MD09G1042500.v1.1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0017152
Physical Location & Seq
Reverse (-)
2752480 .. 2754541
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1042500.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGCAAGTGGCAGGAAGGTTTTAAGAGCTATGTTTGGAGCTCTTCTGCTTCTGGGTGTCTTTTGGTTTTTCCTTGCTGGAATTCTTGTAAACCGCAGTGCCGAAAAACCAGCTGTTACAGTTTCACCCACCGAAATCTTCAAGCATTGGAAGTTGATTGGAAGAGAGAAGCATGCTGTTGTCTGGGATTCCACCTTTATTTACGTGAGCAAAAGAAGAGTGCCAAATGGACCCGATCCCATTCATAACAGGAGAGCAGTGAAGACTAGACAACCACCTATGCGAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.94

Weight (kDa)

11.67

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28455
fragaria_vesca FvH4_6g49680
malus_domestica MD09G1042500.v1.1 MD17G1044000.v1.1
prunus_persica Prupe.3G275200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0169701
rosa_multiflora Rmu_ssc0000220.1_g000001
rosa_roxburghii Rroxscaffold_2G00081870
rosa_rugosa Rorug02G0542300
rosa_samantha Rh2AG614600 Rh2CG596300 Rh2DG637700
rosa_wichuraiana Rw2G050950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 81
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 3 cut(s) 29, 41, 113
AluI AGCT 3 cut(s) 29, 41, 113
Alw21I GWGCWC 1 cut(s) 43
AlwI GGATC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 43
BfaI CTAG 2 cut(s) 267, 289
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 48
BssMI GATC 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 3 cut(s) 48, 157, 211
BstBAI YACGTR 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 174, 285
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 269
BtsI GCAGTG 2 cut(s) 103, 264
BtsIMutI CAGTG 2 cut(s) 103, 264
Cac8I GCNNGC 2 cut(s) 174, 285
Cfr13I GGNCC 1 cut(s) 230
CviAII CATG 1 cut(s) 173
CviJI RGCY 4 cut(s) 29, 41, 113, 287
CviKI_1 RGCY 4 cut(s) 29, 41, 113, 287
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 48, 157, 211
EarI CTCTTC 3 cut(s) 48, 157, 211
Ecl136II GAGCTC 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 41
EcoICRI GAGCTC 1 cut(s) 41
EcoRI GAATTC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 1 cut(s) 176
FaiI YATR 4 cut(s) 32, 174, 246, 281
FatI CATG 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 43
FspBI CTAG 2 cut(s) 267, 289
Hin1II CATG 1 cut(s) 176
HinfI GANTC 1 cut(s) 188
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 1 cut(s) 176
Kzo9I GATC 1 cut(s) 235
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 5 cut(s) 38, 63, 123, 169, 235
MaeI CTAG 2 cut(s) 267, 289
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 5 cut(s) 35, 130, 174, 228, 274
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 1 cut(s) 81
MseI TTAA 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 113
NdeII GATC 1 cut(s) 235
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 232
NspI RCATGY 1 cut(s) 176
PaeI GCATGC 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 188
Ppu21I YACGTR 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 43
SetI ASST 7 cut(s) 21, 31, 43, 115, 197, 207, 280
SinI GGWCC 1 cut(s) 230
SphI GCATGC 1 cut(s) 176
Sse9I AATT 1 cut(s) 81
SsiI CCGC 1 cut(s) 94
SspMI CTAG 2 cut(s) 267, 289
SstI GAGCTC 1 cut(s) 43
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 207
TasI AATT 1 cut(s) 81
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 103, 264
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 2 cut(s) 103, 264
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 81
XceI RCATGY 1 cut(s) 176
XspI CTAG 2 cut(s) 267, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.