FvH4_6g49720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016647
Physical Location & Seq
Forward (+)
37184983 .. 37185468
486 bp
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UTR
Exon/CDS
Intron
FvH4_6g49720.t1

Sequence Viewer

Length: 486 bp
ATGGACAAGAGAAGAGAGTTGAGTGGGAGAGTAACGAAGCAAAGAGAGGTTCTTCGAGTGCAAGAGTATGTCATGCACATGGTTTTGCTCACCGCCGGAGCATCTGCGTCGGTTTTGATGGTGTTTCTCATGGAGCAGTGGCGGGCGTGGGTGTTCATCGTTCTCAACCTCGTCCTCTTGGCCATTCTTTTCACTTCAGTCTCTTCCACCTCAGACGATCATCAGGAATGCAAAAACAACGATGACGAAGCAGATCGAGTTCCGGTCAAGGTTGAAATGAAGAAGGAGACGAGGCAATGTAGGTGGCCACCGGCGCAAGTTGATCAAGAAGTGGTTAAAGAATGGGAAGAGGAAGAGTGGTTCGAAATTGAAGACAAGCCGGAGGAGGAGGAGGTTCCGAAGCTGTCCAAGGAGGCTCTGAATGAGAGAGTGGAAGCCTTCATTGTTATGTTTCGGCAGCACTTGGTTTCAGATGCAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

162

Amino Acids

19.01

Weight (kDa)

4.9

Isoelectric Point (pI)

52.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2244 PF10003 21 - 131 6e-06 Integral membrane protein (DUF2244)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016647)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28420
fragaria_vesca FvH4_6g49720
prunus_persica Prupe.3G275600_v2.0.a1
pyrus_communis pycom17g03880
rosa_chinensis RchiOBHm_Chr2g0169751
rosa_laevigata RLG00000021899
rosa_multiflora Rmu_ssc0000389.1_g000030
rosa_roxburghii Rroxscaffold_2G00081820
rosa_rugosa Rorug02G0542700.1
rosa_samantha Rh2AG614900 Rh2BG627200 Rh2CG596600 Rh2DG638000
rosa_wichuraiana Rw2G050980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 93, 142
AcoI YGGCCR 2 cut(s) 180, 305
AcuI CTGAAG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 275, 371
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
Alw26I GTCTC 2 cut(s) 205, 281
AoxI GGCC 2 cut(s) 180, 305
ApeKI GCWGC 1 cut(s) 457
AspLEI GCGC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 363
BalI TGGCCA 2 cut(s) 182, 307
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 469
BccI CCATC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 205, 281
BisI GCNGC 1 cut(s) 458
BlsI GCNGC 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 396
BmsI GCATC 2 cut(s) 110, 463
BpiI GAAGAC 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 408
BsaWI WCCGGW 1 cut(s) 262
Bse118I RCCGGY 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 408
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 3 cut(s) 398, 401, 404
BseXI GCAGC 1 cut(s) 469
BshFI GGCC 2 cut(s) 182, 307
BsiSI CCGG 4 cut(s) 96, 263, 311, 380
BsmAI GTCTC 2 cut(s) 205, 281
BsmBI CGTCTC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 2 cut(s) 182, 307
Bsp119I TTCGAA 1 cut(s) 363
Bsp143I GATC 3 cut(s) 217, 253, 322
BspACI CCGC 2 cut(s) 93, 142
BspANI GGCC 2 cut(s) 182, 307
BspCNI CTCAG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 396
BspT104I TTCGAA 1 cut(s) 363
BsrDI GCAATG 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 3 cut(s) 217, 253, 322
BssT1I CCWWGG 1 cut(s) 408
Bst6I CTCTTC 4 cut(s) 7, 208, 342, 348
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 3 cut(s) 220, 256, 325
BstMAI GTCTC 2 cut(s) 205, 281
BstMBI GATC 3 cut(s) 217, 253, 322
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 378
BsuRI GGCC 2 cut(s) 182, 307
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 144
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 310
CseI GACGC 1 cut(s) 96
CspCI CAANNNNNGTGG 2 cut(s) 284, 319
CviAII CATG 3 cut(s) 73, 79, 130
CviJI RGCY 6 cut(s) 182, 307, 379, 403, 416, 437
CviKI_1 RGCY 6 cut(s) 182, 307, 379, 403, 416, 437
DdeI CTNAG 1 cut(s) 211
DpnI GATC 3 cut(s) 219, 255, 324
DpnII GATC 3 cut(s) 217, 253, 322
EaeI YGGCCR 2 cut(s) 180, 305
Eam1104I CTCTTC 4 cut(s) 7, 208, 342, 348
EarI CTCTTC 4 cut(s) 7, 208, 342, 348
Eco130I CCWWGG 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 3 cut(s) 76, 82, 133
FaiI YATR 5 cut(s) 69, 74, 80, 131, 449
FatI CATG 3 cut(s) 72, 78, 129
FauI CCCGC 1 cut(s) 135
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 458
Fsp4HI GCNGC 1 cut(s) 458
GlaI GCGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 458
HaeIII GGCC 2 cut(s) 182, 307
HapII CCGG 4 cut(s) 96, 263, 311, 380
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 316
Hin1II CATG 3 cut(s) 76, 82, 133
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HpaII CCGG 4 cut(s) 96, 263, 311, 380
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 4 cut(s) 214, 399, 420, 472
Hpy188III TCNNGA 2 cut(s) 224, 326
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 277, 448
HpyCH4V TGCA 4 cut(s) 61, 76, 231, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 1 cut(s) 211
Hsp92II CATG 3 cut(s) 76, 82, 133
HspAI GCGC 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 3 cut(s) 217, 253, 322
LmnI GCTCC 2 cut(s) 98, 133
LpnPI CCDG 5 cut(s) 109, 209, 276, 324, 393
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 2 cut(s) 110, 463
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 219, 255, 324
MboI GATC 3 cut(s) 217, 253, 322
MboII GAAGA 7 cut(s) 24, 44, 195, 292, 359, 365, 383
MlsI TGGCCA 2 cut(s) 182, 307
MluCI AATT 2 cut(s) 366, 481
MluNI TGGCCA 2 cut(s) 182, 307
Mox20I TGGCCA 2 cut(s) 182, 307
MscI TGGCCA 2 cut(s) 182, 307
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 2 cut(s) 77, 446
Msp20I TGGCCA 2 cut(s) 182, 307
MspI CCGG 4 cut(s) 96, 263, 311, 380
Mva1269I GAATGC 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 313
NdeII GATC 3 cut(s) 217, 253, 322
NlaIII CATG 3 cut(s) 76, 82, 133
NlaIV GGNNCC 1 cut(s) 396
NspV TTCGAA 1 cut(s) 363
PctI GAATGC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 396
RseI CAYNNNNRTG 2 cut(s) 77, 446
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 458
Sau3AI GATC 3 cut(s) 217, 253, 322
SetI ASST 7 cut(s) 51, 171, 212, 273, 305, 396, 405
SfaNI GCATC 2 cut(s) 110, 463
SfuI TTCGAA 1 cut(s) 363
SgrAI CRCCGGYG 1 cut(s) 310
SmiMI CAYNNNNRTG 2 cut(s) 77, 446
Sse9I AATT 2 cut(s) 366, 481
SsiI CCGC 2 cut(s) 93, 142
StyI CCWWGG 1 cut(s) 408
TaqI TCGA 3 cut(s) 55, 256, 363
TasI AATT 2 cut(s) 366, 481
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 143
TseI GCWGC 1 cut(s) 457
TspDTI ATGAA 3 cut(s) 145, 293, 430
TspRI CASTG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.