Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018065

Physical Location & Seq

Genomic Coordinates Reverse (-)

73073936 .. 73075722

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG550600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCCACCAAGTTCGTCCTCGTCTCGCTTCTCCTCCTTCAGCTTGCCGTAACTGCTTTCTCCGGCATCGCTCAACAGAACCCTCACCACCAACCACACGGTAAACAGAAGACCGCACATGAGCCAGGGGGTCCAGCAGGGGGAATTCCAAAGCCAGGAAGTAAACCACAGGTTCCGTTCGGAGGAGCAGATGAAGCACCTCACGATGATGGACCTGCAACCGGCAAGAAGTGGTGCATAGCCAAAACTACTATTCAGAAAAGCCTTTTGAAGAAGGACTATGATGACTTGTGCAAAGAGGTCGATTGCTCGCCTACAGACGGAAAAGGTTTATGCTATACTGAGTCCAACCACGCCAAAGCGTCCTTCGCCATGAATCTTAAATATCAAAAGAACGGTCAGAAGGATGCTGACTGCAACTACGATGGAAGAGCAGAGATTGTCACCAAAGACCCAAGTACGTCATCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

157

Amino Acids

16.74

Weight (kDa)

8.23

Isoelectric Point (pI)

26.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	77 - 145	2.4e-11	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018065)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45460
rosa_chinensis	RchiOBHm_Chr2g0163301
rosa_laevigata	RLG00000021389
rosa_multiflora	Rmu_sc0002045.1_g000007
rosa_roxburghii	Rroxscaffold_2G00087400
rosa_rugosa	Rorug02G0502100
rosa_samantha	Rh2AG568900 Rh2BG581000 Rh2CG550600 Rh2DG590900
rosa_wichuraiana	Rw2G047070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AciI	CCGC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	144
AcuI	CTGAAG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	5 cut(s)	140, 155, 182, 221, 320
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	124, 154
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	144
ArsI	GACNNNNNNTTYG	2 cut(s)	382, 414
AspS9I	GGNCC	2 cut(s)	131, 212
AsuHPI	GGTGA	2 cut(s)	77, 436
AvaII	GGWCC	2 cut(s)	131, 212
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	116
BccI	CCATC	2 cut(s)	203, 419
BceAI	ACGGC	1 cut(s)	32
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	2 cut(s)	126, 156
BcoDI	GTCTC	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	126, 156
Bme18I	GGWCC	2 cut(s)	131, 212
BmgT120I	GGNCC	2 cut(s)	131, 212
BmiI	GGNNCC	2 cut(s)	132, 174
BmrFI	CCNGG	2 cut(s)	126, 156
BmsI	GCATC	2 cut(s)	75, 397
BpiI	GAAGAC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	5 cut(s)	140, 155, 182, 221, 320
Bse118I	RCCGGY	1 cut(s)	221
BseBI	CCWGG	2 cut(s)	126, 156
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	5 cut(s)	140, 155, 182, 221, 320
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	2 cut(s)	23, 198
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	63, 222
BslI	CCNNNNNNNGG	5 cut(s)	140, 155, 182, 221, 320
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	132, 174
BspMI	ACCTGC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	126, 156
Bst4CI	ACNGT	2 cut(s)	101, 398
Bst6I	CTCTTC	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	45, 311
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	412
BstMAI	GTCTC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 194, 368
BstNI	CCWGG	2 cut(s)	126, 156
BstSCI	CCNGG	2 cut(s)	124, 154
BstSFI	CTRYAG	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	45, 311
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	131, 212
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	2 cut(s)	119, 373
CviJI	RGCY	6 cut(s)	5, 43, 124, 154, 242, 264
CviKI_1	RGCY	6 cut(s)	5, 43, 124, 154, 242, 264
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	1 cut(s)	342
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Eco47I	GGWCC	2 cut(s)	131, 212
Eco57I	CTGAAG	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	124, 154
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	122, 376
FaiI	YATR	7 cut(s)	120, 239, 282, 334, 339, 374, 472
FatI	CATG	2 cut(s)	118, 372
FokI	GGATG	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	63, 222
HgaI	GACGC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	122, 376
HinfI	GANTC	2 cut(s)	344, 376
HpaII	CCGG	2 cut(s)	63, 222
HphI	GGTGA	2 cut(s)	77, 436
Hpy166II	GTNNAC	2 cut(s)	104, 164
Hpy188I	TCNGA	3 cut(s)	182, 258, 402
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	104, 164
HpyAV	CCTTC	4 cut(s)	47, 268, 376, 397
HpyCH4III	ACNGT	2 cut(s)	101, 398
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	4 cut(s)	218, 237, 294, 417
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 194, 368
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	2 cut(s)	122, 376
LguI	GCTCTTC	1 cut(s)	424
LmnI	GCTCC	1 cut(s)	185
LweI	GCATC	2 cut(s)	75, 397
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	2 cut(s)	49, 442
MboII	GAAGA	3 cut(s)	121, 283, 441
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	6 cut(s)	29, 44, 93, 176, 210, 292
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	207
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	63, 222
MspR9I	CCNGG	2 cut(s)	126, 156
MvaI	CCWGG	2 cut(s)	126, 156
MwoI	GCNNNNNNNGC	3 cut(s)	53, 194, 368
NlaIII	CATG	2 cut(s)	122, 376
NlaIV	GGNNCC	2 cut(s)	132, 174
NmuCI	GTSAC	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	124, 154
PspGI	CCWGG	2 cut(s)	124, 154
PspN4I	GGNNCC	2 cut(s)	132, 174
PspPI	GGNCC	2 cut(s)	131, 212
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
RseI	CAYNNNNRTG	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	381
Sau96I	GGNCC	2 cut(s)	131, 212
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	126, 156
SetI	ASST	7 cut(s)	45, 174, 202, 217, 303, 331, 464
SfaNI	GCATC	2 cut(s)	75, 397
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	131, 212
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	124, 154
TaaI	ACNGT	2 cut(s)	101, 398
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	303
TasI	AATT	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	207, 389
TspGWI	ACGGA	2 cut(s)	165, 336
VpaK11BI	GGWCC	2 cut(s)	131, 212
XapI	RAATTY	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.