FvH4_6g49680

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017152
Physical Location & Seq
Forward (+)
37168155 .. 37169344
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49680.t1

Sequence Viewer

Length: 300 bp
ATGGAGAATTCAGGAAGAAGTAAGGTTTTAAGGGCTCTGTTTGGACTTCTTCTGCTTCTTGGTGTCTTCTGGTTCTTCTCTGCAGCAATTCTAGTGAACCACGCTACGGGACCCACTGTTACAGTTTCATCCACCAGAGTCTTCAAGCATTGGAAGCTGACTGGAAGGGAGAAGAAGCATGCTGTTGTTTGGGATTCTTCTACCTTCATTTTCGTGAGCAAGAGACGAGTACCGAATGGACCTGATCCCATTCATAACAGGAGAGCAGTGAAGAGTAGACAACCAGCCGGTCGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.11

Weight (kDa)

12.0

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28455
fragaria_vesca FvH4_6g49680
malus_domestica MD09G1042500.v1.1 MD17G1044000.v1.1
prunus_persica Prupe.3G275200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0169701
rosa_multiflora Rmu_ssc0000220.1_g000001
rosa_roxburghii Rroxscaffold_2G00081870
rosa_rugosa Rorug02G0542300
rosa_samantha Rh2AG614600 Rh2CG596300 Rh2DG637700
rosa_wichuraiana Rw2G050950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 277
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 2 cut(s) 157, 296
AluI AGCT 2 cut(s) 157, 296
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 110, 239
AvaII GGWCC 2 cut(s) 110, 239
BanII GRGCYC 1 cut(s) 37
BbsI GAAGAC 2 cut(s) 58, 133
BbvI GCAGC 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme18I GGWCC 2 cut(s) 110, 239
BmgT120I GGNCC 2 cut(s) 110, 239
BmiI GGNNCC 2 cut(s) 111, 112
BpiI GAAGAC 2 cut(s) 58, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 244
BspLI GGNNCC 2 cut(s) 111, 112
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 287
BssMI GATC 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 118, 124
Bst6I CTCTTC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 128
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 1 cut(s) 244
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 154, 293
BstNSI RCATGY 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 95
BstV2I GAAGAC 2 cut(s) 58, 133
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 2 cut(s) 114, 273
Cac8I GCNNGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 110, 239
Csp6I GTAC 1 cut(s) 230
CviAII CATG 1 cut(s) 179
CviJI RGCY 4 cut(s) 35, 157, 287, 296
CviKI_1 RGCY 4 cut(s) 35, 157, 287, 296
CviQI GTAC 1 cut(s) 230
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 110, 239
EcoO109I RGGNCCY 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 1 cut(s) 182
FaiI YATR 2 cut(s) 180, 255
FaqI GGGAC 1 cut(s) 123
FatI CATG 1 cut(s) 178
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 92
GluI GCNGC 1 cut(s) 84
HapII CCGG 1 cut(s) 288
Hin1II CATG 1 cut(s) 182
HinfI GANTC 2 cut(s) 138, 194
HpaII CCGG 1 cut(s) 288
Hpy166II GTNNAC 2 cut(s) 97, 278
Hpy188III TCNNGA 2 cut(s) 12, 214
Hpy8I GTNNAC 2 cut(s) 97, 278
HpyAV CCTTC 2 cut(s) 159, 214
HpyCH4III ACNGT 2 cut(s) 118, 124
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 293
Hsp92II CATG 1 cut(s) 182
KflI GGGWCCC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 5 cut(s) 55, 147, 148, 244, 255
Lsp1109I GCAGC 1 cut(s) 95
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 8 cut(s) 27, 41, 58, 67, 133, 184, 189, 283
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 7, 87
MlyI GAGTC 1 cut(s) 147
MseI TTAA 2 cut(s) 29, 298
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 154, 293
NdeII GATC 1 cut(s) 244
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 2 cut(s) 111, 112
NspI RCATGY 1 cut(s) 182
PaeI GCATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 111, 112
PspPI GGNCC 2 cut(s) 110, 239
PspPPI RGGWCCY 1 cut(s) 110
PstI CTGCAG 1 cut(s) 85
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 212
SaqAI TTAA 2 cut(s) 29, 298
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 2 cut(s) 110, 239
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 37
SetI ASST 5 cut(s) 27, 159, 206, 244, 298
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 2 cut(s) 110, 239
SmiMI CAYNNNNRTG 1 cut(s) 212
SphI GCATGC 1 cut(s) 182
Sse9I AATT 2 cut(s) 7, 87
SspMI CTAG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 118, 124
TaqI TCGA 1 cut(s) 292
TasI AATT 2 cut(s) 7, 87
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 29, 298
Tru9I TTAA 2 cut(s) 29, 298
TscAI CASTG 2 cut(s) 121, 273
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 117, 196, 242
TspRI CASTG 2 cut(s) 121, 273
VpaK11BI GGWCC 2 cut(s) 110, 239
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 277
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.