Rorug02G0542300

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017152
Physical Location & Seq
Forward (+)
67179014 .. 67179818
805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0542300.1

Sequence Viewer

Length: 276 bp
ATGAACTATCTCAACCGCGTGTGGGTGGCGGCCAGCGTTGCGACGGTGCAGGGCCCGTCGGACCAGGTCCCCAGAAGGAACTCCGGCCTTAACTCGTTTCAGCTCAGCCGGAGGCGATCCGGCGGGGACGCGTCGTCGGATCTCCCGCCTTCGCCTGGCGGAGCCGGGTCGGGTTTTTCTGGAGGAGGAGGAGGTGGAAAGTGCGAGGAGAAACGACAGCAGTCCGATGAGTCTCTGCAGCGAGTCATGTACTTGAACTGCTGGGGTCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.56

Weight (kDa)

9.3

Isoelectric Point (pI)

85.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 9 - 90 4.8e-16 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28455
fragaria_vesca FvH4_6g49680
malus_domestica MD09G1042500.v1.1 MD17G1044000.v1.1
prunus_persica Prupe.3G275200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0169701
rosa_multiflora Rmu_ssc0000220.1_g000001
rosa_roxburghii Rroxscaffold_2G00081870
rosa_rugosa Rorug02G0542300
rosa_samantha Rh2AG614600 Rh2CG596300 Rh2DG637700
rosa_wichuraiana Rw2G050950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 18, 131
AciI CCGC 5 cut(s) 16, 29, 123, 146, 159
AclWI GGATC 2 cut(s) 111, 147
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 22, 155
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 1 cut(s) 256
AhdI GACNNNNNGTC 1 cut(s) 133
AjnI CCWGG 2 cut(s) 63, 154
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 2 cut(s) 111, 147
AoxI GGCC 3 cut(s) 30, 52, 85
ApaI GGGCCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 238
AspS9I GGNCC 4 cut(s) 52, 53, 61, 67
AsuC2I CCSGG 1 cut(s) 166
AvaII GGWCC 2 cut(s) 61, 67
BaeGI GKGCMC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 250
BciT130I CCWGG 2 cut(s) 65, 156
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 236
BisI GCNGC 2 cut(s) 30, 239
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 2 cut(s) 31, 240
Bme1390I CCNGG 3 cut(s) 65, 156, 166
Bme18I GGWCC 2 cut(s) 61, 67
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgT120I GGNCC 4 cut(s) 52, 53, 61, 67
BmiI GGNNCC 3 cut(s) 54, 69, 163
BmrFI CCNGG 3 cut(s) 65, 156, 166
BoxI GACNNNNGTC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 155
BseBI CCWGG 2 cut(s) 65, 156
BseLI CCNNNNNNNGG 2 cut(s) 22, 155
BseMII CTCAG 1 cut(s) 118
BseRI GAGGAG 4 cut(s) 198, 201, 204, 221
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 1 cut(s) 250
BseYI CCCAGC 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 18, 131
BshFI GGCC 3 cut(s) 32, 54, 87
BsiSI CCGG 4 cut(s) 84, 109, 120, 165
BslFI GGGAC 2 cut(s) 53, 140
BslI CCNNNNNNNGG 2 cut(s) 22, 155
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 53, 140
BsnI GGCC 3 cut(s) 32, 54, 87
Bsp120I GGGCCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 116, 139
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 5 cut(s) 16, 29, 123, 146, 159
BspANI GGCC 3 cut(s) 32, 54, 87
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 18, 131
BspLI GGNNCC 3 cut(s) 54, 69, 163
BspMAI CTGCAG 1 cut(s) 240
BspPI GGATC 2 cut(s) 111, 147
BssMI GATC 2 cut(s) 116, 139
Bst2UI CCWGG 2 cut(s) 65, 156
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 104
BstFNI CGCG 2 cut(s) 18, 131
BstKTI GATC 2 cut(s) 119, 142
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 116, 139
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 2 cut(s) 65, 156
BstPAI GACNNNNGTC 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 63, 154, 164
BstSFI CTRYAG 1 cut(s) 236
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 2 cut(s) 18, 131
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 3 cut(s) 32, 54, 87
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 4 cut(s) 52, 53, 61, 67
CseI GACGC 2 cut(s) 120, 137
CsiI ACCWGGT 1 cut(s) 63
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 247
CviJI RGCY 6 cut(s) 32, 54, 87, 103, 108, 164
CviKI_1 RGCY 6 cut(s) 32, 54, 87, 103, 108, 164
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 104
DpnI GATC 2 cut(s) 118, 141
DpnII GATC 2 cut(s) 116, 139
DriI GACNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 61, 67
EcoO109I RGGNCCY 2 cut(s) 52, 67
EcoRII CCWGG 2 cut(s) 63, 154
EcoT38I GRGCYC 1 cut(s) 56
FaeI CATG 1 cut(s) 250
FaiI YATR 1 cut(s) 248
FaqI GGGAC 2 cut(s) 53, 140
FatI CATG 1 cut(s) 246
FauI CCCGC 2 cut(s) 116, 153
Fnu4HI GCNGC 2 cut(s) 30, 239
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 30, 239
GluI GCNGC 2 cut(s) 30, 239
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 32, 54, 87
HapII CCGG 4 cut(s) 84, 109, 120, 165
HgaI GACGC 2 cut(s) 120, 137
Hin1II CATG 1 cut(s) 250
HinfI GANTC 2 cut(s) 230, 243
HpaII CCGG 4 cut(s) 84, 109, 120, 165
Hpy188I TCNGA 3 cut(s) 61, 139, 226
Hpy188III TCNNGA 1 cut(s) 180
Hpy99I CGWCG 4 cut(s) 46, 61, 136, 139
HpyAV CCTTC 2 cut(s) 69, 159
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 49, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 1 cut(s) 250
Kzo9I GATC 2 cut(s) 116, 139
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 250
MabI ACCWGGT 1 cut(s) 63
MalI GATC 2 cut(s) 118, 141
MboI GATC 2 cut(s) 116, 139
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 56
MluI ACGCGT 1 cut(s) 129
MlyI GAGTC 2 cut(s) 239, 252
MmeI TCCRAC 2 cut(s) 39, 117
MnlI CCTC 6 cut(s) 105, 176, 179, 182, 185, 199
MseI TTAA 1 cut(s) 90
MspI CCGG 4 cut(s) 84, 109, 120, 165
MspR9I CCNGG 3 cut(s) 65, 156, 166
MvaI CCWGG 2 cut(s) 65, 156
MvnI CGCG 2 cut(s) 18, 131
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 166
NdeII GATC 2 cut(s) 116, 139
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 3 cut(s) 54, 69, 163
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 31, 240
PleI GAGTC 2 cut(s) 238, 251
PpsI GAGTC 2 cut(s) 238, 251
PpuMI RGGWCCY 1 cut(s) 67
PshAI GACNNNNGTC 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 63, 154
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 2 cut(s) 63, 154
PspN4I GGNNCC 3 cut(s) 54, 69, 163
PspOMI GGGCCC 1 cut(s) 52
PspPI GGNCC 4 cut(s) 52, 53, 61, 67
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 30, 239
Sau3AI GATC 2 cut(s) 116, 139
Sau96I GGNCC 4 cut(s) 52, 53, 61, 67
SchI GAGTC 2 cut(s) 239, 252
ScrFI CCNGG 3 cut(s) 65, 156, 166
SduI GDGCHC 1 cut(s) 56
SetI ASST 3 cut(s) 69, 105, 196
SexAI ACCWGGT 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 236
SinI GGWCC 2 cut(s) 61, 67
SsiI CCGC 5 cut(s) 16, 29, 123, 146, 159
StyD4I CCNGG 3 cut(s) 63, 154, 164
TaaI ACNGT 1 cut(s) 46
TatI WGTACW 1 cut(s) 249
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 61, 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.