Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002416.1

Orthogroup ID

OG0017353

Physical Location & Seq

Genomic Coordinates Forward (+)

31446 .. 32288

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002416.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atggatgagatcatttacgaaaaaaaccagttccaattctatctggaagttagctaccttgaatgtgacgagacagaagtacctgactccgaagctccagtaccacttgaggttgtgttcaagtcccgtgtccttcgctacgccttcgatcattcttcagctacttttgatcccgctaacgactttgttagttgcgattacaagaagacaatatgtggatgttgtgatcttcgcatgttgtcttcgtcgacagagattctttctaagtcgatgtctgcagcaaaccctgatatcaaaccgggaagtgattttcacgatgagattgtgaataaaattgtcagagttgtcaaccgctactctgaatcccagtacattgattggatcaagctattgaaggtgaaagttgaaataactgaacaagtattggatcgctgcgagtgcgaggagtgtagagctataagggaatcgattttgatggcagagagggaagcagaaaagttaatagtacccgcgagtgagtcatcgatcaagaagctactgaagagggttagggtagtggccgcagacttggaggagggtcatgaaggtcgtcaaagaaaaagtagtcgtggcagtaagagtgataacaatgtagttgcaaggccaagtgatagcgattgctgtattgtttgttccgatgagtttactgctggaaagtatgcggttcaaatgccatgttcgcattcgtttcatagatcgtgcattgagaaatggctgagacggagtcaccattgccctatttgccgatatgagatgcccgtggctgatgttcaagaagatgtagagacattgttaagcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

280

Amino Acids

31.97

Weight (kDa)

5.18

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017353)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48720
rosa_chinensis	RchiOBHm_Chr2g0168641
rosa_laevigata	RLG00000021793
rosa_multiflora	Rmu_co8317429.1_g000001 Rmu_sc0002416.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082820
rosa_rugosa	Rorug02G0534300 Rorug02G0545200
rosa_samantha	Rh2AG605000 Rh2BG618000 Rh2CG586200 Rh2DG628600
rosa_wichuraiana	Rw2G050150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	248
AccII	CGCG	1 cut(s)	512
AciI	CCGC	5 cut(s)	174, 352, 510, 561, 701
AclWI	GGATC	3 cut(s)	164, 389, 435
AcoI	YGGCCR	1 cut(s)	558
AcuI	CTGAAG	2 cut(s)	141, 560
AfaI	GTAC	4 cut(s)	81, 102, 371, 507
AgsI	TTSAA	6 cut(s)	62, 121, 394, 407, 707, 812
AluBI	AGCT	7 cut(s)	54, 95, 161, 388, 455, 535, 840
AluI	AGCT	7 cut(s)	54, 95, 161, 388, 455, 535, 840
Alw26I	GTCTC	3 cut(s)	65, 751, 818
AlwI	GGATC	3 cut(s)	164, 389, 435
AoxI	GGCC	2 cut(s)	558, 641
ApeKI	GCWGC	3 cut(s)	278, 432, 837
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	409, 758
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BarI	GAAGNNNNNNTAC	2 cut(s)	84, 116
BbsI	GAAGAC	2 cut(s)	212, 234
BbvI	GCAGC	2 cut(s)	290, 419
BccI	CCATC	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	3 cut(s)	65, 751, 818
BfaI	CTAG	1 cut(s)	841
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	4 cut(s)	279, 433, 561, 838
BlsI	GCNGC	4 cut(s)	280, 434, 562, 839
Bme1390I	CCNGG	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	783
BmuI	ACTGGG	1 cut(s)	361
BpiI	GAAGAC	2 cut(s)	212, 234
BpmI	CTGGAG	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	300
Bsa29I	ATCGAT	2 cut(s)	467, 524
BsaJI	CCNNGG	1 cut(s)	798
Bse1I	ACTGG	3 cut(s)	28, 98, 367
Bse3DI	GCAATG	1 cut(s)	769
BseCI	ATCGAT	2 cut(s)	467, 524
BseDI	CCNNGG	1 cut(s)	798
BseGI	GGATG	2 cut(s)	10, 224
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	1 cut(s)	746
BseNI	ACTGG	3 cut(s)	28, 98, 367
BseRI	GAGGAG	2 cut(s)	458, 587
BseXI	GCAGC	2 cut(s)	290, 419
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	2 cut(s)	560, 643
BshVI	ATCGAT	2 cut(s)	467, 524
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	109
BsmAI	GTCTC	3 cut(s)	65, 751, 818
BsmBI	CGTCTC	1 cut(s)	751
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	2 cut(s)	560, 643
Bsp143I	GATC	8 cut(s)	9, 148, 169, 226, 381, 427, 525, 734
BspACI	CCGC	5 cut(s)	174, 352, 510, 561, 701
BspANI	GGCC	2 cut(s)	560, 643
BspCNI	CTCAG	1 cut(s)	747
BspDI	ATCGAT	2 cut(s)	467, 524
BspFNI	CGCG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	580
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	3 cut(s)	164, 389, 435
BsrDI	GCAATG	1 cut(s)	769
BsrI	ACTGG	3 cut(s)	28, 98, 367
BssECI	CCNNGG	1 cut(s)	798
BssMI	GATC	8 cut(s)	9, 148, 169, 226, 381, 427, 525, 734
Bst6I	CTCTTC	1 cut(s)	536
BstDEI	CTNAG	2 cut(s)	264, 755
BstDSI	CCRYGG	1 cut(s)	798
BstF5I	GGATG	2 cut(s)	10, 224
BstFNI	CGCG	1 cut(s)	512
BstKTI	GATC	8 cut(s)	12, 151, 172, 229, 384, 430, 528, 737
BstMAI	GTCTC	3 cut(s)	65, 751, 818
BstMBI	GATC	8 cut(s)	9, 148, 169, 226, 381, 427, 525, 734
BstMWI	GCNNNNNNNGC	3 cut(s)	438, 718, 780
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	290, 419
BstV2I	GAAGAC	2 cut(s)	212, 234
Bsu15I	ATCGAT	2 cut(s)	467, 524
BsuRI	GGCC	2 cut(s)	560, 643
BsuTUI	ATCGAT	2 cut(s)	467, 524
BtgI	CCRYGG	1 cut(s)	798
BtsCI	GGATG	2 cut(s)	10, 224
CciI	TCATGA	1 cut(s)	580
ClaI	ATCGAT	2 cut(s)	467, 524
Csp6I	GTAC	4 cut(s)	80, 101, 370, 506
CviAII	CATG	3 cut(s)	235, 581, 714
CviQI	GTAC	4 cut(s)	80, 101, 370, 506
DdeI	CTNAG	2 cut(s)	264, 755
DpnI	GATC	8 cut(s)	11, 150, 171, 228, 383, 429, 527, 736
DpnII	GATC	8 cut(s)	9, 148, 169, 226, 381, 427, 525, 734
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco32I	GATATC	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	141, 560
EcoRV	GATATC	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	751
FaeI	CATG	3 cut(s)	238, 584, 717
FaiI	YATR	8 cut(s)	214, 236, 458, 582, 699, 715, 732, 789
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	234, 580, 713
FauI	CCCGC	2 cut(s)	181, 517
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	4 cut(s)	279, 433, 561, 838
FokI	GGATG	2 cut(s)	17, 231
Fsp4HI	GCNGC	4 cut(s)	279, 433, 561, 838
FspBI	CTAG	1 cut(s)	841
GluI	GCNGC	4 cut(s)	279, 433, 561, 838
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	560, 643
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	3 cut(s)	238, 584, 717
HincII	GTYRAC	2 cut(s)	249, 349
HindII	GTYRAC	2 cut(s)	249, 349
HinfI	GANTC	6 cut(s)	86, 256, 362, 464, 518, 763
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	2 cut(s)	409, 758
Hpy166II	GTNNAC	3 cut(s)	249, 349, 684
Hpy188I	TCNGA	4 cut(s)	91, 341, 361, 676
Hpy188III	TCNNGA	5 cut(s)	44, 314, 529, 581, 812
Hpy8I	GTNNAC	3 cut(s)	249, 349, 684
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	4 cut(s)	143, 154, 388, 578
HpyCH4V	TGCA	3 cut(s)	278, 638, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	438, 718, 780
HpyF3I	CTNAG	2 cut(s)	264, 755
Hsp92II	CATG	3 cut(s)	238, 584, 717
Kzo9I	GATC	8 cut(s)	9, 148, 169, 226, 381, 427, 525, 734
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	29, 41, 96, 111, 300, 312, 380, 675
Lsp1109I	GCAGC	2 cut(s)	290, 419
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	1 cut(s)	841
MaeIII	GTNAC	2 cut(s)	65, 764
MalI	GATC	8 cut(s)	11, 150, 171, 228, 383, 429, 527, 736
MboI	GATC	8 cut(s)	9, 148, 169, 226, 381, 427, 525, 734
MboII	GAAGA	6 cut(s)	147, 217, 221, 234, 553, 827
MluCI	AATT	2 cut(s)	35, 333
MlyI	GAGTC	3 cut(s)	80, 527, 772
MnlI	CCTC	6 cut(s)	103, 436, 477, 537, 565, 568
MseI	TTAA	2 cut(s)	500, 833
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	721
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	438, 718, 780
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	8 cut(s)	9, 148, 169, 226, 381, 427, 525, 734
NlaIII	CATG	3 cut(s)	238, 584, 717
NmuCI	GTSAC	2 cut(s)	65, 764
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	1 cut(s)	580
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	3 cut(s)	256, 362, 464
PflFI	GACNNNGTC	1 cut(s)	762
PkrI	GCNGC	4 cut(s)	280, 434, 562, 839
PleI	GAGTC	3 cut(s)	80, 526, 771
PpsI	GAGTC	3 cut(s)	80, 526, 771
PsrI	GAACNNNNNNTAC	2 cut(s)	655, 687
PstI	CTGCAG	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	762
RsaI	GTAC	4 cut(s)	81, 102, 371, 507
RsaNI	GTAC	4 cut(s)	80, 101, 370, 506
SalI	GTCGAC	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	500, 833
SatI	GCNGC	4 cut(s)	279, 433, 561, 838
Sau3AI	GATC	8 cut(s)	9, 148, 169, 226, 381, 427, 525, 734
SchI	GAGTC	3 cut(s)	80, 527, 772
ScrFI	CCNGG	1 cut(s)	300
SfaNI	GCATC	1 cut(s)	783
SfcI	CTRYAG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	35, 333
SsiI	CCGC	5 cut(s)	174, 352, 510, 561, 701
SspMI	CTAG	1 cut(s)	841
StyD4I	CCNGG	1 cut(s)	298
TaqI	TCGA	5 cut(s)	147, 248, 269, 467, 524
TasI	AATT	2 cut(s)	35, 333
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	3 cut(s)	256, 362, 464
Tru1I	TTAA	2 cut(s)	500, 833
Tru9I	TTAA	2 cut(s)	500, 833
TseFI	GTSAC	2 cut(s)	65, 764
TseI	GCWGC	3 cut(s)	278, 432, 837
Tsp45I	GTSAC	2 cut(s)	65, 764
TspDTI	ATGAA	2 cut(s)	597, 719
TspGWI	ACGGA	1 cut(s)	775
Tth111I	GACNNNGTC	1 cut(s)	762
XceI	RCATGY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.