RLG00000021793

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017353
Physical Location & Seq
Reverse (-)
78368436 .. 78369287
852 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021793

Sequence Viewer

Length: 852 bp
ATGGATGAGATCATTTGGGCAAAAAACCAGTTCCAATTCTATCTGAAAGTTAGCTACCTTGACTGTGACGAGACAGAAGTACCTGAATGCGAAGCTTCAGTTCCAATTGAGGTTGTGTTCAAGTCCCGTGTTCTTCACTACGCCTTCGATCATTCTTCAGCTACTTTTGATCCCCCTAACGACTTTGTTATTTGCGATTACAAGAAGACAATATGTGGATGTTGTGATCTTCGCATGTTGTCTTCGTCGACAGAGATTCTTTCTAAGTCGATGTCTGCAGCAAACCCTAACATCAAGCCGGGAAGTGATTTTCACGATGAGATTGTGAATAAAATTGTCAAAGTTGTCAACCGCTACTCTGACTCCCATTACATTGATTGGATCAAGCTATTGAAGGTGAAAGTTGAAATAACTGAACACGTATTGGATCGCTGCGAGTGCGAGGAGTGTAGAGCTATAAGGGAATCGATTTTGATGGCAGAGAGGGAAGCAGAAAAGTTAATAGTACCGGCGAGTGAGTCATCGATCAAGAAGCTACTGAAGAGGGTTAGGGTAGTGGCCCCAGACTCGGAGGAGGGTCATGAAGGTCGTCAAAGAAAAAGAAGAAGGAGAAGTCGTGGCAGTAAGAGTGGTAACAATGTAGTTGCAAGGCCAAGTGATAGCGATTGCTGTATTGTTTGTTCCGATGAGTTTACTGCCGGAAAGTATGCGGTTCAAATGCCATGTTTGCATTCGTTTCATAGATCGTGCCTTGAGAAATGGCTGAGACGGAGTCACTATTGCCCTATTTGCCGATATGAGATGCCCGTGGCTGATGTTCAAGAAGATGTAGAGACATTGTTAAGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

284

Amino Acids

32.48

Weight (kDa)

6.17

Isoelectric Point (pI)

69.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 220 - 265 7e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 223 - 265 4e-12 Ring finger domain
zf-C3HC4 PF00097 224 - 264 1.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 224 - 264 1.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 224 - 262 3.3e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017353)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g48720
rosa_chinensis RchiOBHm_Chr2g0168641
rosa_laevigata RLG00000021793
rosa_multiflora Rmu_co8317429.1_g000001 Rmu_sc0002416.1_g000008
rosa_roxburghii Rroxscaffold_2G00082820
rosa_rugosa Rorug02G0534300 Rorug02G0545200
rosa_samantha Rh2AG605000 Rh2BG618000 Rh2CG586200 Rh2DG628600
rosa_wichuraiana Rw2G050150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 248
AciI CCGC 2 cut(s) 352, 710
AclWI GGATC 3 cut(s) 164, 389, 435
AcuI CTGAAG 3 cut(s) 81, 141, 560
AfaI GTAC 2 cut(s) 81, 507
AfiI CCNNNNNNNGG 1 cut(s) 568
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 5 cut(s) 121, 394, 407, 716, 821
AluBI AGCT 7 cut(s) 54, 95, 161, 388, 455, 535, 849
AluI AGCT 7 cut(s) 54, 95, 161, 388, 455, 535, 849
Alw26I GTCTC 3 cut(s) 65, 760, 827
AlwI GGATC 3 cut(s) 164, 389, 435
AoxI GGCC 2 cut(s) 558, 650
ApeKI GCWGC 3 cut(s) 278, 432, 846
AspS9I GGNCC 1 cut(s) 559
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 1 cut(s) 409
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BbsI GAAGAC 2 cut(s) 212, 234
BbvI GCAGC 2 cut(s) 290, 419
BccI CCATC 1 cut(s) 469
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 3 cut(s) 65, 760, 827
BfaI CTAG 1 cut(s) 850
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 3 cut(s) 279, 433, 847
BlsI GCNGC 3 cut(s) 280, 434, 848
Bme1390I CCNGG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 559
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 792
BpiI GAAGAC 2 cut(s) 212, 234
BpuEI CTTGAG 1 cut(s) 773
BpuMI CCSGG 1 cut(s) 300
Bsa29I ATCGAT 2 cut(s) 467, 524
BsaAI YACGTR 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 807
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 601, 631
Bsc4I CCNNNNNNNGG 1 cut(s) 568
Bse118I RCCGGY 1 cut(s) 508
Bse1I ACTGG 1 cut(s) 28
BseCI ATCGAT 2 cut(s) 467, 524
BseDI CCNNGG 1 cut(s) 807
BseGI GGATG 2 cut(s) 10, 224
BseLI CCNNNNNNNGG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 755
BseNI ACTGG 1 cut(s) 28
BseRI GAGGAG 2 cut(s) 458, 587
BseXI GCAGC 2 cut(s) 290, 419
BshFI GGCC 2 cut(s) 560, 652
BshVI ATCGAT 2 cut(s) 467, 524
BsiSI CCGG 3 cut(s) 299, 509, 699
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 568
BsmAI GTCTC 3 cut(s) 65, 760, 827
BsmBI CGTCTC 1 cut(s) 760
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 2 cut(s) 92, 730
BsnI GGCC 2 cut(s) 560, 652
Bsp143I GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
BspACI CCGC 2 cut(s) 352, 710
BspANI GGCC 2 cut(s) 560, 652
BspCNI CTCAG 1 cut(s) 756
BspDI ATCGAT 2 cut(s) 467, 524
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 1 cut(s) 561
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 3 cut(s) 164, 389, 435
BsrFI RCCGGY 1 cut(s) 508
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 1 cut(s) 807
BssMI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 264, 764
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 2 cut(s) 10, 224
BstKTI GATC 8 cut(s) 12, 151, 172, 229, 384, 430, 528, 746
BstMAI GTCTC 3 cut(s) 65, 760, 827
BstMBI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
BstMWI GCNNNNNNNGC 3 cut(s) 438, 727, 789
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 290, 419
BstV2I GAAGAC 2 cut(s) 212, 234
Bsu15I ATCGAT 2 cut(s) 467, 524
BsuRI GGCC 2 cut(s) 560, 652
BsuTUI ATCGAT 2 cut(s) 467, 524
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 2 cut(s) 10, 224
CciI TCATGA 1 cut(s) 580
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 1 cut(s) 559
ClaI ATCGAT 2 cut(s) 467, 524
Csp6I GTAC 2 cut(s) 80, 506
CviAII CATG 3 cut(s) 235, 581, 723
CviQI GTAC 2 cut(s) 80, 506
DdeI CTNAG 2 cut(s) 264, 764
DpnI GATC 8 cut(s) 11, 150, 171, 228, 383, 429, 527, 745
DpnII GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
Eco57I CTGAAG 3 cut(s) 81, 141, 560
Esp3I CGTCTC 1 cut(s) 760
FaeI CATG 3 cut(s) 238, 584, 726
FaiI YATR 8 cut(s) 214, 236, 458, 582, 708, 724, 741, 798
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 234, 580, 722
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 279, 433, 847
FokI GGATG 2 cut(s) 17, 231
Fsp4HI GCNGC 3 cut(s) 279, 433, 847
FspBI CTAG 1 cut(s) 850
GluI GCNGC 3 cut(s) 279, 433, 847
HaeIII GGCC 2 cut(s) 560, 652
HapII CCGG 3 cut(s) 299, 509, 699
Hin1II CATG 3 cut(s) 238, 584, 726
HincII GTYRAC 2 cut(s) 249, 349
HindII GTYRAC 2 cut(s) 249, 349
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 6 cut(s) 256, 362, 464, 518, 566, 772
HpaII CCGG 3 cut(s) 299, 509, 699
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 3 cut(s) 249, 349, 693
Hpy188I TCNGA 4 cut(s) 45, 361, 571, 685
Hpy188III TCNNGA 4 cut(s) 314, 529, 581, 821
Hpy8I GTNNAC 3 cut(s) 249, 349, 693
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 154, 388, 578, 600
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 3 cut(s) 278, 647, 730
HpyF10VI GCNNNNNNNGC 3 cut(s) 438, 727, 789
HpyF3I CTNAG 2 cut(s) 264, 764
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 3 cut(s) 238, 584, 726
Kzo9I GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
LpnPI CCDG 6 cut(s) 41, 96, 312, 522, 576, 712
Lsp1109I GCAGC 2 cut(s) 290, 419
LweI GCATC 1 cut(s) 792
MaeI CTAG 1 cut(s) 850
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 3 cut(s) 65, 632, 773
MalI GATC 8 cut(s) 11, 150, 171, 228, 383, 429, 527, 745
MboI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
MboII GAAGA 8 cut(s) 125, 147, 217, 221, 234, 553, 615, 836
MfeI CAATTG 1 cut(s) 105
MluCI AATT 3 cut(s) 35, 105, 333
MlyI GAGTC 4 cut(s) 356, 527, 560, 781
MnlI CCTC 6 cut(s) 103, 436, 477, 537, 565, 568
MseI TTAA 2 cut(s) 500, 842
MspI CCGG 3 cut(s) 299, 509, 699
MspR9I CCNGG 1 cut(s) 300
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 2 cut(s) 92, 730
MwoI GCNNNNNNNGC 3 cut(s) 438, 727, 789
NciI CCSGG 1 cut(s) 300
NdeII GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
NlaIII CATG 3 cut(s) 238, 584, 726
NlaIV GGNNCC 1 cut(s) 561
NmuCI GTSAC 2 cut(s) 65, 773
NspI RCATGY 1 cut(s) 238
PagI TCATGA 1 cut(s) 580
PctI GAATGC 2 cut(s) 92, 730
PfeI GAWTC 2 cut(s) 256, 464
PflFI GACNNNGTC 1 cut(s) 771
PkrI GCNGC 3 cut(s) 280, 434, 848
PleI GAGTC 4 cut(s) 356, 526, 560, 780
PpsI GAGTC 4 cut(s) 356, 526, 560, 780
Ppu21I YACGTR 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 1 cut(s) 559
PsrI GAACNNNNNNTAC 2 cut(s) 664, 696
PstI CTGCAG 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 771
RsaI GTAC 2 cut(s) 81, 507
RsaNI GTAC 2 cut(s) 80, 506
SalI GTCGAC 1 cut(s) 247
SaqAI TTAA 2 cut(s) 500, 842
SatI GCNGC 3 cut(s) 279, 433, 847
Sau3AI GATC 8 cut(s) 9, 148, 169, 226, 381, 427, 525, 743
Sau96I GGNCC 1 cut(s) 559
SchI GAGTC 4 cut(s) 356, 527, 560, 781
ScrFI CCNGG 1 cut(s) 300
SfaNI GCATC 1 cut(s) 792
SfcI CTRYAG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 3 cut(s) 35, 105, 333
SsiI CCGC 2 cut(s) 352, 710
SspMI CTAG 1 cut(s) 850
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 423
TaqI TCGA 5 cut(s) 147, 248, 269, 467, 524
TasI AATT 3 cut(s) 35, 105, 333
TfiI GAWTC 2 cut(s) 256, 464
Tru1I TTAA 2 cut(s) 500, 842
Tru9I TTAA 2 cut(s) 500, 842
TseFI GTSAC 2 cut(s) 65, 773
TseI GCWGC 3 cut(s) 278, 432, 846
Tsp45I GTSAC 2 cut(s) 65, 773
TspDTI ATGAA 2 cut(s) 597, 728
TspGWI ACGGA 1 cut(s) 784
Tth111I GACNNNGTC 1 cut(s) 771
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.