Rroxscaffold_2G00082820

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017353
Physical Location & Seq
Forward (+)
5563808 .. 5564659
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082820.1

Sequence Viewer

Length: 852 bp
ATGGATGAGATCATTTGCGCAAAAAACCAGTTCCAATTCTATCTGAAAGTTAGCTACCTTCAATGTGACGAGACAGAAGTACGTGACTGCGAAGCTCCAGTACCAATTGAGGTTGTGTTCAAGTCCCGTGTCCTTCACTACGCCTTCGATCATTCTTCAGCTACTTTTGATCCGGCTAACGACTTTGTTATTTGCGATTACAAGAAAACAATATGTGGATGTTGTGATCTTCGCATGTTGTCTTCGTCGACAGAGATTCTTTCTAAGTCGATGTCTGCAGCAAACCCTAACATCAAACCGGGAAGTGATTTTCACGATGAGATTGTGAATAAAATTGTCGGAGTTGTCAACCGCTACTCTGACTCCCATTACATTGATTGGATCAAGCTATTGAAGGTGAAAGTTGAAATAACTGAACACGTATTGGATCGCTGCGAGTGCGAGGAGTGTAGAGCTATAAGGGAATCGATTTTGATGGCAGAGAGGGAAGCAGCAAAGTTAATAGTACCGGCGAGTGAGTCATCGATCAAGAAGCTACTGAAGAGGGTTAGGGTAGTGACCGCAGACTCGGAGGAGGGTCATGAAGGTCGTCAAAGAAAAAGAAGAAGGAGAAGTCGTGGCAGTAATAGTGGTAACAATGTAGTTGCAAGACCAAGTGACAGCGATTGCTGTATTGTTTGTTCCGATGAGTTTACTGCTGGAAAGTATGCGGTTCAAATGCCATGTTTGCATTCGTTTCATAGATCGTGCATTGAGAAATGGCTGAGACGGAGTCACTATTGCCCTATTTGCCGATATGAGATGCCCGTGGCTGATGTTCCAGAAGATGTAGAGACATTGTTAAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

283

Amino Acids

32.27

Weight (kDa)

6.33

Isoelectric Point (pI)

70.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 220 - 265 1.8e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 223 - 265 3.8e-12 Ring finger domain
zf-C3HC4 PF00097 224 - 264 6.6e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 224 - 264 6.7e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 224 - 262 2.2e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017353)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g48720
rosa_chinensis RchiOBHm_Chr2g0168641
rosa_laevigata RLG00000021793
rosa_multiflora Rmu_co8317429.1_g000001 Rmu_sc0002416.1_g000008
rosa_roxburghii Rroxscaffold_2G00082820
rosa_rugosa Rorug02G0534300 Rorug02G0545200
rosa_samantha Rh2AG605000 Rh2BG618000 Rh2CG586200 Rh2DG628600
rosa_wichuraiana Rw2G050150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 19
AccI GTMKAC 1 cut(s) 248
AciI CCGC 3 cut(s) 352, 561, 710
AclWI GGATC 3 cut(s) 164, 389, 435
AcuI CTGAAG 2 cut(s) 141, 560
AfaI GTAC 3 cut(s) 81, 102, 507
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 5 cut(s) 62, 121, 394, 407, 716
AluBI AGCT 7 cut(s) 54, 95, 161, 388, 455, 535, 849
AluI AGCT 7 cut(s) 54, 95, 161, 388, 455, 535, 849
Alw26I GTCTC 3 cut(s) 65, 760, 827
AlwI GGATC 3 cut(s) 164, 389, 435
ApeKI GCWGC 4 cut(s) 278, 432, 491, 846
AspLEI GCGC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 409
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 3 cut(s) 290, 419, 503
BccI CCATC 1 cut(s) 469
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 3 cut(s) 65, 760, 827
BfaI CTAG 1 cut(s) 850
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 4 cut(s) 279, 433, 492, 847
BlsI GCNGC 4 cut(s) 280, 434, 493, 848
Bme1390I CCNGG 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 792
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 300
Bsa29I ATCGAT 2 cut(s) 467, 524
BsaAI YACGTR 2 cut(s) 83, 421
BsaJI CCNNGG 1 cut(s) 807
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 601, 631
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 2 cut(s) 28, 98
BseCI ATCGAT 2 cut(s) 467, 524
BseDI CCNNGG 1 cut(s) 807
BseGI GGATG 2 cut(s) 10, 224
BseMII CTCAG 1 cut(s) 755
BseNI ACTGG 2 cut(s) 28, 98
BseRI GAGGAG 2 cut(s) 458, 587
BseXI GCAGC 3 cut(s) 290, 419, 503
BshVI ATCGAT 2 cut(s) 467, 524
BsiSI CCGG 3 cut(s) 173, 299, 509
BslFI GGGAC 1 cut(s) 109
BsmAI GTCTC 3 cut(s) 65, 760, 827
BsmBI CGTCTC 1 cut(s) 760
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 730
Bsp143I GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
BspACI CCGC 3 cut(s) 352, 561, 710
BspCNI CTCAG 1 cut(s) 756
BspDI ATCGAT 2 cut(s) 467, 524
BspHI TCATGA 1 cut(s) 580
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 3 cut(s) 164, 389, 435
BsrFI RCCGGY 1 cut(s) 508
BsrI ACTGG 2 cut(s) 28, 98
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 807
BssMI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
Bst6I CTCTTC 1 cut(s) 536
BstBAI YACGTR 2 cut(s) 83, 421
BstDEI CTNAG 2 cut(s) 264, 764
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 2 cut(s) 10, 224
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 8 cut(s) 12, 151, 172, 229, 384, 430, 528, 746
BstMAI GTCTC 3 cut(s) 65, 760, 827
BstMBI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
BstMWI GCNNNNNNNGC 3 cut(s) 438, 727, 789
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 3 cut(s) 290, 419, 503
BstV2I GAAGAC 1 cut(s) 234
Bsu15I ATCGAT 2 cut(s) 467, 524
BsuTUI ATCGAT 2 cut(s) 467, 524
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 2 cut(s) 10, 224
CciI TCATGA 1 cut(s) 580
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 508
ClaI ATCGAT 2 cut(s) 467, 524
Csp6I GTAC 3 cut(s) 80, 101, 506
CviAII CATG 3 cut(s) 235, 581, 723
CviQI GTAC 3 cut(s) 80, 101, 506
DdeI CTNAG 2 cut(s) 264, 764
DpnI GATC 8 cut(s) 11, 150, 171, 228, 383, 429, 527, 745
DpnII GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 141, 560
Esp3I CGTCTC 1 cut(s) 760
FaeI CATG 3 cut(s) 238, 584, 726
FaiI YATR 8 cut(s) 214, 236, 458, 582, 708, 724, 741, 798
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 234, 580, 722
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 279, 433, 492, 847
FokI GGATG 2 cut(s) 17, 231
Fsp4HI GCNGC 4 cut(s) 279, 433, 492, 847
FspBI CTAG 1 cut(s) 850
FspI TGCGCA 1 cut(s) 19
GlaI GCGC 1 cut(s) 19
GluI GCNGC 4 cut(s) 279, 433, 492, 847
GsuI CTGGAG 1 cut(s) 81
HapII CCGG 3 cut(s) 173, 299, 509
HhaI GCGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 238, 584, 726
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 2 cut(s) 249, 349
HindII GTYRAC 2 cut(s) 249, 349
HinfI GANTC 6 cut(s) 256, 362, 464, 518, 566, 772
HpaII CCGG 3 cut(s) 173, 299, 509
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 3 cut(s) 249, 349, 693
Hpy188I TCNGA 5 cut(s) 45, 341, 361, 571, 685
Hpy188III TCNNGA 4 cut(s) 314, 529, 581, 821
Hpy8I GTNNAC 3 cut(s) 249, 349, 693
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 6 cut(s) 68, 143, 154, 388, 578, 600
HpyCH4IV ACGT 2 cut(s) 82, 420
HpyCH4V TGCA 4 cut(s) 278, 647, 730, 750
HpyF10VI GCNNNNNNNGC 3 cut(s) 438, 727, 789
HpyF3I CTNAG 2 cut(s) 264, 764
HpySE526I ACGT 2 cut(s) 82, 420
Hsp92II CATG 3 cut(s) 238, 584, 726
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 41, 111, 186, 312, 522, 684, 834
Lsp1109I GCAGC 3 cut(s) 290, 419, 503
LweI GCATC 1 cut(s) 792
MaeI CTAG 1 cut(s) 850
MaeII ACGT 2 cut(s) 82, 420
MaeIII GTNAC 6 cut(s) 65, 83, 556, 632, 656, 773
MalI GATC 8 cut(s) 11, 150, 171, 228, 383, 429, 527, 745
MboI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
MboII GAAGA 6 cut(s) 147, 221, 234, 553, 615, 836
MfeI CAATTG 1 cut(s) 105
MluCI AATT 3 cut(s) 35, 105, 333
MlyI GAGTC 4 cut(s) 356, 527, 560, 781
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 6 cut(s) 103, 436, 477, 537, 565, 568
MseI TTAA 2 cut(s) 500, 842
MspI CCGG 3 cut(s) 173, 299, 509
MspR9I CCNGG 1 cut(s) 300
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 730
MwoI GCNNNNNNNGC 3 cut(s) 438, 727, 789
NciI CCSGG 1 cut(s) 300
NdeII GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
NlaIII CATG 3 cut(s) 238, 584, 726
NmuCI GTSAC 5 cut(s) 65, 83, 556, 656, 773
NsbI TGCGCA 1 cut(s) 19
NspI RCATGY 1 cut(s) 238
PagI TCATGA 1 cut(s) 580
PctI GAATGC 1 cut(s) 730
PfeI GAWTC 2 cut(s) 256, 464
PflFI GACNNNGTC 1 cut(s) 771
PkrI GCNGC 4 cut(s) 280, 434, 493, 848
PleI GAGTC 4 cut(s) 356, 526, 560, 780
PpsI GAGTC 4 cut(s) 356, 526, 560, 780
Ppu21I YACGTR 2 cut(s) 83, 421
PsrI GAACNNNNNNTAC 2 cut(s) 664, 696
PstI CTGCAG 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 771
RsaI GTAC 3 cut(s) 81, 102, 507
RsaNI GTAC 3 cut(s) 80, 101, 506
SalI GTCGAC 1 cut(s) 247
SaqAI TTAA 2 cut(s) 500, 842
SatI GCNGC 4 cut(s) 279, 433, 492, 847
Sau3AI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
SchI GAGTC 4 cut(s) 356, 527, 560, 781
ScrFI CCNGG 1 cut(s) 300
SfaNI GCATC 1 cut(s) 792
SfcI CTRYAG 1 cut(s) 276
Sse9I AATT 3 cut(s) 35, 105, 333
SsiI CCGC 3 cut(s) 352, 561, 710
SspMI CTAG 1 cut(s) 850
StyD4I CCNGG 1 cut(s) 298
TaiI ACGT 2 cut(s) 85, 423
TaqI TCGA 5 cut(s) 147, 248, 269, 467, 524
TasI AATT 3 cut(s) 35, 105, 333
TfiI GAWTC 2 cut(s) 256, 464
Tru1I TTAA 2 cut(s) 500, 842
Tru9I TTAA 2 cut(s) 500, 842
TseFI GTSAC 5 cut(s) 65, 83, 556, 656, 773
TseI GCWGC 4 cut(s) 278, 432, 491, 846
Tsp45I GTSAC 5 cut(s) 65, 83, 556, 656, 773
TspDTI ATGAA 2 cut(s) 597, 728
TspGWI ACGGA 1 cut(s) 784
Tth111I GACNNNGTC 1 cut(s) 771
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.