isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G29385 |
| fragaria_vesca | FvH4_6g46950 FvH4_6g46950 |
| malus_domestica | MD09G1065800.v1.1 MD17G1058500.v1.1 |
| prunus_persica | Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 |
| pyrus_communis | pycom111g05540 pycom17g05860 |
| rosa_chinensis | RchiOBHm_Chr2g0165931 |
| rosa_laevigata | RLG00000021570 |
| rosa_multiflora | Rmu_co8475311.1_g000001 Rmu_sc0006218.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00085300 |
| rosa_rugosa | Rorug02G0519300 |
| rosa_samantha | Rh2AG584900 Rh2BG596700 Rh2CG567500 Rh2DG606900 |
| rosa_wichuraiana | Rw2G048770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1058 |
| Acc36I | ACCTGC | 3 cut(s) | 1058, 1611, 4487 |
| Acc65I | GGTACC | 1 cut(s) | 3922 |
| AccB1I | GGYRCC | 2 cut(s) | 3922, 4075 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 3080, 3344, 4684 |
| AccI | GTMKAC | 2 cut(s) | 236, 1896 |
| AccII | CGCG | 2 cut(s) | 397, 1864 |
| AciI | CCGC | 6 cut(s) | 77, 521, 1425, 1592, 1732, 4385 |
| AclI | AACGTT | 1 cut(s) | 2993 |
| AcoI | YGGCCR | 2 cut(s) | 3484, 4052 |
| AcuI | CTGAAG | 7 cut(s) | 311, 498, 507, 623, 1029, 3250, 3870 |
| AcvI | CACGTG | 1 cut(s) | 3689 |
| AcyI | GRCGYC | 1 cut(s) | 2385 |
| AdeI | CACNNNGTG | 2 cut(s) | 3080, 4195 |
| AflII | CTTAAG | 1 cut(s) | 4502 |
| AflIII | ACRYGT | 2 cut(s) | 1557, 1953 |
| AgeI | ACCGGT | 1 cut(s) | 1484 |
| AjiI | CACGTC | 1 cut(s) | 1802 |
| Alw21I | GWGCWC | 2 cut(s) | 1447, 2828 |
| Alw44I | GTGCAC | 1 cut(s) | 1443 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1327, 2939, 4409, 4822 |
| Ama87I | CYCGRG | 2 cut(s) | 3858, 4731 |
| ApaLI | GTGCAC | 1 cut(s) | 1443 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2536, 2568 |
| AseI | ATTAAT | 1 cut(s) | 1944 |
| AsiGI | ACCGGT | 1 cut(s) | 1484 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4278 |
| Asp718I | GGTACC | 1 cut(s) | 3922 |
| AspLEI | GCGC | 3 cut(s) | 1864, 1866, 2196 |
| AspS9I | GGNCC | 6 cut(s) | 2375, 2909, 3301, 4009, 4376, 4444 |
| AsuC2I | CCSGG | 1 cut(s) | 1173 |
| AsuII | TTCGAA | 1 cut(s) | 2860 |
| AvaI | CYCGRG | 2 cut(s) | 3858, 4731 |
| AvaII | GGWCC | 3 cut(s) | 2375, 2909, 4009 |
| AxyI | CCTNAGG | 1 cut(s) | 3382 |
| BaeGI | GKGCMC | 1 cut(s) | 1447 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1992, 2025, 3687, 3720 |
| BalI | TGGCCA | 2 cut(s) | 3486, 4054 |
| BamHI | GGATCC | 3 cut(s) | 27, 1387, 3415 |
| BanI | GGYRCC | 2 cut(s) | 3922, 4075 |
| BanII | GRGCYC | 1 cut(s) | 2828 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1534, 1566 |
| BbrPI | CACGTG | 1 cut(s) | 3689 |
| BbsI | GAAGAC | 3 cut(s) | 299, 1956, 4342 |
| Bbv12I | GWGCWC | 2 cut(s) | 1447, 2828 |
| BbvCI | CCTCAGC | 2 cut(s) | 894, 1884 |
| BceAI | ACGGC | 2 cut(s) | 1921, 3477 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4057, 4091 |
| BciVI | GTATCC | 1 cut(s) | 2059 |
| BclI | TGATCA | 5 cut(s) | 226, 1072, 1090, 2539, 3634 |
| BcnI | CCSGG | 1 cut(s) | 1173 |
| BfrI | CTTAAG | 1 cut(s) | 4502 |
| BfuAI | ACCTGC | 3 cut(s) | 1058, 1611, 4487 |
| BfuI | GTATCC | 1 cut(s) | 2059 |
| BlpI | GCTNAGC | 1 cut(s) | 714 |
| Bme18I | GGWCC | 3 cut(s) | 2375, 2909, 4009 |
| BmeT110I | CYCGRG | 2 cut(s) | 3858, 4731 |
| BmgBI | CACGTC | 1 cut(s) | 1802 |
| BmgT120I | GGNCC | 6 cut(s) | 2375, 2909, 3301, 4009, 4376, 4444 |
| BmrI | ACTGGG | 4 cut(s) | 2475, 2800, 3354, 4441 |
| BmuI | ACTGGG | 4 cut(s) | 2475, 2800, 3354, 4441 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3622 |
| BpiI | GAAGAC | 3 cut(s) | 299, 1956, 4342 |
| BpmI | CTGGAG | 5 cut(s) | 953, 1190, 1459, 1712, 3258 |
| Bpu10I | CCTNAGC | 2 cut(s) | 894, 1884 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 714 |
| Bpu14I | TTCGAA | 1 cut(s) | 2860 |
| BpuMI | CCSGG | 1 cut(s) | 1173 |
| BsaAI | YACGTR | 1 cut(s) | 3689 |
| BsaHI | GRCGYC | 1 cut(s) | 2385 |
| BsaI | GGTCTC | 3 cut(s) | 247, 1767, 4141 |
| BsaJI | CCNNGG | 8 cut(s) | 1005, 1194, 1675, 2004, 3165, 3459, 4184, 4316 |
| BsaWI | WCCGGW | 2 cut(s) | 818, 1484 |
| Bse118I | RCCGGY | 1 cut(s) | 1484 |
| Bse21I | CCTNAGG | 1 cut(s) | 3382 |
| Bse3DI | GCAATG | 5 cut(s) | 208, 1414, 1908, 3555, 4856 |
| BseDI | CCNNGG | 8 cut(s) | 1005, 1194, 1675, 2004, 3165, 3459, 4184, 4316 |
| BseMI | GCAATG | 5 cut(s) | 208, 1414, 1908, 3555, 4856 |
| BsePI | GCGCGC | 1 cut(s) | 1862 |
| BseRI | GAGGAG | 5 cut(s) | 882, 1511, 2089, 2231, 4856 |
| BseSI | GKGCMC | 1 cut(s) | 1447 |
| BseYI | CCCAGC | 2 cut(s) | 725, 2763 |
| BsgI | GTGCAG | 7 cut(s) | 818, 1058, 1589, 2210, 3563, 4365, 4400 |
| Bsh1236I | CGCG | 2 cut(s) | 397, 1864 |
| BshNI | GGYRCC | 2 cut(s) | 3922, 4075 |
| BshTI | ACCGGT | 1 cut(s) | 1484 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1447, 2828 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3858, 4731 |
| BsiSI | CCGG | 3 cut(s) | 819, 1172, 1485 |
| BslFI | GGGAC | 7 cut(s) | 432, 552, 2291, 2780, 2802, 3847, 4779 |
| BsmBI | CGTCTC | 1 cut(s) | 2604 |
| BsmFI | GGGAC | 7 cut(s) | 432, 552, 2291, 2780, 2802, 3847, 4779 |
| BsmI | GAATGC | 4 cut(s) | 1695, 2092, 3330, 4679 |
| Bso31I | GGTCTC | 3 cut(s) | 247, 1767, 4141 |
| BsoBI | CYCGRG | 2 cut(s) | 3858, 4731 |
| Bsp119I | TTCGAA | 1 cut(s) | 2860 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1447, 2828 |
| Bsp1407I | TGTACA | 1 cut(s) | 1956 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 714 |
| Bsp19I | CCATGG | 1 cut(s) | 4184 |
| Bsp68I | TCGCGA | 1 cut(s) | 397 |
| BspACI | CCGC | 6 cut(s) | 77, 521, 1425, 1592, 1732, 4385 |
| BspFNI | CGCG | 2 cut(s) | 397, 1864 |
| BspHI | TCATGA | 1 cut(s) | 1744 |
| BspMAI | CTGCAG | 5 cut(s) | 709, 1245, 3955, 4472, 4484 |
| BspMI | ACCTGC | 3 cut(s) | 1058, 1611, 4487 |
| BspQI | GCTCTTC | 2 cut(s) | 155, 1321 |
| BspT104I | TTCGAA | 1 cut(s) | 2860 |
| BspT107I | GGYRCC | 2 cut(s) | 3922, 4075 |
| BspTI | CTTAAG | 1 cut(s) | 4502 |
| BspTNI | GGTCTC | 3 cut(s) | 247, 1767, 4141 |
| BsrDI | GCAATG | 5 cut(s) | 208, 1414, 1908, 3555, 4856 |
| BsrFI | RCCGGY | 1 cut(s) | 1484 |
| BsrGI | TGTACA | 1 cut(s) | 1956 |
| BssAI | RCCGGY | 1 cut(s) | 1484 |
| BssECI | CCNNGG | 8 cut(s) | 1005, 1194, 1675, 2004, 3165, 3459, 4184, 4316 |
| BssHII | GCGCGC | 1 cut(s) | 1862 |
| BssNAI | GTATAC | 1 cut(s) | 237 |
| BssNI | GRCGYC | 1 cut(s) | 2385 |
| BssT1I | CCWWGG | 4 cut(s) | 1005, 1194, 4184, 4316 |
| Bst1107I | GTATAC | 1 cut(s) | 237 |
| Bst6I | CTCTTC | 6 cut(s) | 155, 1321, 1344, 1621, 1982, 3273 |
| BstACI | GRCGYC | 1 cut(s) | 2385 |
| BstAFI | CTTAAG | 1 cut(s) | 4502 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 601, 3541, 3947, 4369, 4409 |
| BstAUI | TGTACA | 1 cut(s) | 1956 |
| BstBAI | YACGTR | 1 cut(s) | 3689 |
| BstBI | TTCGAA | 1 cut(s) | 2860 |
| BstDSI | CCRYGG | 3 cut(s) | 3165, 3459, 4184 |
| BstEII | GGTNACC | 1 cut(s) | 3562 |
| BstFNI | CGCG | 2 cut(s) | 397, 1864 |
| BstHHI | GCGC | 3 cut(s) | 1864, 1866, 2196 |
| BstNSI | RCATGY | 6 cut(s) | 1561, 1957, 2200, 2903, 3070, 3290 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3622 |
| BstPI | GGTNACC | 1 cut(s) | 3562 |
| BstSLI | GKGCMC | 1 cut(s) | 1447 |
| BstUI | CGCG | 2 cut(s) | 397, 1864 |
| BstV2I | GAAGAC | 3 cut(s) | 299, 1956, 4342 |
| BstX2I | RGATCY | 8 cut(s) | 27, 206, 1187, 1339, 1387, 3415, 3583, 3733 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3245, 3482 |
| BstYI | RGATCY | 8 cut(s) | 27, 206, 1187, 1339, 1387, 3415, 3583, 3733 |
| BstZ17I | GTATAC | 1 cut(s) | 237 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3382 |
| BsuI | GTATCC | 1 cut(s) | 2059 |
| BtgI | CCRYGG | 3 cut(s) | 3165, 3459, 4184 |
| BtrI | CACGTC | 1 cut(s) | 1802 |
| BtsI | GCAGTG | 2 cut(s) | 1608, 4820 |
| BtuMI | TCGCGA | 1 cut(s) | 397 |
| BveI | ACCTGC | 3 cut(s) | 1058, 1611, 4487 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1327, 2939, 4409, 4822 |
| CciI | TCATGA | 1 cut(s) | 1744 |
| CfoI | GCGC | 3 cut(s) | 1864, 1866, 2196 |
| Cfr10I | RCCGGY | 1 cut(s) | 1484 |
| Cfr13I | GGNCC | 6 cut(s) | 2375, 2909, 3301, 4009, 4376, 4444 |
| CseI | GACGC | 2 cut(s) | 381, 2374 |
| CsiI | ACCWGGT | 1 cut(s) | 1537 |
| CspAI | ACCGGT | 1 cut(s) | 1484 |
| DraI | TTTAAA | 1 cut(s) | 1179 |
| DraIII | CACNNNGTG | 2 cut(s) | 3080, 4195 |
| EaeI | YGGCCR | 2 cut(s) | 3484, 4052 |
| Eam1104I | CTCTTC | 6 cut(s) | 155, 1321, 1344, 1621, 1982, 3273 |
| EarI | CTCTTC | 6 cut(s) | 155, 1321, 1344, 1621, 1982, 3273 |
| EciI | GGCGGA | 1 cut(s) | 1607 |
| Ecl136II | GAGCTC | 1 cut(s) | 2826 |
| Eco130I | CCWWGG | 4 cut(s) | 1005, 1194, 4184, 4316 |
| Eco24I | GRGCYC | 1 cut(s) | 2828 |
| Eco31I | GGTCTC | 3 cut(s) | 247, 1767, 4141 |
| Eco32I | GATATC | 1 cut(s) | 4141 |
| Eco47I | GGWCC | 3 cut(s) | 2375, 2909, 4009 |
| Eco53kI | GAGCTC | 1 cut(s) | 2826 |
| Eco57I | CTGAAG | 7 cut(s) | 311, 498, 507, 623, 1029, 3250, 3870 |
| Eco72I | CACGTG | 1 cut(s) | 3689 |
| Eco81I | CCTNAGG | 1 cut(s) | 3382 |
| Eco88I | CYCGRG | 2 cut(s) | 3858, 4731 |
| Eco91I | GGTNACC | 1 cut(s) | 3562 |
| EcoICRI | GAGCTC | 1 cut(s) | 2826 |
| EcoO65I | GGTNACC | 1 cut(s) | 3562 |
| EcoRI | GAATTC | 2 cut(s) | 685, 4111 |
| EcoRV | GATATC | 1 cut(s) | 4141 |
| EcoT14I | CCWWGG | 4 cut(s) | 1005, 1194, 4184, 4316 |
| EcoT22I | ATGCAT | 4 cut(s) | 436, 2820, 2905, 4783 |
| EcoT38I | GRGCYC | 1 cut(s) | 2828 |
| ErhI | CCWWGG | 4 cut(s) | 1005, 1194, 4184, 4316 |
| Esp3I | CGTCTC | 1 cut(s) | 2604 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 152, 184 |
| FaqI | GGGAC | 7 cut(s) | 432, 552, 2291, 2780, 2802, 3847, 4779 |
| FauI | CCCGC | 2 cut(s) | 1418, 1725 |
| FauNDI | CATATG | 2 cut(s) | 2094, 2290 |
| FbaI | TGATCA | 5 cut(s) | 226, 1072, 1090, 2539, 3634 |
| FblI | GTMKAC | 2 cut(s) | 236, 1896 |
| FriOI | GRGCYC | 1 cut(s) | 2828 |
| GlaI | GCGC | 3 cut(s) | 1863, 1865, 2195 |
| GsaI | CCCAGC | 2 cut(s) | 729, 2767 |
| GsuI | CTGGAG | 5 cut(s) | 953, 1190, 1459, 1712, 3258 |
| HapII | CCGG | 3 cut(s) | 819, 1172, 1485 |
| HgaI | GACGC | 2 cut(s) | 381, 2374 |
| HhaI | GCGC | 3 cut(s) | 1864, 1866, 2196 |
| Hin1I | GRCGYC | 1 cut(s) | 2385 |
| Hin6I | GCGC | 3 cut(s) | 1862, 1864, 2194 |
| HinP1I | GCGC | 3 cut(s) | 1862, 1864, 2194 |
| HincII | GTYRAC | 4 cut(s) | 1002, 1805, 2440, 3011 |
| HindII | GTYRAC | 4 cut(s) | 1002, 1805, 2440, 3011 |
| HindIII | AAGCTT | 4 cut(s) | 489, 2177, 3747, 3852 |
| HpaII | CCGG | 3 cut(s) | 819, 1172, 1485 |
| Hpy99I | CGWCG | 1 cut(s) | 397 |
| HpyCH4IV | ACGT | 3 cut(s) | 1801, 2993, 3688 |
| HpySE526I | ACGT | 3 cut(s) | 1801, 2993, 3688 |
| Hsp92I | GRCGYC | 1 cut(s) | 2385 |
| HspAI | GCGC | 3 cut(s) | 1862, 1864, 2194 |
| KpnI | GGTACC | 1 cut(s) | 3926 |
| Ksp22I | TGATCA | 5 cut(s) | 226, 1072, 1090, 2539, 3634 |
| LguI | GCTCTTC | 2 cut(s) | 155, 1321 |
| MabI | ACCWGGT | 1 cut(s) | 1537 |
| MaeII | ACGT | 3 cut(s) | 1801, 2993, 3688 |
| MfeI | CAATTG | 2 cut(s) | 2036, 3476 |
| MflI | RGATCY | 8 cut(s) | 27, 206, 1187, 1339, 1387, 3415, 3583, 3733 |
| MhlI | GDGCHC | 2 cut(s) | 1447, 2828 |
| MlsI | TGGCCA | 2 cut(s) | 3486, 4054 |
| MluNI | TGGCCA | 2 cut(s) | 3486, 4054 |
| MlyI | GAGTC | 4 cut(s) | 241, 3812, 3820, 3994 |
| MmeI | TCCRAC | 8 cut(s) | 196, 493, 519, 1542, 1767, 2011, 4567, 4665 |
| Mox20I | TGGCCA | 2 cut(s) | 3486, 4054 |
| Mph1103I | ATGCAT | 4 cut(s) | 436, 2820, 2905, 4783 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4278 |
| MscI | TGGCCA | 2 cut(s) | 3486, 4054 |
| MslI | CAYNNNNRTG | 2 cut(s) | 201, 3435 |
| Msp20I | TGGCCA | 2 cut(s) | 3486, 4054 |
| MspA1I | CMGCKG | 4 cut(s) | 1732, 2399, 3371, 4064 |
| MspCI | CTTAAG | 1 cut(s) | 4502 |
| MspI | CCGG | 3 cut(s) | 819, 1172, 1485 |
| MunI | CAATTG | 2 cut(s) | 2036, 3476 |
| Mva1269I | GAATGC | 4 cut(s) | 1695, 2092, 3330, 4679 |
| MvnI | CGCG | 2 cut(s) | 397, 1864 |
| NciI | CCSGG | 1 cut(s) | 1173 |
| NcoI | CCATGG | 1 cut(s) | 4184 |
| NdeI | CATATG | 2 cut(s) | 2094, 2290 |
| NmuCI | GTSAC | 9 cut(s) | 481, 1533, 2464, 3437, 3562, 4175, 4195, 4429, 4807 |
| NruI | TCGCGA | 1 cut(s) | 397 |
| NsiI | ATGCAT | 4 cut(s) | 436, 2820, 2905, 4783 |
| NspI | RCATGY | 6 cut(s) | 1561, 1957, 2200, 2903, 3070, 3290 |
| NspV | TTCGAA | 1 cut(s) | 2860 |
| PaeI | GCATGC | 2 cut(s) | 3070, 3290 |
| PagI | TCATGA | 1 cut(s) | 1744 |
| PaqCI | CACCTGC | 1 cut(s) | 1058 |
| PauI | GCGCGC | 1 cut(s) | 1862 |
| PciI | ACATGT | 2 cut(s) | 1557, 1953 |
| PciSI | GCTCTTC | 2 cut(s) | 155, 1321 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1798, 4604 |
| PctI | GAATGC | 4 cut(s) | 1695, 2092, 3330, 4679 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4278 |
| PflFI | GACNNNGTC | 1 cut(s) | 4791 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 3080, 3344, 4684 |
| PfoI | TCCNGGA | 1 cut(s) | 934 |
| PinAI | ACCGGT | 1 cut(s) | 1484 |
| PleI | GAGTC | 4 cut(s) | 241, 3811, 3819, 3993 |
| PmaCI | CACGTG | 1 cut(s) | 3689 |
| PmlI | CACGTG | 1 cut(s) | 3689 |
| PpsI | GAGTC | 4 cut(s) | 241, 3811, 3819, 3993 |
| Ppu21I | YACGTR | 1 cut(s) | 3689 |
| PscI | ACATGT | 2 cut(s) | 1557, 1953 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3622 |
| PshBI | ATTAAT | 1 cut(s) | 1944 |
| Psp124BI | GAGCTC | 1 cut(s) | 2828 |
| Psp1406I | AACGTT | 1 cut(s) | 2993 |
| PspCI | CACGTG | 1 cut(s) | 3689 |
| PspEI | GGTNACC | 1 cut(s) | 3562 |
| PspFI | CCCAGC | 2 cut(s) | 725, 2763 |
| PspPI | GGNCC | 6 cut(s) | 2375, 2909, 3301, 4009, 4376, 4444 |
| PstI | CTGCAG | 5 cut(s) | 709, 1245, 3955, 4472, 4484 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1327, 2939, 4409, 4822 |
| PsuI | RGATCY | 8 cut(s) | 27, 206, 1187, 1339, 1387, 3415, 3583, 3733 |
| PsyI | GACNNNGTC | 1 cut(s) | 4791 |
| PteI | GCGCGC | 1 cut(s) | 1862 |
| PvuII | CAGCTG | 3 cut(s) | 2399, 3371, 4064 |
| RruI | TCGCGA | 1 cut(s) | 397 |
| RseI | CAYNNNNRTG | 2 cut(s) | 201, 3435 |
| SacI | GAGCTC | 1 cut(s) | 2828 |
| SapI | GCTCTTC | 2 cut(s) | 155, 1321 |
| Sau96I | GGNCC | 6 cut(s) | 2375, 2909, 3301, 4009, 4376, 4444 |
| SbfI | CCTGCAGG | 1 cut(s) | 1245 |
| SchI | GAGTC | 4 cut(s) | 241, 3812, 3820, 3994 |
| SdaI | CCTGCAGG | 1 cut(s) | 1245 |
| SduI | GDGCHC | 2 cut(s) | 1447, 2828 |
| SexAI | ACCWGGT | 1 cut(s) | 1537 |
| SfuI | TTCGAA | 1 cut(s) | 2860 |
| SinI | GGWCC | 3 cut(s) | 2375, 2909, 4009 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 201, 3435 |
| SphI | GCATGC | 2 cut(s) | 3070, 3290 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1245 |
| SsiI | CCGC | 6 cut(s) | 77, 521, 1425, 1592, 1732, 4385 |
| SstI | GAGCTC | 1 cut(s) | 2828 |
| StyI | CCWWGG | 4 cut(s) | 1005, 1194, 4184, 4316 |
| TaiI | ACGT | 3 cut(s) | 1804, 2996, 3691 |
| TaqI | TCGA | 5 cut(s) | 2860, 3206, 4324, 4607, 4786 |
| TaqII | GACCGA | 1 cut(s) | 3581 |
| TatI | WGTACW | 4 cut(s) | 365, 1021, 1079, 1956 |
| TauI | GCSGC | 1 cut(s) | 523 |
| TseFI | GTSAC | 9 cut(s) | 481, 1533, 2464, 3437, 3562, 4175, 4195, 4429, 4807 |
| Tsp45I | GTSAC | 9 cut(s) | 481, 1533, 2464, 3437, 3562, 4175, 4195, 4429, 4807 |
| TspGWI | ACGGA | 5 cut(s) | 1541, 3930, 4151, 4444, 4613 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4791 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 3080, 3344, 4684 |
| Vha464I | CTTAAG | 1 cut(s) | 4502 |
| VneI | GTGCAC | 1 cut(s) | 1443 |
| VpaK11BI | GGWCC | 3 cut(s) | 2375, 2909, 4009 |
| VspI | ATTAAT | 1 cut(s) | 1944 |
| XbaI | TCTAGA | 1 cut(s) | 1336 |
| XceI | RCATGY | 6 cut(s) | 1561, 1957, 2200, 2903, 3070, 3290 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 2396, 2760, 3105, 3245 |
| XmiI | GTMKAC | 2 cut(s) | 236, 1896 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4278 |
| Zsp2I | ATGCAT | 4 cut(s) | 436, 2820, 2905, 4783 |