Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016647

Physical Location & Seq

Genomic Coordinates Forward (+)

25397683 .. 25398729

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G275600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGATGGGAAAAGAGAGTGAGAGAGTAACAAAGGAGAGAGAGCTTCAAGAGTATATTGTGCACACAGTTTTGTTCACTGCAGGAGCAGCTGTGTTAATGGCGTGTTTACAACGTGTTATATTAACGGTGTTTCTCATGGAGCAATGGCGGGCATGGGTTTTCCTTGTGCTCAACCTCATCCTCTTAGCCATTCTCTTCACTCCCATTTCTTCCACCTCAAATTTTGATCAAAACCAACAATGCAGCAGCAACAACAGCAATGCAGAAGTGGTCGAGAATATTGAACCGAAAAATAAGAGAAGGGAATATTACAGGTGCCCGTCATCAGAACAAGCAGTTGAAGAAGTTAAAGAATGTGATGAAGAAATATGTAAGAAGAGATCGACGAGTGTCGAGAATGAGGAAGAGGGTTTTGAAGACCAGACAGAGGAGGTTTCCAAGGAGGCCCTGAATGAGAGAGTGGAAGCTTTCATTGTGATGTTCAGGCAGCATTTGGTGTCGGATGCAAGAAATGAATCAAGGTGGAAACAAGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

181

Amino Acids

20.99

Weight (kDa)

4.81

Isoelectric Point (pI)

69.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28420
fragaria_vesca	FvH4_6g49720
prunus_persica	Prupe.3G275600_v2.0.a1
pyrus_communis	pycom17g03880
rosa_chinensis	RchiOBHm_Chr2g0169751
rosa_laevigata	RLG00000021899
rosa_multiflora	Rmu_ssc0000389.1_g000030
rosa_roxburghii	Rroxscaffold_2G00081820
rosa_rugosa	Rorug02G0542700.1
rosa_samantha	Rh2AG614900 Rh2BG627200 Rh2CG596600 Rh2DG638000
rosa_wichuraiana	Rw2G050980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	318
AciI	CCGC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	4 cut(s)	50, 287, 344, 419
AluBI	AGCT	3 cut(s)	46, 92, 470
AluI	AGCT	3 cut(s)	46, 92, 470
Alw21I	GWGCWC	2 cut(s)	66, 174
Alw44I	GTGCAC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	447
ApaLI	GTGCAC	1 cut(s)	62
ApeKI	GCWGC	4 cut(s)	89, 246, 249, 490
ApoI	RAATTY	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	448
BaeGI	GKGCMC	2 cut(s)	66, 323
BanI	GGYRCC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	66, 174
BbvI	GCAGC	4 cut(s)	101, 258, 261, 502
BclI	TGATCA	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	4 cut(s)	90, 247, 250, 491
BlsI	GCNGC	4 cut(s)	91, 248, 251, 492
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	320
BmsI	GCATC	1 cut(s)	496
BoxI	GACNNNNGTC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse3DI	GCAATG	2 cut(s)	152, 268
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	180, 511
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMI	GCAATG	2 cut(s)	152, 268
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	2 cut(s)	66, 323
BseXI	GCAGC	4 cut(s)	101, 258, 261, 502
BshFI	GGCC	1 cut(s)	449
BshNI	GGYRCC	1 cut(s)	318
BsiHKAI	GWGCWC	2 cut(s)	66, 174
BslI	CCNNNNNNNGG	1 cut(s)	430
BsnI	GGCC	1 cut(s)	449
Bsp1286I	GDGCHC	3 cut(s)	66, 174, 323
Bsp143I	GATC	2 cut(s)	229, 383
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	449
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	318
BsrDI	GCAATG	2 cut(s)	152, 268
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	229, 383
BssT1I	CCWWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	70, 130
Bst6I	CTCTTC	3 cut(s)	203, 374, 402
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	180, 511
BstKTI	GATC	2 cut(s)	232, 386
BstMBI	GATC	2 cut(s)	229, 383
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 258
BstPAI	GACNNNNGTC	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	2 cut(s)	66, 323
BstV1I	GCAGC	4 cut(s)	101, 258, 261, 502
BstV2I	GAAGAC	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	449
BtsCI	GGATG	2 cut(s)	180, 511
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	448
CviAII	CATG	2 cut(s)	139, 156
CviJI	RGCY	5 cut(s)	46, 92, 191, 449, 470
CviKI_1	RGCY	5 cut(s)	46, 92, 191, 449, 470
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	2 cut(s)	231, 385
DpnII	GATC	2 cut(s)	229, 383
Eam1104I	CTCTTC	3 cut(s)	203, 374, 402
EarI	CTCTTC	3 cut(s)	203, 374, 402
Eco130I	CCWWGG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	2 cut(s)	142, 159
FaiI	YATR	5 cut(s)	57, 122, 140, 157, 373
FatI	CATG	2 cut(s)	138, 155
FauI	CCCGC	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	90, 247, 250, 491
FokI	GGATG	2 cut(s)	167, 518
Fsp4HI	GCNGC	4 cut(s)	90, 247, 250, 491
GluI	GCNGC	4 cut(s)	90, 247, 250, 491
HaeIII	GGCC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	142, 159
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	1 cut(s)	518
Hpy166II	GTNNAC	3 cut(s)	64, 78, 110
Hpy188I	TCNGA	2 cut(s)	331, 505
Hpy188III	TCNNGA	3 cut(s)	50, 277, 397
Hpy8I	GTNNAC	3 cut(s)	64, 78, 110
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	2 cut(s)	70, 130
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	5 cut(s)	64, 83, 246, 266, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 258
HpyF3I	CTNAG	1 cut(s)	187
HpySE526I	ACGT	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	142, 159
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	229, 383
LmnI	GCTCC	2 cut(s)	86, 142
LpnPI	CCDG	5 cut(s)	69, 301, 437, 464, 472
Lsp1109I	GCAGC	4 cut(s)	101, 258, 261, 502
LweI	GCATC	1 cut(s)	496
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	231, 385
MboI	GATC	2 cut(s)	229, 383
MboII	GAAGA	7 cut(s)	190, 204, 356, 377, 391, 419, 431
MhlI	GDGCHC	3 cut(s)	66, 174, 323
MluCI	AATT	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	8 cut(s)	188, 194, 229, 397, 403, 424, 427, 439
MseI	TTAA	3 cut(s)	98, 125, 351
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	89, 258
NdeII	GATC	2 cut(s)	229, 383
NlaIII	CATG	2 cut(s)	142, 159
NlaIV	GGNNCC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	4 cut(s)	91, 248, 251, 492
PshAI	GACNNNNGTC	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	448
PstI	CTGCAG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	3 cut(s)	98, 125, 351
SatI	GCNGC	4 cut(s)	90, 247, 250, 491
Sau3AI	GATC	2 cut(s)	229, 383
Sau96I	GGNCC	1 cut(s)	448
SduI	GDGCHC	3 cut(s)	66, 174, 323
SetI	ASST	9 cut(s)	48, 94, 118, 180, 221, 320, 438, 472, 527
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	151
SspI	AATATT	2 cut(s)	283, 311
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	70, 130
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	276, 386, 396
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	3 cut(s)	98, 125, 351
Tru9I	TTAA	3 cut(s)	98, 125, 351
TscAI	CASTG	1 cut(s)	85
TseI	GCWGC	4 cut(s)	89, 246, 249, 490
TspDTI	ATGAA	3 cut(s)	378, 463, 531
TspRI	CASTG	1 cut(s)	85
VneI	GTGCAC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.