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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G48310 AT5G48310 |
| fragaria_vesca | FvH4_6g40180 FvH4_6g40180 FvH4_6g40180 FvH4_6g40180 |
| malus_domestica | MD09G1134500.v1.1 MD17G1123400.v1.1 |
| prunus_persica | Prupe.3G192200_v2.0.a1 Prupe.3G192200_v2.0.a1 Prupe.3G192200_v2.0.a1 |
| pyrus_communis | pycom09g05570 |
| rosa_chinensis | RchiOBHm_Chr2g0155201 |
| rosa_laevigata | RLG00000020825 |
| rosa_multiflora | Rmu_sc0004976.1_g000039 |
| rosa_roxburghii | Rroxscaffold_2G00093880 |
| rosa_rugosa | Rorug02G0445900 |
| rosa_samantha | Rh2AG512200 Rh2BG522900 Rh2CG497200 Rh2DG532600 |
| rosa_wichuraiana | Rw2G042080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2680 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 260 |
| AatII | GACGTC | 1 cut(s) | 264 |
| Acc36I | ACCTGC | 2 cut(s) | 2680, 3174 |
| AccB1I | GGYRCC | 2 cut(s) | 1003, 2692 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2537, 2702 |
| AccBSI | CCGCTC | 2 cut(s) | 106, 1665 |
| AccI | GTMKAC | 4 cut(s) | 264, 961, 2106, 2547 |
| AccII | CGCG | 1 cut(s) | 215 |
| AclI | AACGTT | 1 cut(s) | 938 |
| AclWI | GGATC | 3 cut(s) | 47, 58, 2329 |
| AcoI | YGGCCR | 1 cut(s) | 172 |
| AcsI | RAATTY | 9 cut(s) | 1125, 1521, 1726, 1781, 2290, 2316, 2996, 3018, 3295 |
| AcuI | CTGAAG | 5 cut(s) | 139, 612, 1229, 1356, 2256 |
| AcyI | GRCGYC | 1 cut(s) | 261 |
| AfaI | GTAC | 9 cut(s) | 799, 913, 1241, 1630, 1899, 2100, 2299, 2352, 2810 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 748, 1137, 1138, 1427, 2134, 2450, 2537, 2702, 3086 |
| AflIII | ACRYGT | 4 cut(s) | 1270, 1837, 2049, 2464 |
| AhlI | ACTAGT | 4 cut(s) | 800, 1106, 1282, 1550 |
| AjnI | CCWGG | 5 cut(s) | 457, 929, 1913, 2438, 3218 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 715, 747 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1507, 1539, 3120, 3152 |
| Alw21I | GWGCWC | 2 cut(s) | 1217, 1723 |
| Alw26I | GTCTC | 3 cut(s) | 307, 1673, 2201 |
| AlwI | GGATC | 3 cut(s) | 47, 58, 2329 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 553, 1256, 2072, 2944 |
| Ama87I | CYCGRG | 1 cut(s) | 1077 |
| AoxI | GGCC | 7 cut(s) | 13, 172, 1571, 1911, 2441, 2801, 3066 |
| ApoI | RAATTY | 9 cut(s) | 1125, 1521, 1726, 1781, 2290, 2316, 2996, 3018, 3295 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1966, 1998, 3392, 3424 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 467 |
| AspLEI | GCGC | 4 cut(s) | 217, 352, 652, 1419 |
| AspS9I | GGNCC | 9 cut(s) | 892, 1667, 1757, 2057, 2442, 2453, 2935, 3066, 3271 |
| AsuC2I | CCSGG | 1 cut(s) | 1422 |
| AsuHPI | GGTGA | 7 cut(s) | 112, 611, 779, 1442, 2374, 2721, 3125 |
| AsuII | TTCGAA | 2 cut(s) | 571, 1039 |
| AvaI | CYCGRG | 1 cut(s) | 1077 |
| AvaII | GGWCC | 7 cut(s) | 892, 1667, 1757, 2057, 2453, 2935, 3271 |
| BanI | GGYRCC | 2 cut(s) | 1003, 2692 |
| BanII | GRGCYC | 1 cut(s) | 3468 |
| BbsI | GAAGAC | 2 cut(s) | 276, 2959 |
| Bbv12I | GWGCWC | 2 cut(s) | 1217, 1723 |
| BbvCI | CCTCAGC | 2 cut(s) | 2739, 3267 |
| BccI | CCATC | 9 cut(s) | 154, 607, 1140, 2164, 2270, 2455, 2793, 2918, 3251 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3392, 3426 |
| BciT130I | CCWGG | 5 cut(s) | 459, 931, 1915, 2440, 3220 |
| BciVI | GTATCC | 1 cut(s) | 3502 |
| BclI | TGATCA | 1 cut(s) | 1588 |
| BcnI | CCSGG | 1 cut(s) | 1422 |
| BcoDI | GTCTC | 3 cut(s) | 307, 1673, 2201 |
| BcuI | ACTAGT | 4 cut(s) | 800, 1106, 1282, 1550 |
| BfmI | CTRYAG | 5 cut(s) | 1386, 2073, 2094, 3167, 3522 |
| BfuAI | ACCTGC | 2 cut(s) | 2680, 3174 |
| BfuI | GTATCC | 1 cut(s) | 3502 |
| BmcAI | AGTACT | 1 cut(s) | 2810 |
| Bme1390I | CCNGG | 6 cut(s) | 459, 931, 1422, 1915, 2440, 3220 |
| Bme18I | GGWCC | 7 cut(s) | 892, 1667, 1757, 2057, 2453, 2935, 3271 |
| BmeT110I | CYCGRG | 1 cut(s) | 1077 |
| BmgT120I | GGNCC | 9 cut(s) | 892, 1667, 1757, 2057, 2442, 2453, 2935, 3066, 3271 |
| BmiI | GGNNCC | 9 cut(s) | 234, 456, 1005, 1395, 2091, 2444, 2507, 2694, 3224 |
| BmrFI | CCNGG | 6 cut(s) | 459, 931, 1422, 1915, 2440, 3220 |
| BmrI | ACTGGG | 1 cut(s) | 2352 |
| BmsI | GCATC | 3 cut(s) | 1456, 2128, 3539 |
| BmuI | ACTGGG | 1 cut(s) | 2352 |
| BpiI | GAAGAC | 2 cut(s) | 276, 2959 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2754, 2786 |
| BpmI | CTGGAG | 4 cut(s) | 873, 2049, 2724, 2888 |
| Bpu10I | CCTNAGC | 4 cut(s) | 245, 1321, 2739, 3267 |
| Bpu14I | TTCGAA | 2 cut(s) | 571, 1039 |
| BpuEI | CTTGAG | 2 cut(s) | 176, 2225 |
| BpuMI | CCSGG | 1 cut(s) | 1422 |
| Bsa29I | ATCGAT | 1 cut(s) | 2797 |
| BsaHI | GRCGYC | 1 cut(s) | 261 |
| BsaI | GGTCTC | 1 cut(s) | 307 |
| BsaJI | CCNNGG | 9 cut(s) | 458, 746, 999, 1078, 1136, 1420, 1507, 1760, 2696 |
| BsaWI | WCCGGW | 3 cut(s) | 317, 1563, 2190 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 748, 1137, 1138, 1427, 2134, 2450, 2537, 2702, 3086 |
| Bse118I | RCCGGY | 2 cut(s) | 67, 203 |
| Bse1I | ACTGG | 5 cut(s) | 915, 1670, 2358, 2531, 2871 |
| BseBI | CCWGG | 5 cut(s) | 459, 931, 1915, 2440, 3220 |
| BseCI | ATCGAT | 1 cut(s) | 2797 |
| BseDI | CCNNGG | 9 cut(s) | 458, 746, 999, 1078, 1136, 1420, 1507, 1760, 2696 |
| BseGI | GGATG | 7 cut(s) | 618, 796, 1132, 1471, 1852, 2143, 2910 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 748, 1137, 1138, 1427, 2134, 2450, 2537, 2702, 3086 |
| BseMII | CTCAG | 7 cut(s) | 236, 474, 1368, 1814, 2730, 2819, 3258 |
| BseNI | ACTGG | 5 cut(s) | 915, 1670, 2358, 2531, 2871 |
| BseRI | GAGGAG | 2 cut(s) | 392, 1306 |
| BseYI | CCCAGC | 1 cut(s) | 3300 |
| BsgI | GTGCAG | 1 cut(s) | 979 |
| Bsh1236I | CGCG | 1 cut(s) | 215 |
| Bsh1285I | CGRYCG | 1 cut(s) | 130 |
| BshFI | GGCC | 7 cut(s) | 15, 174, 1573, 1913, 2443, 2803, 3068 |
| BshNI | GGYRCC | 2 cut(s) | 1003, 2692 |
| BshVI | ATCGAT | 1 cut(s) | 2797 |
| BsiEI | CGRYCG | 1 cut(s) | 130 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1217, 1723 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1077 |
| BsiSI | CCGG | 7 cut(s) | 68, 171, 204, 318, 1422, 1564, 2191 |
| BslFI | GGGAC | 3 cut(s) | 127, 2963, 3402 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 748, 1137, 1138, 1427, 2134, 2450, 2537, 2702, 3086 |
| BsmAI | GTCTC | 3 cut(s) | 307, 1673, 2201 |
| BsmFI | GGGAC | 3 cut(s) | 127, 2963, 3402 |
| BsmI | GAATGC | 3 cut(s) | 719, 2426, 3288 |
| BsnI | GGCC | 7 cut(s) | 15, 174, 1573, 1913, 2443, 2803, 3068 |
| Bso31I | GGTCTC | 1 cut(s) | 307 |
| BsoBI | CYCGRG | 1 cut(s) | 1077 |
| Bsp119I | TTCGAA | 2 cut(s) | 571, 1039 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1217, 1723, 3468 |
| Bsp1407I | TGTACA | 2 cut(s) | 1239, 2297 |
| Bsp143I | GATC | 8 cut(s) | 39, 50, 1588, 1693, 2334, 2368, 2614, 3491 |
| Bsp19I | CCATGG | 2 cut(s) | 1760, 2696 |
| BspANI | GGCC | 7 cut(s) | 15, 174, 1573, 1913, 2443, 2803, 3068 |
| BspCNI | CTCAG | 7 cut(s) | 237, 475, 1369, 1815, 2731, 2818, 3259 |
| BspDI | ATCGAT | 1 cut(s) | 2797 |
| BspFNI | CGCG | 1 cut(s) | 215 |
| BspHI | TCATGA | 1 cut(s) | 2119 |
| BspLI | GGNNCC | 9 cut(s) | 234, 456, 1005, 1395, 2091, 2444, 2507, 2694, 3224 |
| BspMAI | CTGCAG | 4 cut(s) | 2077, 2098, 3171, 3526 |
| BspMI | ACCTGC | 2 cut(s) | 2680, 3174 |
| BspPI | GGATC | 3 cut(s) | 47, 58, 2329 |
| BspQI | GCTCTTC | 3 cut(s) | 1041, 1205, 1476 |
| BspT104I | TTCGAA | 2 cut(s) | 571, 1039 |
| BspT107I | GGYRCC | 2 cut(s) | 1003, 2692 |
| BspTNI | GGTCTC | 1 cut(s) | 307 |
| BsrBI | CCGCTC | 2 cut(s) | 106, 1665 |
| BsrFI | RCCGGY | 2 cut(s) | 67, 203 |
| BsrGI | TGTACA | 2 cut(s) | 1239, 2297 |
| BsrI | ACTGG | 5 cut(s) | 915, 1670, 2358, 2531, 2871 |
| BssAI | RCCGGY | 2 cut(s) | 67, 203 |
| BssECI | CCNNGG | 9 cut(s) | 458, 746, 999, 1078, 1136, 1420, 1507, 1760, 2696 |
| BssMI | GATC | 8 cut(s) | 39, 50, 1588, 1693, 2334, 2368, 2614, 3491 |
| BssNAI | GTATAC | 1 cut(s) | 962 |
| BssNI | GRCGYC | 1 cut(s) | 261 |
| BssT1I | CCWWGG | 4 cut(s) | 746, 1507, 1760, 2696 |
| Bst1107I | GTATAC | 1 cut(s) | 962 |
| Bst2UI | CCWGG | 5 cut(s) | 459, 931, 1915, 2440, 3220 |
| Bst4CI | ACNGT | 7 cut(s) | 131, 1956, 3038, 3108, 3136, 3178, 3212 |
| Bst6I | CTCTTC | 7 cut(s) | 158, 369, 1041, 1205, 1332, 1476, 3008 |
| BstACI | GRCGYC | 1 cut(s) | 261 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2432 |
| BstAUI | TGTACA | 2 cut(s) | 1239, 2297 |
| BstBI | TTCGAA | 2 cut(s) | 571, 1039 |
| BstDEI | CTNAG | 9 cut(s) | 245, 483, 1321, 1377, 1823, 1873, 2739, 2805, 3267 |
| BstDSI | CCRYGG | 2 cut(s) | 1760, 2696 |
| BstF5I | GGATG | 7 cut(s) | 618, 796, 1132, 1471, 1852, 2143, 2910 |
| BstFNI | CGCG | 1 cut(s) | 215 |
| BstHHI | GCGC | 4 cut(s) | 217, 352, 652, 1419 |
| BstKTI | GATC | 8 cut(s) | 42, 53, 1591, 1696, 2337, 2371, 2617, 3494 |
| BstMAI | GTCTC | 3 cut(s) | 307, 1673, 2201 |
| BstMBI | GATC | 8 cut(s) | 39, 50, 1588, 1693, 2334, 2368, 2614, 3491 |
| BstMCI | CGRYCG | 1 cut(s) | 130 |
| BstNI | CCWGG | 5 cut(s) | 459, 931, 1915, 2440, 3220 |
| BstNSI | RCATGY | 8 cut(s) | 960, 1274, 1841, 2053, 2203, 2468, 2831, 3290 |
| BstSCI | CCNGG | 6 cut(s) | 457, 929, 1420, 1913, 2438, 3218 |
| BstSFI | CTRYAG | 5 cut(s) | 1386, 2073, 2094, 3167, 3522 |
| BstUI | CGCG | 1 cut(s) | 215 |
| BstV2I | GAAGAC | 2 cut(s) | 276, 2959 |
| BstX2I | RGATCY | 1 cut(s) | 2334 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 889, 1767 |
| BstYI | RGATCY | 1 cut(s) | 2334 |
| BstZ17I | GTATAC | 1 cut(s) | 962 |
| Bsu15I | ATCGAT | 1 cut(s) | 2797 |
| BsuI | GTATCC | 1 cut(s) | 3502 |
| BsuRI | GGCC | 7 cut(s) | 15, 174, 1573, 1913, 2443, 2803, 3068 |
| BsuTUI | ATCGAT | 1 cut(s) | 2797 |
| BtgI | CCRYGG | 2 cut(s) | 1760, 2696 |
| BtsCI | GGATG | 7 cut(s) | 618, 796, 1132, 1471, 1852, 2143, 2910 |
| BtsIMutI | CAGTG | 6 cut(s) | 922, 1374, 2538, 2864, 3034, 3290 |
| BveI | ACCTGC | 2 cut(s) | 2680, 3174 |
| CaiI | CAGNNNCTG | 4 cut(s) | 553, 1256, 2072, 2944 |
| CciI | TCATGA | 1 cut(s) | 2119 |
| CfoI | GCGC | 4 cut(s) | 217, 352, 652, 1419 |
| Cfr10I | RCCGGY | 2 cut(s) | 67, 203 |
| Cfr13I | GGNCC | 9 cut(s) | 892, 1667, 1757, 2057, 2442, 2453, 2935, 3066, 3271 |
| ClaI | ATCGAT | 1 cut(s) | 2797 |
| CseI | GACGC | 1 cut(s) | 3536 |
| Csp6I | GTAC | 9 cut(s) | 798, 912, 1240, 1629, 1898, 2099, 2298, 2351, 2809 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1131, 1166 |
| CviQI | GTAC | 9 cut(s) | 798, 912, 1240, 1629, 1898, 2099, 2298, 2351, 2809 |
| DdeI | CTNAG | 9 cut(s) | 245, 483, 1321, 1377, 1823, 1873, 2739, 2805, 3267 |
| DpnI | GATC | 8 cut(s) | 41, 52, 1590, 1695, 2336, 2370, 2616, 3493 |
| DpnII | GATC | 8 cut(s) | 39, 50, 1588, 1693, 2334, 2368, 2614, 3491 |
| DraI | TTTAAA | 1 cut(s) | 1308 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 260 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 260 |
| EaeI | YGGCCR | 1 cut(s) | 172 |
| Eam1104I | CTCTTC | 7 cut(s) | 158, 369, 1041, 1205, 1332, 1476, 3008 |
| EarI | CTCTTC | 7 cut(s) | 158, 369, 1041, 1205, 1332, 1476, 3008 |
| Eco130I | CCWWGG | 4 cut(s) | 746, 1507, 1760, 2696 |
| Eco147I | AGGCCT | 1 cut(s) | 15 |
| Eco24I | GRGCYC | 1 cut(s) | 3468 |
| Eco31I | GGTCTC | 1 cut(s) | 307 |
| Eco32I | GATATC | 5 cut(s) | 1829, 2125, 2524, 3052, 3460 |
| Eco47I | GGWCC | 7 cut(s) | 892, 1667, 1757, 2057, 2453, 2935, 3271 |
| Eco57I | CTGAAG | 5 cut(s) | 139, 612, 1229, 1356, 2256 |
| Eco88I | CYCGRG | 1 cut(s) | 1077 |
| EcoRI | GAATTC | 3 cut(s) | 1521, 3018, 3295 |
| EcoRII | CCWGG | 5 cut(s) | 457, 929, 1913, 2438, 3218 |
| EcoRV | GATATC | 5 cut(s) | 1829, 2125, 2524, 3052, 3460 |
| EcoT14I | CCWWGG | 4 cut(s) | 746, 1507, 1760, 2696 |
| EcoT22I | ATGCAT | 3 cut(s) | 719, 1355, 3288 |
| EcoT38I | GRGCYC | 1 cut(s) | 3468 |
| ErhI | CCWWGG | 4 cut(s) | 746, 1507, 1760, 2696 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1329, 1361, 2229, 2261 |
| FaqI | GGGAC | 3 cut(s) | 127, 2963, 3402 |
| FbaI | TGATCA | 1 cut(s) | 1588 |
| FblI | GTMKAC | 4 cut(s) | 264, 961, 2106, 2547 |
| FokI | GGATG | 7 cut(s) | 625, 803, 1119, 1478, 1859, 2150, 2897 |
| FriOI | GRGCYC | 1 cut(s) | 3468 |
| GlaI | GCGC | 4 cut(s) | 216, 351, 651, 1418 |
| GsaI | CCCAGC | 1 cut(s) | 3304 |
| GsuI | CTGGAG | 4 cut(s) | 873, 2049, 2724, 2888 |
| HaeIII | GGCC | 7 cut(s) | 15, 174, 1573, 1913, 2443, 2803, 3068 |
| HapII | CCGG | 7 cut(s) | 68, 171, 204, 318, 1422, 1564, 2191 |
| HgaI | GACGC | 1 cut(s) | 3536 |
| HhaI | GCGC | 4 cut(s) | 217, 352, 652, 1419 |
| Hin1I | GRCGYC | 1 cut(s) | 261 |
| Hin6I | GCGC | 4 cut(s) | 215, 350, 650, 1417 |
| HinP1I | GCGC | 4 cut(s) | 215, 350, 650, 1417 |
| HincII | GTYRAC | 5 cut(s) | 265, 838, 2662, 2712, 3310 |
| HindII | GTYRAC | 5 cut(s) | 265, 838, 2662, 2712, 3310 |
| HindIII | AAGCTT | 1 cut(s) | 813 |
| HpaI | GTTAAC | 1 cut(s) | 2662 |
| HpaII | CCGG | 7 cut(s) | 68, 171, 204, 318, 1422, 1564, 2191 |
| HphI | GGTGA | 7 cut(s) | 112, 611, 779, 1442, 2374, 2721, 3125 |
| Hpy99I | CGWCG | 8 cut(s) | 23, 241, 266, 269, 278, 281, 284, 287 |
| HpyCH4III | ACNGT | 7 cut(s) | 131, 1956, 3038, 3108, 3136, 3178, 3212 |
| HpyCH4IV | ACGT | 3 cut(s) | 261, 938, 3546 |
| HpyF3I | CTNAG | 9 cut(s) | 245, 483, 1321, 1377, 1823, 1873, 2739, 2805, 3267 |
| HpySE526I | ACGT | 3 cut(s) | 261, 938, 3546 |
| Hsp92I | GRCGYC | 1 cut(s) | 261 |
| HspAI | GCGC | 4 cut(s) | 215, 350, 650, 1417 |
| Ksp22I | TGATCA | 1 cut(s) | 1588 |
| KspAI | GTTAAC | 1 cut(s) | 2662 |
| Kzo9I | GATC | 8 cut(s) | 39, 50, 1588, 1693, 2334, 2368, 2614, 3491 |
| LguI | GCTCTTC | 3 cut(s) | 1041, 1205, 1476 |
| LmnI | GCTCC | 6 cut(s) | 164, 173, 238, 1393, 2095, 3228 |
| LweI | GCATC | 3 cut(s) | 1456, 2128, 3539 |
| MaeII | ACGT | 3 cut(s) | 261, 938, 3546 |
| MaeIII | GTNAC | 6 cut(s) | 395, 1327, 1341, 2013, 2228, 2962 |
| MalI | GATC | 8 cut(s) | 41, 52, 1590, 1695, 2336, 2370, 2616, 3493 |
| MbiI | CCGCTC | 2 cut(s) | 106, 1665 |
| MboI | GATC | 8 cut(s) | 39, 50, 1588, 1693, 2334, 2368, 2614, 3491 |
| MfeI | CAATTG | 1 cut(s) | 2364 |
| MflI | RGATCY | 1 cut(s) | 2334 |
| MhlI | GDGCHC | 3 cut(s) | 1217, 1723, 3468 |
| MlyI | GAGTC | 7 cut(s) | 1349, 1465, 1675, 2078, 2543, 2887, 3305 |
| Mph1103I | ATGCAT | 3 cut(s) | 719, 1355, 3288 |
| MroXI | GAANNNNTTC | 1 cut(s) | 467 |
| MseI | TTAA | 8 cut(s) | 443, 501, 1307, 2604, 2661, 2900, 2925, 3056 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1348, 1584, 1765, 1847, 2469, 2541 |
| MspA1I | CMGCKG | 1 cut(s) | 2387 |
| MspI | CCGG | 7 cut(s) | 68, 171, 204, 318, 1422, 1564, 2191 |
| MspR9I | CCNGG | 6 cut(s) | 459, 931, 1422, 1915, 2440, 3220 |
| MunI | CAATTG | 1 cut(s) | 2364 |
| Mva1269I | GAATGC | 3 cut(s) | 719, 2426, 3288 |
| MvaI | CCWGG | 5 cut(s) | 459, 931, 1915, 2440, 3220 |
| MvnI | CGCG | 1 cut(s) | 215 |
| NciI | CCSGG | 1 cut(s) | 1422 |
| NcoI | CCATGG | 2 cut(s) | 1760, 2696 |
| NdeII | GATC | 8 cut(s) | 39, 50, 1588, 1693, 2334, 2368, 2614, 3491 |
| NlaIV | GGNNCC | 9 cut(s) | 234, 456, 1005, 1395, 2091, 2444, 2507, 2694, 3224 |
| NmeAIII | GCCGAG | 1 cut(s) | 136 |
| NmuCI | GTSAC | 2 cut(s) | 1341, 2013 |
| NsiI | ATGCAT | 3 cut(s) | 719, 1355, 3288 |
| NspI | RCATGY | 8 cut(s) | 960, 1274, 1841, 2053, 2203, 2468, 2831, 3290 |
| NspV | TTCGAA | 2 cut(s) | 571, 1039 |
| PaeI | GCATGC | 1 cut(s) | 3290 |
| PagI | TCATGA | 1 cut(s) | 2119 |
| PaqCI | CACCTGC | 1 cut(s) | 2680 |
| PceI | AGGCCT | 1 cut(s) | 15 |
| PciI | ACATGT | 4 cut(s) | 1270, 1837, 2049, 2464 |
| PciSI | GCTCTTC | 3 cut(s) | 1041, 1205, 1476 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 270, 273, 279, 282, 288 |
| PctI | GAATGC | 3 cut(s) | 719, 2426, 3288 |
| PdmI | GAANNNNTTC | 1 cut(s) | 467 |
| PflFI | GACNNNGTC | 1 cut(s) | 833 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2537, 2702 |
| PleI | GAGTC | 7 cut(s) | 1348, 1464, 1675, 2077, 2543, 2887, 3305 |
| PpsI | GAGTC | 7 cut(s) | 1348, 1464, 1675, 2077, 2543, 2887, 3305 |
| PscI | ACATGT | 4 cut(s) | 1270, 1837, 2049, 2464 |
| Psp1406I | AACGTT | 1 cut(s) | 938 |
| Psp6I | CCWGG | 5 cut(s) | 457, 929, 1913, 2438, 3218 |
| PspFI | CCCAGC | 1 cut(s) | 3300 |
| PspGI | CCWGG | 5 cut(s) | 457, 929, 1913, 2438, 3218 |
| PspN4I | GGNNCC | 9 cut(s) | 234, 456, 1005, 1395, 2091, 2444, 2507, 2694, 3224 |
| PspPI | GGNCC | 9 cut(s) | 892, 1667, 1757, 2057, 2442, 2453, 2935, 3066, 3271 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 48, 80 |
| PstI | CTGCAG | 4 cut(s) | 2077, 2098, 3171, 3526 |
| PstNI | CAGNNNCTG | 4 cut(s) | 553, 1256, 2072, 2944 |
| PsuI | RGATCY | 1 cut(s) | 2334 |
| PsyI | GACNNNGTC | 1 cut(s) | 833 |
| RsaI | GTAC | 9 cut(s) | 799, 913, 1241, 1630, 1899, 2100, 2299, 2352, 2810 |
| RsaNI | GTAC | 9 cut(s) | 798, 912, 1240, 1629, 1898, 2099, 2298, 2351, 2809 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1348, 1584, 1765, 1847, 2469, 2541 |
| SalI | GTCGAC | 1 cut(s) | 263 |
| SapI | GCTCTTC | 3 cut(s) | 1041, 1205, 1476 |
| SaqAI | TTAA | 8 cut(s) | 443, 501, 1307, 2604, 2661, 2900, 2925, 3056 |
| Sau3AI | GATC | 8 cut(s) | 39, 50, 1588, 1693, 2334, 2368, 2614, 3491 |
| Sau96I | GGNCC | 9 cut(s) | 892, 1667, 1757, 2057, 2442, 2453, 2935, 3066, 3271 |
| SbfI | CCTGCAGG | 1 cut(s) | 3171 |
| ScaI | AGTACT | 1 cut(s) | 2810 |
| SchI | GAGTC | 7 cut(s) | 1349, 1465, 1675, 2078, 2543, 2887, 3305 |
| ScrFI | CCNGG | 6 cut(s) | 459, 931, 1422, 1915, 2440, 3220 |
| SdaI | CCTGCAGG | 1 cut(s) | 3171 |
| SduI | GDGCHC | 3 cut(s) | 1217, 1723, 3468 |
| SfaNI | GCATC | 3 cut(s) | 1456, 2128, 3539 |
| SfcI | CTRYAG | 5 cut(s) | 1386, 2073, 2094, 3167, 3522 |
| SfuI | TTCGAA | 2 cut(s) | 571, 1039 |
| SgrDI | CGTCGACG | 1 cut(s) | 263 |
| SinI | GGWCC | 7 cut(s) | 892, 1667, 1757, 2057, 2453, 2935, 3271 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1348, 1584, 1765, 1847, 2469, 2541 |
| SmlI | CTYRAG | 2 cut(s) | 191, 2204 |
| SmoI | CTYRAG | 2 cut(s) | 191, 2204 |
| SpeI | ACTAGT | 4 cut(s) | 800, 1106, 1282, 1550 |
| SphI | GCATGC | 1 cut(s) | 3290 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 3171 |
| SseBI | AGGCCT | 1 cut(s) | 15 |
| SspI | AATATT | 1 cut(s) | 3351 |
| StuI | AGGCCT | 1 cut(s) | 15 |
| StyD4I | CCNGG | 6 cut(s) | 457, 929, 1420, 1913, 2438, 3218 |
| StyI | CCWWGG | 4 cut(s) | 746, 1507, 1760, 2696 |
| TaaI | ACNGT | 7 cut(s) | 131, 1956, 3038, 3108, 3136, 3178, 3212 |
| TaiI | ACGT | 3 cut(s) | 264, 941, 3549 |
| TaqII | GACCGA | 1 cut(s) | 289 |
| TatI | WGTACW | 6 cut(s) | 1239, 1628, 2098, 2297, 2350, 2808 |
| TauI | GCSGC | 4 cut(s) | 85, 88, 91, 106 |
| Tru1I | TTAA | 8 cut(s) | 443, 501, 1307, 2604, 2661, 2900, 2925, 3056 |
| Tru9I | TTAA | 8 cut(s) | 443, 501, 1307, 2604, 2661, 2900, 2925, 3056 |
| TscAI | CASTG | 6 cut(s) | 922, 1381, 2538, 2871, 3041, 3297 |
| TseFI | GTSAC | 2 cut(s) | 1341, 2013 |
| Tsp45I | GTSAC | 2 cut(s) | 1341, 2013 |
| TspGWI | ACGGA | 6 cut(s) | 225, 371, 1007, 1609, 1770, 3263 |
| TspRI | CASTG | 6 cut(s) | 922, 1381, 2538, 2871, 3041, 3297 |
| Tth111I | GACNNNGTC | 1 cut(s) | 833 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2537, 2702 |
| VpaK11BI | GGWCC | 7 cut(s) | 892, 1667, 1757, 2057, 2453, 2935, 3271 |
| XapI | RAATTY | 9 cut(s) | 1125, 1521, 1726, 1781, 2290, 2316, 2996, 3018, 3295 |
| XbaI | TCTAGA | 1 cut(s) | 3235 |
| XceI | RCATGY | 8 cut(s) | 960, 1274, 1841, 2053, 2203, 2468, 2831, 3290 |
| XmiI | GTMKAC | 4 cut(s) | 264, 961, 2106, 2547 |
| XmnI | GAANNNNTTC | 1 cut(s) | 467 |
| ZraI | GACGTC | 1 cut(s) | 262 |
| ZrmI | AGTACT | 1 cut(s) | 2810 |
| Zsp2I | ATGCAT | 3 cut(s) | 719, 1355, 3288 |