Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018065

Physical Location & Seq

Genomic Coordinates Reverse (-)

82359890 .. 82361514

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG590900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCCACCAAGTTCGTCCTCGTCTCTCTTCTCCTCCTTCAGCTTGCCGTAACTGCTTTCTCCGGCATCGCTCAACAGAACCCTCACCACCAACCACACGGTAAACAGAAGACCGCACATGAGCCAGGGGGTCCAGCAGGGGGAATTCCAAAGCCAGGAAGTAAACCACAGGTTCCGTTCGGAGGAGCAGATGACGCACCTCACGATGATGGACCTGCATCCGGCGGCACCGGCAAGAAGTGGTGCATAGCCAAAACTACTATTCAGAAAAGCCTTTTGAAGAAGGACTTTGATGACTTGTGCAAAGAGGTCGATTGCTCGCCTACAGAAGGAAAAGGTTTATGCTATACTGAGTCCAACCACGCCAAAGCGTCCTTCGCCATGAATCTTAAATATCAAAAGAACGGTAAGAAGGATGCTGACTGCAACTACGATGGAAGAGCAGAGATTGTCACCAAAGACCCAAGTACGTCATCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

160

Amino Acids

16.92

Weight (kDa)

8.55

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	80 - 148	1.8e-12	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018065)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45460
rosa_chinensis	RchiOBHm_Chr2g0163301
rosa_laevigata	RLG00000021389
rosa_multiflora	Rmu_sc0002045.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087400
rosa_rugosa	Rorug02G0502100
rosa_samantha	Rh2AG568900 Rh2BG581000 Rh2CG550600 Rh2DG590900
rosa_wichuraiana	Rw2G047070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	2 cut(s)	114, 225
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	5 cut(s)	140, 155, 182, 221, 329
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	124, 154
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	131, 212
AsuHPI	GGTGA	2 cut(s)	77, 445
AvaII	GGWCC	2 cut(s)	131, 212
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	116
BccI	CCATC	2 cut(s)	203, 428
BceAI	ACGGC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	2 cut(s)	126, 156
BcoDI	GTCTC	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	126, 156
Bme18I	GGWCC	2 cut(s)	131, 212
BmgT120I	GGNCC	2 cut(s)	131, 212
BmiI	GGNNCC	3 cut(s)	132, 174, 229
BmrFI	CCNGG	2 cut(s)	126, 156
BmsI	GCATC	3 cut(s)	75, 227, 406
BpiI	GAAGAC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	5 cut(s)	140, 155, 182, 221, 329
Bse118I	RCCGGY	1 cut(s)	230
BseBI	CCWGG	2 cut(s)	126, 156
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	218, 421
BseLI	CCNNNNNNNGG	5 cut(s)	140, 155, 182, 221, 329
BseMII	CTCAG	1 cut(s)	342
BseRI	GAGGAG	2 cut(s)	23, 198
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	3 cut(s)	63, 222, 231
BslI	CCNNNNNNNGG	5 cut(s)	140, 155, 182, 221, 329
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	114, 225
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	3 cut(s)	132, 174, 229
BspMI	ACCTGC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	126, 156
Bst4CI	ACNGT	2 cut(s)	101, 407
Bst6I	CTCTTC	2 cut(s)	33, 433
BstC8I	GCNNGC	2 cut(s)	45, 320
BstDEI	CTNAG	1 cut(s)	351
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	218, 421
BstMAI	GTCTC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 194, 231, 377
BstNI	CCWGG	2 cut(s)	126, 156
BstSCI	CCNGG	2 cut(s)	124, 154
BstSFI	CTRYAG	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	218, 421
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	45, 320
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	131, 212
CseI	GACGC	2 cut(s)	203, 360
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	2 cut(s)	119, 382
CviJI	RGCY	6 cut(s)	5, 43, 124, 154, 251, 273
CviKI_1	RGCY	6 cut(s)	5, 43, 124, 154, 251, 273
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	33, 433
EarI	CTCTTC	2 cut(s)	33, 433
Eco47I	GGWCC	2 cut(s)	131, 212
Eco57I	CTGAAG	1 cut(s)	23
EcoNI	CCTNNNNNAGG	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	124, 154
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	122, 385
FaiI	YATR	6 cut(s)	120, 248, 343, 348, 383, 481
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	2 cut(s)	118, 381
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	2 cut(s)	205, 428
Fsp4HI	GCNGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	63, 222, 231
HgaI	GACGC	2 cut(s)	203, 360
Hin1II	CATG	2 cut(s)	122, 385
HinfI	GANTC	2 cut(s)	353, 385
HpaII	CCGG	3 cut(s)	63, 222, 231
HphI	GGTGA	2 cut(s)	77, 445
Hpy166II	GTNNAC	2 cut(s)	104, 164
Hpy188I	TCNGA	2 cut(s)	182, 267
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	104, 164
HpyAV	CCTTC	5 cut(s)	47, 277, 323, 385, 406
HpyCH4III	ACNGT	2 cut(s)	101, 407
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	4 cut(s)	218, 246, 303, 426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 194, 231, 377
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	122, 385
LguI	GCTCTTC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	185
LweI	GCATC	3 cut(s)	75, 227, 406
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	2 cut(s)	49, 451
MboII	GAAGA	4 cut(s)	20, 121, 292, 450
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	6 cut(s)	29, 44, 93, 176, 210, 301
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	63, 222, 231
MspR9I	CCNGG	2 cut(s)	126, 156
MvaI	CCWGG	2 cut(s)	126, 156
MwoI	GCNNNNNNNGC	4 cut(s)	53, 194, 231, 377
NlaIII	CATG	2 cut(s)	122, 385
NlaIV	GGNNCC	3 cut(s)	132, 174, 229
NmuCI	GTSAC	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp6I	CCWGG	2 cut(s)	124, 154
PspGI	CCWGG	2 cut(s)	124, 154
PspN4I	GGNNCC	3 cut(s)	132, 174, 229
PspPI	GGNCC	2 cut(s)	131, 212
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	226
Sau96I	GGNCC	2 cut(s)	131, 212
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	126, 156
SetI	ASST	7 cut(s)	45, 174, 202, 217, 312, 340, 473
SfaNI	GCATC	3 cut(s)	75, 227, 406
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	131, 212
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	2 cut(s)	114, 225
StyD4I	CCNGG	2 cut(s)	124, 154
TaaI	ACNGT	2 cut(s)	101, 407
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	144
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	165
VpaK11BI	GGWCC	2 cut(s)	131, 212
XagI	CCTNNNNNAGG	1 cut(s)	327
XapI	RAATTY	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.