCAC | 1 cut(s) | 2531 |
| VpaK11BI | GGWCC | 8 cut(s) | 55, 889, 1664, 1754, 2054, 2450, 2875, 3211 |
| XbaI | TCTAGA | 1 cut(s) | 3175 |
| XceI | RCATGY | 9 cut(s) | 957, 1271, 1838, 2050, 2200, 2465, 2596, 2771, 3230 |
| XmiI | GTMKAC | 3 cut(s) | 261, 958, 2544 |
| XmnI | GAANNNNTTC | 1 cut(s) | 464 |
| XspI | CTAG | 9 cut(s) | 59, 798, 1028, 1091, 1104, 1280, 1682, 3176, 3562 |
| ZraI | GACGTC | 1 cut(s) | 259 |
| ZrmI | AGTACT | 2 cut(s) | 796, 2750 |
| Zsp2I | ATGCAT | 2 cut(s) | 1352, 3228 |