Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0018065

Physical Location & Seq

Genomic Coordinates Forward (+)

63451245 .. 63453765

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0502100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGTAATAGTGCTTATGAAAGTTCTTCTGAAATGGATCGACACGATGTGGATATTGGAGGGGTTCCCTATGTAGTAATGGTGGAAAATCTTGAGAAGGGGATATCACCATTTACAATTATGGAATTTATCCATCAGCAAGTTTCAATATCATGTCAAGTACTTGTTTCTCCAAGTTTGTCGTCGGAGGCATATACAAGAGGAACCATCACTGTGAACAGCAAAAAGAATCTGGACAAGTTGTCTGGGTTTTTGGAGAATCCAGATCACAGCATCATTTCTTCAAAGGGAAGGCCTTGGGTAATTACTGAGAAACGGCTAGCACATGATATTTCATTGGCTTCAATTCAAGCCTTCATTGCTAACTATCAGACTATGTTAAGGAGTAGAAAAATTGAAACGAGCAATGAATTGAAGGTTGTCCTCTCTGGAACTGAAGAATTCAACACAGCTATGCTGCTGAAGAATTTATTTTGGGAATTTGTTAATCATCAAGCTCGACTTCACCAGAGGTTACTTACTGAAGAGGCAAAGATCTCTCAGCTATTTGATGCAGAAGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

188

Amino Acids

21.28

Weight (kDa)

5.52

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018065)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45460
rosa_chinensis	RchiOBHm_Chr2g0163301
rosa_laevigata	RLG00000021389
rosa_multiflora	Rmu_sc0002045.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087400
rosa_rugosa	Rorug02G0502100
rosa_samantha	Rh2AG568900 Rh2BG581000 Rh2CG550600 Rh2DG590900
rosa_wichuraiana	Rw2G047070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	4 cut(s)	125, 440, 466, 479
AcuI	CTGAAG	3 cut(s)	456, 482, 543
AdeI	CACNNNGTG	1 cut(s)	49
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	7 cut(s)	147, 285, 345, 350, 398, 415, 445
AhdI	GACNNNNNGTC	1 cut(s)	241
AluBI	AGCT	3 cut(s)	452, 497, 544
AluI	AGCT	3 cut(s)	452, 497, 544
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	457
ApoI	RAATTY	4 cut(s)	125, 440, 466, 479
AsuHPI	GGTGA	2 cut(s)	99, 497
AsuNHI	GCTAGC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	2 cut(s)	141, 215
BceAI	ACGGC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	320
BglII	AGATCT	1 cut(s)	534
BisI	GCNGC	1 cut(s)	458
BlsI	GCNGC	1 cut(s)	459
BmcAI	AGTACT	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	66, 205
BmsI	GCATC	2 cut(s)	282, 541
BmtI	GCTAGC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	296
Bse3DI	GCAATG	2 cut(s)	357, 412
BseDI	CCNNGG	1 cut(s)	296
BseMI	GCAATG	2 cut(s)	357, 412
BseMII	CTCAG	2 cut(s)	300, 554
BseXI	GCAGC	1 cut(s)	444
BshFI	GGCC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	295
Bsp143I	GATC	3 cut(s)	37, 265, 534
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	301, 553
BspLI	GGNNCC	2 cut(s)	66, 205
BspOI	GCTAGC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	357, 412
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	3 cut(s)	37, 265, 534
BssT1I	CCWWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	519, 552
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	2 cut(s)	309, 540
BstKTI	GATC	3 cut(s)	40, 268, 537
BstMBI	GATC	3 cut(s)	37, 265, 534
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	153, 326
CviJI	RGCY	7 cut(s)	295, 319, 341, 353, 452, 497, 544
CviKI_1	RGCY	7 cut(s)	295, 319, 341, 353, 452, 497, 544
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	2 cut(s)	309, 540
DpnI	GATC	3 cut(s)	39, 267, 536
DpnII	GATC	3 cut(s)	37, 265, 534
DraIII	CACNNNGTG	1 cut(s)	49
DriI	GACNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	519, 552
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	2 cut(s)	519, 552
Eco130I	CCWWGG	1 cut(s)	296
Eco147I	AGGCCT	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	105
Eco57I	CTGAAG	3 cut(s)	456, 482, 543
EcoRI	GAATTC	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	156, 329
FaiI	YATR	9 cut(s)	18, 72, 122, 154, 193, 195, 327, 377, 455
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FatI	CATG	2 cut(s)	152, 325
Fnu4HI	GCNGC	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	458
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	156, 329
HinfI	GANTC	2 cut(s)	229, 259
HphI	GGTGA	2 cut(s)	99, 497
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	31, 187, 372
Hpy188III	TCNNGA	4 cut(s)	92, 233, 263, 429
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	4 cut(s)	91, 285, 364, 409
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	1 cut(s)	554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	309, 540
Hsp92II	CATG	2 cut(s)	156, 329
Kzo9I	GATC	3 cut(s)	37, 265, 534
LpnPI	CCDG	5 cut(s)	218, 231, 276, 414, 521
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	2 cut(s)	282, 541
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	3 cut(s)	39, 267, 536
MboI	GATC	3 cut(s)	37, 265, 534
MboII	GAAGA	5 cut(s)	18, 273, 449, 475, 536
MflI	RGATCY	1 cut(s)	534
MluCI	AATT	9 cut(s)	117, 125, 303, 345, 393, 410, 440, 466, 479
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	53, 181, 194, 434, 504, 520
MseI	TTAA	2 cut(s)	380, 486
MslI	CAYNNNNRTG	2 cut(s)	212, 452
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	3 cut(s)	37, 265, 534
NheI	GCTAGC	1 cut(s)	319
NlaIII	CATG	2 cut(s)	156, 329
NlaIV	GGNNCC	2 cut(s)	66, 205
PceI	AGGCCT	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	229, 259
PkrI	GCNGC	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	66, 205
PsuI	RGATCY	1 cut(s)	534
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
RseI	CAYNNNNRTG	2 cut(s)	212, 452
SaqAI	TTAA	2 cut(s)	380, 486
SatI	GCNGC	1 cut(s)	458
Sau3AI	GATC	3 cut(s)	37, 265, 534
ScaI	AGTACT	1 cut(s)	162
SetI	ASST	5 cut(s)	420, 454, 499, 515, 546
SfaNI	GCATC	2 cut(s)	282, 541
SmiMI	CAYNNNNRTG	2 cut(s)	212, 452
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	9 cut(s)	117, 125, 303, 345, 393, 410, 440, 466, 479
SseBI	AGGCCT	1 cut(s)	295
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	40, 499
TasI	AATT	9 cut(s)	117, 125, 303, 345, 393, 410, 440, 466, 479
TatI	WGTACW	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	229, 259
Tru1I	TTAA	2 cut(s)	380, 486
Tru9I	TTAA	2 cut(s)	380, 486
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	457
TspDTI	ATGAA	4 cut(s)	33, 324, 346, 423
TspRI	CASTG	1 cut(s)	217
XapI	RAATTY	4 cut(s)	125, 440, 466, 479
XspI	CTAG	1 cut(s)	320
ZrmI	AGTACT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.