FvH4_6g48720

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017353
Physical Location & Seq
Reverse (-)
36645815 .. 36646612
798 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g48720.t1

Sequence Viewer

Length: 798 bp
ATGGATGATGAGATCAACGTTTCCAGGGAAAACAGGTTCGATTTCCATCTGATTGCAAAATTACTTGAACGTGACGACCCAGAATTACTTAACCCCGACGTTAGAGTATTATCAGTTGATGTGGAGTTCTACTCTGCTGTCCTTCACTTGGTCTTCGATCATTCTCCATCAGCTGATAATGTACCCAGAAGCTGGTTTCTTACTGATGAGAAGAAAACAATATGCGGATGTGATTTGCGCAGCTTGTCTTCGTCGATGTCTGCAGCAAACCCTAACATCACACCGGGACATGTTCTTCACGACATGTTTGTGAATAAAATTGTCAGCTTTGTGAACAAATATTCTGGCCCCGAGTATATTAGTTGGTACAAGAAATTGACCGTGGAGGTTTACATAACTGAATACGTATACGATCGCTGCGAGTGCGAGGAGTGTAGAGCTATAAGGGAATCGGCCTTGATGGCAGAAGAAAAGTTGACAGTACCTGCGAGTGAGTCATCGATCAAGAAGCTACTGAAGAAGATTAGAGTAGCGGCCGCAGCTGACTTGGAGGAGGATCATGAGGATCGTCAAGGAAAGAGAAGCAAGAGTGGTAACAAAGTCGGTGCAAGGCCAAGTGATAGTGATGACTGTACTATCTGTTGTGATGAGTTTACTGCCGGAAAGTATGCTGCTCAAATGCCATGTTTGCATTCGTTTCATAAACCGTGCATTCAGACATGGCTGAGAAGGAGTCACTATTGCCCTATGTGCCGATATGAGATGCCGGTTGCTGGTGATGGTCAAGAAGATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

266

Amino Acids

30.13

Weight (kDa)

5.33

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 209 - 252 1e-12 Ring finger domain
zf-RING_11 PF17123 210 - 238 1.7e-06 RING-like zinc finger
zf-C3HC4_2 PF13923 211 - 251 5e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 211 - 251 9.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 211 - 252 1.8e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017353)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g48720
rosa_chinensis RchiOBHm_Chr2g0168641
rosa_laevigata RLG00000021793
rosa_multiflora Rmu_co8317429.1_g000001 Rmu_sc0002416.1_g000008
rosa_roxburghii Rroxscaffold_2G00082820
rosa_rugosa Rorug02G0534300 Rorug02G0545200
rosa_samantha Rh2AG605000 Rh2BG618000 Rh2CG586200 Rh2DG628600
rosa_wichuraiana Rw2G050150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 493
AccB7I CCANNNNNTGG 1 cut(s) 192
AccI GTMKAC 1 cut(s) 408
AciI CCGC 3 cut(s) 225, 533, 537
AclI AACGTT 1 cut(s) 18
AclWI GGATC 2 cut(s) 564, 573
AcoI YGGCCR 1 cut(s) 534
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 4 cut(s) 183, 368, 483, 634
AfiI CCNNNNNNNGG 3 cut(s) 148, 192, 773
AflIII ACRYGT 2 cut(s) 289, 303
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 1 cut(s) 23
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 7 cut(s) 173, 192, 243, 327, 440, 511, 542
AluI AGCT 7 cut(s) 173, 192, 243, 327, 440, 511, 542
AlwI GGATC 2 cut(s) 564, 573
AlwNI CAGNNNCTG 2 cut(s) 192, 485
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 4 cut(s) 346, 453, 534, 611
ApeKI GCWGC 5 cut(s) 240, 263, 417, 539, 671
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 347
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 788
AvaI CYCGRG 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 145, 240
BbvI GCAGC 5 cut(s) 252, 275, 404, 551, 658
BccI CCATC 5 cut(s) 54, 175, 454, 773, 785
BciT130I CCWGG 1 cut(s) 25
BcnI CCSGG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 493
BglI GCCNNNNNGGC 1 cut(s) 461
BisI GCNGC 7 cut(s) 241, 264, 418, 534, 537, 540, 672
BlsI GCNGC 7 cut(s) 242, 265, 419, 535, 538, 541, 673
Bme1390I CCNGG 2 cut(s) 25, 285
BmeT110I CYCGRG 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 2 cut(s) 25, 285
BmsI GCATC 1 cut(s) 753
BpiI GAAGAC 2 cut(s) 145, 240
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpuMI CCSGG 1 cut(s) 285
Bsa29I ATCGAT 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 406
BsaBI GATNNNNATC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 24, 381
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 192, 773
Bse118I RCCGGY 1 cut(s) 766
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 500
BseDI CCNNGG 2 cut(s) 24, 381
BseGI GGATG 2 cut(s) 10, 233
BseJI GATNNNNATC 1 cut(s) 45
BseLI CCNNNNNNNGG 3 cut(s) 148, 192, 773
BseMII CTCAG 1 cut(s) 716
BseRI GAGGAG 2 cut(s) 443, 566
BseX3I CGGCCG 1 cut(s) 534
BseXI GCAGC 5 cut(s) 252, 275, 404, 551, 658
Bsh1285I CGRYCG 2 cut(s) 415, 537
BshFI GGCC 4 cut(s) 348, 455, 536, 613
BshVI ATCGAT 1 cut(s) 500
BsiEI CGRYCG 2 cut(s) 415, 537
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 3 cut(s) 284, 660, 767
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 3 cut(s) 148, 192, 773
BsmFI GGGAC 1 cut(s) 300
BsmI GAATGC 2 cut(s) 691, 711
BsnI GGCC 4 cut(s) 348, 455, 536, 613
BsoBI CYCGRG 1 cut(s) 350
Bsp143I GATC 6 cut(s) 12, 157, 412, 501, 556, 565
BspACI CCGC 3 cut(s) 225, 533, 537
BspANI GGCC 4 cut(s) 348, 455, 536, 613
BspCNI CTCAG 1 cut(s) 717
BspDI ATCGAT 1 cut(s) 500
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 2 cut(s) 564, 573
BsrFI RCCGGY 1 cut(s) 766
BssAI RCCGGY 1 cut(s) 766
BssECI CCNNGG 2 cut(s) 24, 381
BssMI GATC 6 cut(s) 12, 157, 412, 501, 556, 565
BssNAI GTATAC 1 cut(s) 409
Bst1107I GTATAC 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 4 cut(s) 382, 481, 632, 708
BstBAI YACGTR 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 725
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 10, 233
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 6 cut(s) 15, 160, 415, 504, 559, 568
BstMBI GATC 6 cut(s) 12, 157, 412, 501, 556, 565
BstMCI CGRYCG 2 cut(s) 415, 537
BstMWI GCNNNNNNNGC 5 cut(s) 423, 461, 539, 688, 750
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 293, 307
BstSCI CCNGG 2 cut(s) 23, 283
BstSFI CTRYAG 1 cut(s) 261
BstSNI TACGTA 1 cut(s) 406
BstV1I GCAGC 5 cut(s) 252, 275, 404, 551, 658
BstV2I GAAGAC 2 cut(s) 145, 240
BstZ17I GTATAC 1 cut(s) 409
BstZI CGGCCG 1 cut(s) 534
Bsu15I ATCGAT 1 cut(s) 500
BsuRI GGCC 4 cut(s) 348, 455, 536, 613
BsuTUI ATCGAT 1 cut(s) 500
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 10, 233
BveI ACCTGC 1 cut(s) 493
CaiI CAGNNNCTG 2 cut(s) 192, 485
CciI TCATGA 1 cut(s) 559
CciNI GCGGCCGC 1 cut(s) 534
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 766
Cfr13I GGNCC 1 cut(s) 347
ClaI ATCGAT 1 cut(s) 500
Csp6I GTAC 4 cut(s) 182, 367, 482, 633
CviAII CATG 5 cut(s) 290, 304, 560, 684, 720
CviQI GTAC 4 cut(s) 182, 367, 482, 633
DdeI CTNAG 1 cut(s) 725
DpnI GATC 6 cut(s) 14, 159, 414, 503, 558, 567
DpnII GATC 6 cut(s) 12, 157, 412, 501, 556, 565
EaeI YGGCCR 1 cut(s) 534
EagI CGGCCG 1 cut(s) 534
EclXI CGGCCG 1 cut(s) 534
Eco105I TACGTA 1 cut(s) 406
Eco52I CGGCCG 1 cut(s) 534
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 23
FaeI CATG 5 cut(s) 293, 307, 563, 687, 723
FaqI GGGAC 1 cut(s) 300
FatI CATG 5 cut(s) 289, 303, 559, 683, 719
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 7 cut(s) 241, 264, 418, 534, 537, 540, 672
FokI GGATG 2 cut(s) 17, 240
Fsp4HI GCNGC 7 cut(s) 241, 264, 418, 534, 537, 540, 672
FspI TGCGCA 1 cut(s) 239
GlaI GCGC 1 cut(s) 239
GluI GCNGC 7 cut(s) 241, 264, 418, 534, 537, 540, 672
HaeIII GGCC 4 cut(s) 348, 455, 536, 613
HapII CCGG 3 cut(s) 284, 660, 767
HhaI GCGC 1 cut(s) 240
Hin1II CATG 5 cut(s) 293, 307, 563, 687, 723
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 1 cut(s) 477
HindII GTYRAC 1 cut(s) 477
HinfI GANTC 3 cut(s) 449, 494, 733
HpaII CCGG 3 cut(s) 284, 660, 767
HphI GGTGA 1 cut(s) 788
Hpy166II GTNNAC 5 cut(s) 334, 391, 409, 477, 654
Hpy188I TCNGA 2 cut(s) 51, 717
Hpy188III TCNNGA 4 cut(s) 299, 505, 560, 785
Hpy8I GTNNAC 5 cut(s) 334, 391, 409, 477, 654
Hpy99I CGWCG 2 cut(s) 101, 256
HpyAV CCTTC 2 cut(s) 152, 723
HpyCH4III ACNGT 4 cut(s) 382, 481, 632, 708
HpyCH4IV ACGT 4 cut(s) 18, 70, 99, 405
HpyCH4V TGCA 5 cut(s) 56, 263, 608, 691, 711
HpyF10VI GCNNNNNNNGC 5 cut(s) 423, 461, 539, 688, 750
HpyF3I CTNAG 1 cut(s) 725
HpySE526I ACGT 4 cut(s) 18, 70, 99, 405
Hsp92II CATG 5 cut(s) 293, 307, 563, 687, 723
HspAI GCGC 1 cut(s) 238
Kzo9I GATC 6 cut(s) 12, 157, 412, 501, 556, 565
Lsp1109I GCAGC 5 cut(s) 252, 275, 404, 551, 658
LweI GCATC 1 cut(s) 753
MaeII ACGT 4 cut(s) 18, 70, 99, 405
MaeIII GTNAC 3 cut(s) 71, 593, 734
MalI GATC 6 cut(s) 14, 159, 414, 503, 558, 567
MboI GATC 6 cut(s) 12, 157, 412, 501, 556, 565
MboII GAAGA 7 cut(s) 145, 223, 240, 287, 479, 529, 532
MluCI AATT 4 cut(s) 59, 83, 318, 374
MlyI GAGTC 2 cut(s) 503, 742
MnlI CCTC 5 cut(s) 379, 421, 544, 547, 556
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 2 cut(s) 173, 542
MspI CCGG 3 cut(s) 284, 660, 767
MspR9I CCNGG 2 cut(s) 25, 285
Mva1269I GAATGC 2 cut(s) 691, 711
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 5 cut(s) 423, 461, 539, 688, 750
NciI CCSGG 1 cut(s) 285
NdeII GATC 6 cut(s) 12, 157, 412, 501, 556, 565
NlaIII CATG 5 cut(s) 293, 307, 563, 687, 723
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 2 cut(s) 71, 734
NotI GCGGCCGC 1 cut(s) 534
NsbI TGCGCA 1 cut(s) 239
NspI RCATGY 2 cut(s) 293, 307
PagI TCATGA 1 cut(s) 559
PciI ACATGT 2 cut(s) 289, 303
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PctI GAATGC 2 cut(s) 691, 711
PfeI GAWTC 1 cut(s) 449
PflMI CCANNNNNTGG 1 cut(s) 192
PkrI GCNGC 7 cut(s) 242, 265, 419, 535, 538, 541, 673
Ple19I CGATCG 1 cut(s) 415
PleI GAGTC 2 cut(s) 502, 741
PpsI GAGTC 2 cut(s) 502, 741
Ppu21I YACGTR 1 cut(s) 406
PscI ACATGT 2 cut(s) 289, 303
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 347
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 2 cut(s) 192, 485
PvuI CGATCG 1 cut(s) 415
PvuII CAGCTG 2 cut(s) 173, 542
RsaI GTAC 4 cut(s) 183, 368, 483, 634
RsaNI GTAC 4 cut(s) 182, 367, 482, 633
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 7 cut(s) 241, 264, 418, 534, 537, 540, 672
Sau3AI GATC 6 cut(s) 12, 157, 412, 501, 556, 565
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 2 cut(s) 503, 742
ScrFI CCNGG 2 cut(s) 25, 285
SfaNI GCATC 1 cut(s) 753
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 308
SnaBI TACGTA 1 cut(s) 406
Sse9I AATT 4 cut(s) 59, 83, 318, 374
SsiI CCGC 3 cut(s) 225, 533, 537
SspI AATATT 1 cut(s) 341
StyD4I CCNGG 2 cut(s) 23, 283
TaaI ACNGT 4 cut(s) 382, 481, 632, 708
TaiI ACGT 4 cut(s) 21, 73, 102, 408
TaqI TCGA 4 cut(s) 39, 156, 254, 500
TasI AATT 4 cut(s) 59, 83, 318, 374
TatI WGTACW 1 cut(s) 632
TauI GCSGC 2 cut(s) 536, 539
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 2 cut(s) 71, 734
TseI GCWGC 5 cut(s) 240, 263, 417, 539, 671
Tsp45I GTSAC 2 cut(s) 71, 734
TspDTI ATGAA 1 cut(s) 689
Van91I CCANNNNNTGG 1 cut(s) 192
XceI RCATGY 2 cut(s) 293, 307
XmiI GTMKAC 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.