Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8475311.1

Orthogroup ID

OG0005590

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2015

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8475311.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 457 bp

tctctctctctctctctctctctccccgattcgaacccccaccgcttcggttagcgacggactccgaagatcagttccgaccttcaacggcggccgcgcggcgtcactgttaatttatttgaactcagaacatggcagttggagtgactctaaaatatactggaacaaggtagttttttctcaaaagaactttagctgctgcaattttgtggctggattatctatgcctggaaacgaagttggagacagggtccacaatttctttggccaagagaacttgtcacagggtcagcgtcatccgcaggccactgacgggaactggcctggtctaagtaacaatttgtgggttgggaaccagagacaagttggatctcctgttaactcaagtttaaagagttacaatatacaaccaggtattactaactttaactctaggcccttctttaattttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.67

Weight (kDa)

9.69

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29385
fragaria_vesca	FvH4_6g46950 FvH4_6g46950
malus_domestica	MD09G1065800.v1.1 MD17G1058500.v1.1
prunus_persica	Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1 Prupe.3G255600_v2.0.a1
pyrus_communis	pycom111g05540 pycom17g05860
rosa_chinensis	RchiOBHm_Chr2g0165931
rosa_laevigata	RLG00000021570
rosa_multiflora	Rmu_co8475311.1_g000001 Rmu_sc0006218.1_g000011
rosa_roxburghii	Rroxscaffold_2G00085300
rosa_rugosa	Rorug02G0519300
rosa_samantha	Rh2AG584900 Rh2BG596700 Rh2CG567500 Rh2DG606900
rosa_wichuraiana	Rw2G048770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	97, 99
AciI	CCGC	5 cut(s)	43, 91, 95, 99, 300
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	2 cut(s)	92, 266
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	86, 122
AjnI	CCWGG	3 cut(s)	227, 323, 410
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw26I	GTCTC	2 cut(s)	238, 353
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	5 cut(s)	92, 266, 304, 321, 435
ApeKI	GCWGC	2 cut(s)	196, 199
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	2 cut(s)	251, 436
AsuII	TTCGAA	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	183, 186
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	3 cut(s)	229, 325, 412
BcoDI	GTCTC	2 cut(s)	238, 353
BfaI	CTAG	1 cut(s)	433
BisI	GCNGC	5 cut(s)	92, 95, 100, 197, 200
BlsI	GCNGC	5 cut(s)	93, 96, 101, 198, 201
Bme1390I	CCNGG	3 cut(s)	229, 325, 412
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	251, 436
BmiI	GGNNCC	2 cut(s)	252, 354
BmrFI	CCNGG	3 cut(s)	229, 325, 412
Bpu14I	TTCGAA	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
Bse1I	ACTGG	2 cut(s)	165, 324
BseBI	CCWGG	3 cut(s)	229, 325, 412
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	165, 324
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	183, 186
Bsh1236I	CGCG	2 cut(s)	97, 99
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	5 cut(s)	94, 268, 306, 323, 437
BsiEI	CGRYCG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	2 cut(s)	238, 353
BsnI	GGCC	5 cut(s)	94, 268, 306, 323, 437
Bsp119I	TTCGAA	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	69, 369
BspACI	CCGC	5 cut(s)	43, 91, 95, 99, 300
BspANI	GGCC	5 cut(s)	94, 268, 306, 323, 437
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	97, 99
BspLI	GGNNCC	2 cut(s)	252, 354
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	165, 324
BssMI	GATC	2 cut(s)	69, 369
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	3 cut(s)	229, 325, 412
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	125, 330
BstF5I	GGATG	1 cut(s)	296
BstFNI	CGCG	2 cut(s)	97, 99
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	72, 372
BstMAI	GTCTC	2 cut(s)	238, 353
BstMBI	GATC	2 cut(s)	69, 369
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	3 cut(s)	229, 325, 412
BstSCI	CCNGG	3 cut(s)	227, 323, 410
BstUI	CGCG	2 cut(s)	97, 99
BstV1I	GCAGC	2 cut(s)	183, 186
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BstZI	CGGCCG	1 cut(s)	92
BsuRI	GGCC	5 cut(s)	94, 268, 306, 323, 437
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	105, 307
Cac8I	GCNNGC	1 cut(s)	304
CciNI	GCGGCCGC	1 cut(s)	92
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	251, 436
CseI	GACGC	2 cut(s)	91, 282
CsiI	ACCWGGT	1 cut(s)	410
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	7 cut(s)	94, 196, 213, 268, 306, 323, 437
CviKI_1	RGCY	7 cut(s)	94, 196, 213, 268, 306, 323, 437
DdeI	CTNAG	2 cut(s)	125, 330
DpnI	GATC	2 cut(s)	71, 371
DpnII	GATC	2 cut(s)	69, 369
DraI	TTTAAA	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	92, 266
EagI	CGGCCG	1 cut(s)	92
EclXI	CGGCCG	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	251
Eco52I	CGGCCG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	3 cut(s)	227, 323, 410
FaeI	CATG	1 cut(s)	135
FaiI	YATR	4 cut(s)	133, 158, 225, 405
FatI	CATG	1 cut(s)	131
Fnu4HI	GCNGC	5 cut(s)	92, 95, 100, 197, 200
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	5 cut(s)	92, 95, 100, 197, 200
FspBI	CTAG	1 cut(s)	433
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	5 cut(s)	92, 95, 100, 197, 200
HaeIII	GGCC	5 cut(s)	94, 268, 306, 323, 437
HgaI	GACGC	2 cut(s)	91, 282
HhaI	GCGC	1 cut(s)	99
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	380
HindII	GTYRAC	1 cut(s)	380
HinfI	GANTC	3 cut(s)	29, 61, 147
HpaI	GTTAAC	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	254, 380
Hpy188I	TCNGA	3 cut(s)	66, 79, 128
Hpy8I	GTNNAC	2 cut(s)	254, 380
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	92, 449
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	125, 330
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	135
HspAI	GCGC	1 cut(s)	97
KspAI	GTTAAC	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	69, 369
Lsp1109I	GCAGC	2 cut(s)	183, 186
MabI	ACCWGGT	1 cut(s)	410
MaeI	CTAG	1 cut(s)	433
MaeIII	GTNAC	5 cut(s)	103, 144, 280, 333, 396
MalI	GATC	2 cut(s)	71, 371
MboI	GATC	2 cut(s)	69, 369
MboII	GAAGA	1 cut(s)	79
MflI	RGATCY	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	5 cut(s)	112, 203, 257, 338, 446
MluNI	TGGCCA	1 cut(s)	268
MlyI	GAGTC	2 cut(s)	55, 141
MmeI	TCCRAC	4 cut(s)	102, 120, 221, 347
Mox20I	TGGCCA	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	6 cut(s)	111, 379, 390, 427, 445, 455
Msp20I	TGGCCA	1 cut(s)	268
MspR9I	CCNGG	3 cut(s)	229, 325, 412
MvaI	CCWGG	3 cut(s)	229, 325, 412
MvnI	CGCG	2 cut(s)	97, 99
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	2 cut(s)	69, 369
NlaIII	CATG	1 cut(s)	135
NlaIV	GGNNCC	2 cut(s)	252, 354
NmuCI	GTSAC	3 cut(s)	103, 144, 280
NotI	GCGGCCGC	1 cut(s)	92
NspV	TTCGAA	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	29
PflFI	GACNNNGTC	1 cut(s)	249
PkrI	GCNGC	5 cut(s)	93, 96, 101, 198, 201
PleI	GAGTC	2 cut(s)	55, 141
PpsI	GAGTC	2 cut(s)	55, 141
Psp6I	CCWGG	3 cut(s)	227, 323, 410
PspGI	CCWGG	3 cut(s)	227, 323, 410
PspN4I	GGNNCC	2 cut(s)	252, 354
PspPI	GGNCC	2 cut(s)	251, 436
PsuI	RGATCY	1 cut(s)	369
PsyI	GACNNNGTC	1 cut(s)	249
SaqAI	TTAA	6 cut(s)	111, 379, 390, 427, 445, 455
SatI	GCNGC	5 cut(s)	92, 95, 100, 197, 200
Sau3AI	GATC	2 cut(s)	69, 369
Sau96I	GGNCC	2 cut(s)	251, 436
SchI	GAGTC	2 cut(s)	55, 141
ScrFI	CCNGG	3 cut(s)	229, 325, 412
SetI	ASST	4 cut(s)	84, 172, 198, 416
SexAI	ACCWGGT	1 cut(s)	410
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	5 cut(s)	112, 203, 257, 338, 446
SsiI	CCGC	5 cut(s)	43, 91, 95, 99, 300
SspMI	CTAG	1 cut(s)	433
StyD4I	CCNGG	3 cut(s)	227, 323, 410
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	32
TasI	AATT	5 cut(s)	112, 203, 257, 338, 446
TauI	GCSGC	3 cut(s)	94, 97, 102
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	6 cut(s)	111, 379, 390, 427, 445, 455
Tru9I	TTAA	6 cut(s)	111, 379, 390, 427, 445, 455
TscAI	CASTG	2 cut(s)	112, 314
TseFI	GTSAC	3 cut(s)	103, 144, 280
TseI	GCWGC	2 cut(s)	196, 199
Tsp45I	GTSAC	3 cut(s)	103, 144, 280
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	112, 314
Tth111I	GACNNNGTC	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	2 cut(s)	261, 363
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.