FvH4_6g45460

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018065
Physical Location & Seq
Reverse (-)
34891906 .. 34892944
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45460.t1

Sequence Viewer

Length: 531 bp
ATGGAAACCAAGTCCATCATCGTCTCCCTCCTCATCCTCCAGCTTGCTGTAACCGCTTTTTCCAAAGGCGGACATAAGGGAAAGGGCGGTGGCGGTCATCATCGTGATCAAAACCCTATGCACCAACCTCACGGCTCTCACAAGGACGTGCATGAGCCGGGAGGTCCGGCAGGGGGGATTGCAAAGCCAGGAAGCAAACCACAGGTTGAGTTCGGAGGAGTAGATGAACAATTTGCACCCAGCAGTGGTGGAGATGCATCTGGCGATAAGAAGTGGTGCATTGCCAAAGGTGGTATTCCTAAAACTCTTTTGAAGAATGACTTCGATAGTTTGTGCAAAGAGGTCGATTGCTCGCCTACAAACGGAACAGGCTTGTGCTATACCGAATCCATCTTCGCCAAGGCCTCATTCGCCATGAATCTGAAGTATCAGAAGAACGGTAAGAAGGATGCCGACTGCGTTTACGAAGGAAGAGCAGAGACTACCACCAAAGATCCCAGCTGGGGTAAGTGTATAATGGTGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

177

Amino Acids

18.56

Weight (kDa)

8.48

Isoelectric Point (pI)

24.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 91 - 159 1.3e-11 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018065)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45460
rosa_chinensis RchiOBHm_Chr2g0163301
rosa_laevigata RLG00000021389
rosa_multiflora Rmu_sc0002045.1_g000007
rosa_roxburghii Rroxscaffold_2G00087400
rosa_rugosa Rorug02G0502100
rosa_samantha Rh2AG568900 Rh2BG581000 Rh2CG550600 Rh2DG590900
rosa_wichuraiana Rw2G047070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 54, 69, 87, 93
AclWI GGATC 1 cut(s) 488
AcuI CTGAAG 1 cut(s) 443
AfiI CCNNNNNNNGG 4 cut(s) 173, 245, 362, 503
AgsI TTSAA 1 cut(s) 313
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 392, 424
AluBI AGCT 2 cut(s) 43, 501
AluI AGCT 2 cut(s) 43, 501
Alw26I GTCTC 2 cut(s) 28, 473
AlwI GGATC 1 cut(s) 488
AoxI GGCC 1 cut(s) 402
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 516
BccI CCATC 2 cut(s) 23, 398
BceAI ACGGC 1 cut(s) 148
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 28, 473
Bme1390I CCNGG 2 cut(s) 159, 189
Bme18I GGWCC 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 164
BmrFI CCNGG 2 cut(s) 159, 189
BmsI GCATC 3 cut(s) 244, 266, 439
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 399
Bsc4I CCNNNNNNNGG 4 cut(s) 173, 245, 362, 503
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 2 cut(s) 33, 454
BseLI CCNNNNNNNGG 4 cut(s) 173, 245, 362, 503
BseMI GCAATG 1 cut(s) 279
BseRI GAGGAG 2 cut(s) 20, 231
BseYI CCCAGC 3 cut(s) 239, 497, 501
BshFI GGCC 1 cut(s) 404
BsiSI CCGG 2 cut(s) 158, 167
BslI CCNNNNNNNGG 4 cut(s) 173, 245, 362, 503
BsmAI GTCTC 2 cut(s) 28, 473
BsmBI CGTCTC 1 cut(s) 28
BsnI GGCC 1 cut(s) 404
Bsp143I GATC 2 cut(s) 106, 493
BspACI CCGC 4 cut(s) 54, 69, 87, 93
BspANI GGCC 1 cut(s) 404
BspPI GGATC 1 cut(s) 488
BspQI GCTCTTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 2 cut(s) 106, 493
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 45, 353
BstF5I GGATG 2 cut(s) 33, 454
BstKTI GATC 2 cut(s) 109, 496
BstMAI GTCTC 2 cut(s) 28, 473
BstMBI GATC 2 cut(s) 106, 493
BstMWI GCNNNNNNNGC 2 cut(s) 53, 410
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 157, 187
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 1 cut(s) 404
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 33, 454
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 45, 353
Cfr13I GGNCC 1 cut(s) 164
CviAII CATG 2 cut(s) 152, 415
CviJI RGCY 7 cut(s) 43, 135, 157, 187, 372, 404, 501
CviKI_1 RGCY 7 cut(s) 43, 135, 157, 187, 372, 404, 501
DpnI GATC 2 cut(s) 108, 495
DpnII GATC 2 cut(s) 106, 493
Eam1104I CTCTTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 466
EciI GGCGGA 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 399
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 2 cut(s) 155, 418
FaiI YATR 6 cut(s) 75, 119, 153, 381, 416, 515
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 2 cut(s) 151, 414
FbaI TGATCA 1 cut(s) 106
FokI GGATG 2 cut(s) 20, 461
GsaI CCCAGC 3 cut(s) 243, 501, 505
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 1 cut(s) 404
HapII CCGG 2 cut(s) 158, 167
Hin1II CATG 2 cut(s) 155, 418
HinfI GANTC 2 cut(s) 386, 418
HpaII CCGG 2 cut(s) 158, 167
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 3 cut(s) 215, 423, 432
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 2 cut(s) 439, 461
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 7 cut(s) 121, 151, 182, 236, 257, 279, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 410
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 155, 418
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 493
LguI GCTCTTC 1 cut(s) 466
LweI GCATC 3 cut(s) 244, 266, 439
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 108, 495
MboI GATC 2 cut(s) 106, 493
MboII GAAGA 5 cut(s) 325, 385, 445, 483, 516
MflI RGATCY 1 cut(s) 493
MluCI AATT 1 cut(s) 230
MnlI CCTC 8 cut(s) 38, 41, 47, 138, 155, 209, 334, 415
Mph1103I ATGCAT 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 1 cut(s) 529
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 501
MspI CCGG 2 cut(s) 158, 167
MspR9I CCNGG 2 cut(s) 159, 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 53, 410
NciI CCSGG 1 cut(s) 159
NdeII GATC 2 cut(s) 106, 493
NlaIII CATG 2 cut(s) 155, 418
NsiI ATGCAT 1 cut(s) 259
PceI AGGCCT 1 cut(s) 404
PciSI GCTCTTC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 386, 418
Psp6I CCWGG 1 cut(s) 187
PspFI CCCAGC 3 cut(s) 239, 497, 501
PspGI CCWGG 1 cut(s) 187
PspPI GGNCC 1 cut(s) 164
PsuI RGATCY 1 cut(s) 493
PvuII CAGCTG 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 466
SaqAI TTAA 1 cut(s) 529
Sau3AI GATC 2 cut(s) 106, 493
Sau96I GGNCC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 159, 189
SetI ASST 8 cut(s) 45, 130, 150, 166, 207, 292, 345, 503
SfaNI GCATC 3 cut(s) 244, 266, 439
SinI GGWCC 1 cut(s) 164
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 1 cut(s) 230
SseBI AGGCCT 1 cut(s) 404
SsiI CCGC 4 cut(s) 54, 69, 87, 93
StuI AGGCCT 1 cut(s) 404
StyD4I CCNGG 2 cut(s) 157, 187
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 324, 345
TasI AATT 1 cut(s) 230
TfiI GAWTC 2 cut(s) 386, 418
Tru1I TTAA 1 cut(s) 529
Tru9I TTAA 1 cut(s) 529
TscAI CASTG 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 240, 431
TspGWI ACGGA 1 cut(s) 378
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.