FvH4_6g45260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018865
Physical Location & Seq
Reverse (-)
34780400 .. 34781233
834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45260.t1

Sequence Viewer

Length: 834 bp
ATGATGAGTCGCTATGGTAAGGAAAAAGAACCAGTTGTGGTAGCAACATATATTGACTTGGTTTTGTGTCAGCATCGAAAACATGATTACCACATCTGCAATCCATATACTAGACAATTTGTTGCTCTCCCACGAGCTCCTCCATCCGTTGAGTTCCAGGACATGGTAATCGGATTCATATGCGACGACCTTGAAACTTCTGGGAGTAGGTGCAGAGTTGTGAGAATTCCTGGAACATTTGGAGATATACATGCTGTAACTTCCTCCAATTTGAAGGTGGAAATCTTCTCGTCCGAAACTGGTGTATGGAGACGGTCATTTATCTCATTCAGCCAACAAATTTATCCTTTTCTGATCAATAGTATTACCTATCCTTACAATGGAATGCTATATTGGGAGACAGACCATAACACTTTTGTTGGGTTTGATCCTTTCATGATCAACCATAGTAGTAGTGATGGTGATGATATTATGGATCACTATAAAGGTCGTATCATTGAGTTTGGTGATAAGCAGTACTGCAATATTAAGTGTGCAGGCATGTGTGGAGGGCGTCTAAGATTCTTCGGCGACTTCAAATTATGTAAACTTCATGTATGGGAATTGGAAGAAGAAGAAGATGAGAGAGCTCACGATAGATCTGGCAAACTGGTTTTGAAATGCATGAGTTATTCATGGGATAGAACATCGCTTCGATTCCAGACGTGGAGAGATACATGGGTGGTTTTTGATCCGAATGATGAGAATATCTTGTACCTGGATTTCATCTATTTTCAGAAGCAACATTCGTACAAGAGAGCGGTCAACGGTGTCTTATCCGTCATGTGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

278

Amino Acids

32.54

Weight (kDa)

6.06

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 13 - 253 3.3e-13 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018865)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45251 FvH4_6g45260
rosa_chinensis RchiOBHm_Chr2g0163011
rosa_multiflora Rmu_sc0011038.1_g000004
rosa_roxburghii Rroxscaffold_2G00087390 Rroxscaffold_2G00087620
rosa_rugosa Rorug02G0499600
rosa_samantha Rh2AG566000 Rh2DG588700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 163
AccBSI CCGCTC 1 cut(s) 800
AciI CCGC 1 cut(s) 800
AclWI GGATC 3 cut(s) 422, 483, 725
AcsI RAATTY 2 cut(s) 225, 339
AcyI GRCGYC 1 cut(s) 553
AfaI GTAC 3 cut(s) 518, 755, 791
AfiI CCNNNNNNNGG 3 cut(s) 163, 380, 825
AgsI TTSAA 4 cut(s) 194, 274, 577, 658
AjiI CACGTC 1 cut(s) 705
AjnI CCWGG 3 cut(s) 156, 229, 756
AjuI GAANNNNNNNTTGG 2 cut(s) 376, 408
AluBI AGCT 2 cut(s) 137, 629
AluI AGCT 2 cut(s) 137, 629
Alw21I GWGCWC 2 cut(s) 139, 631
Alw26I GTCTC 2 cut(s) 304, 392
AlwI GGATC 3 cut(s) 422, 483, 725
ApoI RAATTY 2 cut(s) 225, 339
AsuHPI GGTGA 2 cut(s) 473, 518
BaeI ACNNNNGTAYC 2 cut(s) 705, 738
BanII GRGCYC 2 cut(s) 139, 631
BauI CACGAG 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 139, 631
BccI CCATC 2 cut(s) 151, 452
BciT130I CCWGG 3 cut(s) 158, 231, 758
BclI TGATCA 2 cut(s) 354, 438
BcoDI GTCTC 2 cut(s) 304, 392
BfaI CTAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 638
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 3 cut(s) 158, 231, 758
BmgBI CACGTC 1 cut(s) 705
BmrFI CCNGG 3 cut(s) 158, 231, 758
BmsI GCATC 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 553
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 380, 825
Bse1I ACTGG 3 cut(s) 32, 304, 654
BseBI CCWGG 3 cut(s) 158, 231, 758
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 3 cut(s) 163, 380, 825
BseNI ACTGG 3 cut(s) 32, 304, 654
BseRI GAGGAG 1 cut(s) 129
BsgI GTGCAG 2 cut(s) 232, 555
BsiHKAI GWGCWC 2 cut(s) 139, 631
BslI CCNNNNNNNGG 3 cut(s) 163, 380, 825
BsmAI GTCTC 2 cut(s) 304, 392
BsmBI CGTCTC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 390
Bsp1286I GDGCHC 2 cut(s) 139, 631
Bsp143I GATC 6 cut(s) 354, 427, 438, 475, 638, 730
BspACI CCGC 1 cut(s) 800
BspHI TCATGA 1 cut(s) 435
BspPI GGATC 3 cut(s) 422, 483, 725
BsrBI CCGCTC 1 cut(s) 800
BsrI ACTGG 3 cut(s) 32, 304, 654
BssMI GATC 6 cut(s) 354, 427, 438, 475, 638, 730
BssNI GRCGYC 1 cut(s) 553
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 3 cut(s) 158, 231, 758
Bst4CI ACNGT 2 cut(s) 315, 809
BstACI GRCGYC 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 538
BstDEI CTNAG 1 cut(s) 557
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 6 cut(s) 357, 430, 441, 478, 641, 733
BstMAI GTCTC 2 cut(s) 304, 392
BstMBI GATC 6 cut(s) 354, 427, 438, 475, 638, 730
BstNI CCWGG 3 cut(s) 158, 231, 758
BstNSI RCATGY 2 cut(s) 254, 544
BstSCI CCNGG 3 cut(s) 156, 229, 756
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 672
BtrI CACGTC 1 cut(s) 705
BtsCI GGATG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 538
CciI TCATGA 1 cut(s) 435
CseI GACGC 1 cut(s) 542
Csp6I GTAC 3 cut(s) 517, 754, 790
CviJI RGCY 4 cut(s) 137, 333, 629, 829
CviKI_1 RGCY 4 cut(s) 137, 333, 629, 829
CviQI GTAC 3 cut(s) 517, 754, 790
DdeI CTNAG 1 cut(s) 557
DpnI GATC 6 cut(s) 356, 429, 440, 477, 640, 732
DpnII GATC 6 cut(s) 354, 427, 438, 475, 638, 730
Ecl136II GAGCTC 2 cut(s) 137, 629
Eco24I GRGCYC 2 cut(s) 139, 631
Eco53kI GAGCTC 2 cut(s) 137, 629
EcoICRI GAGCTC 2 cut(s) 137, 629
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 3 cut(s) 156, 229, 756
EcoT22I ATGCAT 1 cut(s) 665
EcoT38I GRGCYC 2 cut(s) 139, 631
Esp3I CGTCTC 1 cut(s) 304
FauNDI CATATG 1 cut(s) 179
FbaI TGATCA 2 cut(s) 354, 438
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 2 cut(s) 139, 631
FspBI CTAG 1 cut(s) 111
HgaI GACGC 1 cut(s) 542
Hin1I GRCGYC 1 cut(s) 553
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HinfI GANTC 4 cut(s) 7, 174, 561, 696
HphI GGTGA 2 cut(s) 473, 518
Hpy166II GTNNAC 2 cut(s) 587, 805
Hpy188I TCNGA 5 cut(s) 173, 295, 354, 735, 777
Hpy188III TCNNGA 3 cut(s) 436, 632, 700
Hpy8I GTNNAC 2 cut(s) 587, 805
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 315, 809
HpyCH4IV ACGT 1 cut(s) 704
HpyCH4V TGCA 5 cut(s) 99, 213, 522, 536, 663
HpyF3I CTNAG 1 cut(s) 557
HpySE526I ACGT 1 cut(s) 704
Hsp92I GRCGYC 1 cut(s) 553
Ksp22I TGATCA 2 cut(s) 354, 438
Kzo9I GATC 6 cut(s) 354, 427, 438, 475, 638, 730
LmnI GCTCC 1 cut(s) 142
LweI GCATC 1 cut(s) 82
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 704
MaeIII GTNAC 1 cut(s) 256
MalI GATC 6 cut(s) 356, 429, 440, 477, 640, 732
MbiI CCGCTC 1 cut(s) 800
MboI GATC 6 cut(s) 354, 427, 438, 475, 638, 730
MboII GAAGA 6 cut(s) 277, 556, 620, 623, 626, 629
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 2 cut(s) 139, 631
MluCI AATT 6 cut(s) 116, 225, 268, 339, 578, 602
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 3 cut(s) 150, 274, 542
Mph1103I ATGCAT 1 cut(s) 665
MseI TTAA 1 cut(s) 528
MspR9I CCNGG 3 cut(s) 158, 231, 758
Mva1269I GAATGC 1 cut(s) 390
MvaI CCWGG 3 cut(s) 158, 231, 758
NdeI CATATG 1 cut(s) 179
NdeII GATC 6 cut(s) 354, 427, 438, 475, 638, 730
NsiI ATGCAT 1 cut(s) 665
NspI RCATGY 2 cut(s) 254, 544
PagI TCATGA 1 cut(s) 435
PctI GAATGC 1 cut(s) 390
PfeI GAWTC 3 cut(s) 174, 561, 696
PflMI CCANNNNNTGG 1 cut(s) 163
PfoI TCCNGGA 2 cut(s) 156, 229
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Psp124BI GAGCTC 2 cut(s) 139, 631
Psp6I CCWGG 3 cut(s) 156, 229, 756
PspGI CCWGG 3 cut(s) 156, 229, 756
PsuI RGATCY 1 cut(s) 638
RsaI GTAC 3 cut(s) 518, 755, 791
RsaNI GTAC 3 cut(s) 517, 754, 790
SacI GAGCTC 2 cut(s) 139, 631
SaqAI TTAA 1 cut(s) 528
Sau3AI GATC 6 cut(s) 354, 427, 438, 475, 638, 730
ScaI AGTACT 1 cut(s) 518
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 3 cut(s) 158, 231, 758
SduI GDGCHC 2 cut(s) 139, 631
SetI ASST 9 cut(s) 139, 192, 212, 279, 371, 490, 631, 707, 759
SfaNI GCATC 1 cut(s) 82
Sse9I AATT 6 cut(s) 116, 225, 268, 339, 578, 602
SsiI CCGC 1 cut(s) 800
SspI AATATT 1 cut(s) 526
SspMI CTAG 1 cut(s) 111
SstI GAGCTC 2 cut(s) 139, 631
StyD4I CCNGG 3 cut(s) 156, 229, 756
TaaI ACNGT 2 cut(s) 315, 809
TaiI ACGT 1 cut(s) 707
TaqI TCGA 2 cut(s) 76, 694
TasI AATT 6 cut(s) 116, 225, 268, 339, 578, 602
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 3 cut(s) 174, 561, 696
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TspDTI ATGAA 5 cut(s) 166, 424, 581, 663, 754
TspGWI ACGGA 2 cut(s) 136, 808
Van91I CCANNNNNTGG 1 cut(s) 163
XapI RAATTY 2 cut(s) 225, 339
XceI RCATGY 2 cut(s) 254, 544
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XspI CTAG 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.