MD17G1044000.v1.1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0017152
Physical Location & Seq
Reverse (-)
3217476 .. 3219417
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1044000.v1.1.491

Sequence Viewer

Length: 267 bp
ATGGAGAGTCGCAGGAAGGTTTTAAGAGCTCTGTTTGGAGCTCTTCTGATGCTGGTTGTCTTCTGGTTTTTCCTTGCTGGAATACTTGTAAACCGCGGTGCCGAAAAAAAACCAACCGTTACAGTTTCATCCACTAAAATCTTCAAGCATTGGAAGTTGATTGGAAGAGAGAAGCATACTGTTGTCTGGGACTCCACCTTTATCTACGTGAGCAAAAGAAGAGTGCCAAATGGACCTGATCCCATTCATAACAGCAGTGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.15

Weight (kDa)

10.49

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28455
fragaria_vesca FvH4_6g49680
malus_domestica MD09G1042500.v1.1 MD17G1044000.v1.1
prunus_persica Prupe.3G275200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0169701
rosa_multiflora Rmu_ssc0000220.1_g000001
rosa_roxburghii Rroxscaffold_2G00081870
rosa_rugosa Rorug02G0542300
rosa_samantha Rh2AG614600 Rh2CG596300 Rh2DG637700
rosa_wichuraiana Rw2G050950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AccII CGCG 1 cut(s) 96
AciI CCGC 2 cut(s) 94, 96
AclWI GGATC 1 cut(s) 233
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 2 cut(s) 29, 41
AluI AGCT 2 cut(s) 29, 41
Alw21I GWGCWC 2 cut(s) 31, 43
AlwI GGATC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 2 cut(s) 31, 43
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 2 cut(s) 31, 43
BfaI CTAG 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 52
BsaAI YACGTR 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 128
Bsh1236I CGCG 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 31, 43
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 31, 43
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 2 cut(s) 94, 96
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 233
BspQI GCTCTTC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 238
Bst4CI ACNGT 3 cut(s) 118, 124, 181
Bst6I CTCTTC 3 cut(s) 48, 160, 214
BstBAI YACGTR 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 128
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstUI CGCG 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 233
Cfr42I CCGCGG 1 cut(s) 97
CviJI RGCY 2 cut(s) 29, 41
CviKI_1 RGCY 2 cut(s) 29, 41
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 3 cut(s) 48, 160, 214
EarI CTCTTC 3 cut(s) 48, 160, 214
Ecl136II GAGCTC 2 cut(s) 29, 41
Eco24I GRGCYC 2 cut(s) 31, 43
Eco47I GGWCC 1 cut(s) 233
Eco53kI GAGCTC 2 cut(s) 29, 41
EcoICRI GAGCTC 2 cut(s) 29, 41
EcoT38I GRGCYC 2 cut(s) 31, 43
FaiI YATR 2 cut(s) 177, 249
FaqI GGGAC 1 cut(s) 203
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 2 cut(s) 31, 43
FspBI CTAG 1 cut(s) 265
HinfI GANTC 2 cut(s) 7, 191
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 3 cut(s) 118, 124, 181
HpyCH4IV ACGT 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 207
KspI CCGCGG 1 cut(s) 97
Kzo9I GATC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 5 cut(s) 38, 49, 63, 172, 249
LweI GCATC 1 cut(s) 39
MaeI CTAG 1 cut(s) 265
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 5 cut(s) 35, 52, 133, 177, 231
MhlI GDGCHC 2 cut(s) 31, 43
MlyI GAGTC 2 cut(s) 16, 185
MseI TTAA 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 96
MvnI CGCG 1 cut(s) 96
NdeII GATC 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 48
PleI GAGTC 2 cut(s) 15, 185
PpsI GAGTC 2 cut(s) 15, 185
Ppu21I YACGTR 1 cut(s) 208
Psp124BI GAGCTC 2 cut(s) 31, 43
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 233
SacI GAGCTC 2 cut(s) 31, 43
SacII CCGCGG 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 2 cut(s) 16, 185
SduI GDGCHC 2 cut(s) 31, 43
SetI ASST 6 cut(s) 21, 31, 43, 200, 210, 238
SfaNI GCATC 1 cut(s) 39
Sfr303I CCGCGG 1 cut(s) 97
SgrBI CCGCGG 1 cut(s) 97
SinI GGWCC 1 cut(s) 233
SsiI CCGC 2 cut(s) 94, 96
SspMI CTAG 1 cut(s) 265
SstI GAGCTC 2 cut(s) 31, 43
TaaI ACNGT 3 cut(s) 118, 124, 181
TaiI ACGT 1 cut(s) 210
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 117, 236
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 233
XspI CTAG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.