Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016647

Physical Location & Seq

Genomic Coordinates Forward (+)

79133307 .. 79133798

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021899

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAGAAGAGAAGAGAGTTGAGTGGGAGATCAGTAACGAAGCAAAGAGAGCTTCTTCAAGTTCAAGACTGTGTCATGCACATGGTTTTGCTCACCGCCGGAGCATCTGTGTCCGTTTTGATGGTGTTTCTCATGGAGCAGTGGCGGGCGTGGGTGTTCATCGTTCTCAACCTCGTCCTCTTAGCCATTCTTTTCACTTCAGTCTCGTCCACCTCAGATGAAAATCAAGAACGCAAAAACAGCAACGACGAGGCAGATCGAGTTCCGGTCAAAGTTGAAATGAAGAAGGAGATGAGGCAATGTAGGTGGCCACCGGCGCAAGTTGATCAAGAAGTGGTTAAAGAATGTGATGAGGAAGAGAACTGGTTCGAAGTTGAAGACAAGCCGGAGGAAGAGGAGGTTCCGAAGCTGTCAAAGGAGGCTCTGAATGAGAGAGTGGAAGCTTTCATTGTTATGTTCCGGCAGCATTTGGTTTCAGATGCAAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

164

Amino Acids

19.1

Weight (kDa)

4.89

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28420
fragaria_vesca	FvH4_6g49720
prunus_persica	Prupe.3G275600_v2.0.a1
pyrus_communis	pycom17g03880
rosa_chinensis	RchiOBHm_Chr2g0169751
rosa_laevigata	RLG00000021899
rosa_multiflora	Rmu_ssc0000389.1_g000030
rosa_roxburghii	Rroxscaffold_2G00081820
rosa_rugosa	Rorug02G0542700.1
rosa_samantha	Rh2AG614900 Rh2BG627200 Rh2CG596600 Rh2DG638000
rosa_wichuraiana	Rw2G050980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 145
AcoI	YGGCCR	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	183
AgsI	TTSAA	4 cut(s)	59, 65, 278, 377
AluBI	AGCT	3 cut(s)	52, 409, 443
AluI	AGCT	3 cut(s)	52, 409, 443
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	463
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	402
BmsI	GCATC	2 cut(s)	113, 469
BpiI	GAAGAC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bse118I	RCCGGY	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	222
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	475
BshFI	GGCC	1 cut(s)	310
BsiSI	CCGG	5 cut(s)	99, 266, 314, 386, 460
BsmAI	GTCTC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	310
Bsp119I	TTCGAA	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	29, 256, 325
BspACI	CCGC	2 cut(s)	96, 145
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	402
BspT104I	TTCGAA	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	313
BssMI	GATC	3 cut(s)	29, 256, 325
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	4 cut(s)	2, 7, 351, 387
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	181, 214
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	3 cut(s)	32, 259, 328
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	3 cut(s)	29, 256, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 240, 316
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	319
Cfr10I	RCCGGY	1 cut(s)	313
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CviAII	CATG	3 cut(s)	76, 82, 133
CviJI	RGCY	7 cut(s)	52, 185, 310, 385, 409, 422, 443
CviKI_1	RGCY	7 cut(s)	52, 185, 310, 385, 409, 422, 443
DdeI	CTNAG	2 cut(s)	181, 214
DpnI	GATC	3 cut(s)	31, 258, 327
DpnII	GATC	3 cut(s)	29, 256, 325
EaeI	YGGCCR	1 cut(s)	308
Eam1104I	CTCTTC	4 cut(s)	2, 7, 351, 387
EarI	CTCTTC	4 cut(s)	2, 7, 351, 387
Eco57I	CTGAAG	1 cut(s)	183
FaeI	CATG	3 cut(s)	79, 85, 136
FaiI	YATR	4 cut(s)	77, 83, 134, 455
FatI	CATG	3 cut(s)	75, 81, 132
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	464
Fsp4HI	GCNGC	1 cut(s)	464
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	5 cut(s)	99, 266, 314, 386, 460
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	79, 85, 136
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HindIII	AAGCTT	1 cut(s)	441
HpaII	CCGG	5 cut(s)	99, 266, 314, 386, 460
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	4 cut(s)	217, 405, 426, 478
Hpy188III	TCNNGA	3 cut(s)	65, 227, 329
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	79, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 240, 316
HpyF3I	CTNAG	2 cut(s)	181, 214
Hsp92II	CATG	3 cut(s)	79, 85, 136
HspAI	GCGC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	29, 256, 325
LmnI	GCTCC	2 cut(s)	101, 136
LpnPI	CCDG	6 cut(s)	112, 279, 327, 349, 399, 473
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	2 cut(s)	113, 469
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	31, 258, 327
MboI	GATC	3 cut(s)	29, 256, 325
MboII	GAAGA	7 cut(s)	19, 24, 47, 295, 368, 389, 404
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	1 cut(s)	487
MluNI	TGGCCA	1 cut(s)	310
Mox20I	TGGCCA	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	2 cut(s)	80, 452
Msp20I	TGGCCA	1 cut(s)	310
MspI	CCGG	5 cut(s)	99, 266, 314, 386, 460
MwoI	GCNNNNNNNGC	3 cut(s)	49, 240, 316
NdeII	GATC	3 cut(s)	29, 256, 325
NlaIII	CATG	3 cut(s)	79, 85, 136
NlaIV	GGNNCC	1 cut(s)	402
NspV	TTCGAA	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	365
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	465
PspN4I	GGNNCC	1 cut(s)	402
PsyI	GACNNNGTC	1 cut(s)	71
RseI	CAYNNNNRTG	2 cut(s)	80, 452
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	464
Sau3AI	GATC	3 cut(s)	29, 256, 325
SetI	ASST	7 cut(s)	54, 174, 215, 308, 402, 411, 445
SfaNI	GCATC	2 cut(s)	113, 469
SfuI	TTCGAA	1 cut(s)	369
SgrAI	CRCCGGYG	1 cut(s)	313
SmiMI	CAYNNNNRTG	2 cut(s)	80, 452
Sse9I	AATT	1 cut(s)	487
SsiI	CCGC	2 cut(s)	96, 145
TaaI	ACNGT	1 cut(s)	71
TaqI	TCGA	2 cut(s)	259, 369
TasI	AATT	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	146
TseI	GCWGC	1 cut(s)	463
TspDTI	ATGAA	4 cut(s)	148, 234, 296, 436
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.