RchiOBHm_Chr2g0169751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016647
Physical Location & Seq
Forward (+)
83906331 .. 83908487
2157 bp
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UTR
Exon/CDS
Intron
PRQ53732

Sequence Viewer

Length: 489 bp
ATGGAAAAGAGAAGAGAGTTGAGTGGGAGATCAGTAACGAAGCAAAGAGAGCTTCTTCAAGCTCAAGACTATGTCATGCACATGGTTTTGCTCACCGCGGGAGCATCTGTGTCGGTTTTGATGGTGTTTCTCATGGAGCAGTGGCGGGCGTGGGTGTTCATCGTTCTCAACCTCGTCCTCTTAGCCATTCTTTTCACTTCAGTCTCGTCCACCTCAGATGAAAATCAAGAACGCAAAAACAGCAACGACGAGGCAGATCGAGTTCCGGTCAAAGTTGAAATGACGAAGGAGATGAGGCAATGTAGTTGGCCACCGGCGCAAGTTGATCAAGAAGTGGTTAAAGAATGTGATGAGGAAGAGTGGTTCGAAGTTGAAGACAAGCCGGAGGAGGAGGAGGTTCCGAAGCTGTCAAAGGAGGCTCTGAATGAGAGAGTGGAAGCTTTCATTGTTATGTTCCGGCAGCATTTGGTTTCAGATGCAAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

162

Amino Acids

18.92

Weight (kDa)

4.75

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016647)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28420
fragaria_vesca FvH4_6g49720
prunus_persica Prupe.3G275600_v2.0.a1
pyrus_communis pycom17g03880
rosa_chinensis RchiOBHm_Chr2g0169751
rosa_laevigata RLG00000021899
rosa_multiflora Rmu_ssc0000389.1_g000030
rosa_roxburghii Rroxscaffold_2G00081820
rosa_rugosa Rorug02G0542700.1
rosa_samantha Rh2AG614900 Rh2BG627200 Rh2CG596600 Rh2DG638000
rosa_wichuraiana Rw2G050980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AciI CCGC 3 cut(s) 96, 98, 145
AcoI YGGCCR 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 183
AgsI TTSAA 3 cut(s) 59, 278, 374
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 4 cut(s) 52, 62, 406, 440
AluI AGCT 4 cut(s) 52, 62, 406, 440
Alw26I GTCTC 1 cut(s) 208
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 460
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 366
BalI TGGCCA 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 472
BccI CCATC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 208
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
BmiI GGNNCC 1 cut(s) 399
BmsI GCATC 2 cut(s) 113, 466
BpiI GAAGAC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse118I RCCGGY 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 305
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 222
BseMI GCAATG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 3 cut(s) 401, 404, 407
BseXI GCAGC 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 310
BsiSI CCGG 4 cut(s) 266, 314, 383, 457
BsmAI GTCTC 1 cut(s) 208
BsnI GGCC 1 cut(s) 310
Bsp119I TTCGAA 1 cut(s) 366
Bsp143I GATC 3 cut(s) 29, 256, 325
BspACI CCGC 3 cut(s) 96, 98, 145
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 227
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 399
BspT104I TTCGAA 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 29, 256, 325
Bst6I CTCTTC 2 cut(s) 7, 351
BstBI TTCGAA 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 181, 214
BstDSI CCRYGG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 3 cut(s) 32, 259, 328
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 3 cut(s) 29, 256, 325
BstMWI GCNNNNNNNGC 3 cut(s) 49, 240, 316
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 381
BsuRI GGCC 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 313
Cfr42I CCGCGG 1 cut(s) 99
CviAII CATG 3 cut(s) 76, 82, 133
CviJI RGCY 8 cut(s) 52, 62, 185, 310, 382, 406, 419, 440
CviKI_1 RGCY 8 cut(s) 52, 62, 185, 310, 382, 406, 419, 440
DdeI CTNAG 2 cut(s) 181, 214
DpnI GATC 3 cut(s) 31, 258, 327
DpnII GATC 3 cut(s) 29, 256, 325
EaeI YGGCCR 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 7, 351
EarI CTCTTC 2 cut(s) 7, 351
Eco57I CTGAAG 1 cut(s) 183
FaeI CATG 3 cut(s) 79, 85, 136
FaiI YATR 5 cut(s) 72, 77, 83, 134, 452
FatI CATG 3 cut(s) 75, 81, 132
FauI CCCGC 2 cut(s) 91, 138
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 461
Fsp4HI GCNGC 1 cut(s) 461
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 461
HaeIII GGCC 1 cut(s) 310
HapII CCGG 4 cut(s) 266, 314, 383, 457
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 79, 85, 136
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HindIII AAGCTT 1 cut(s) 438
HpaII CCGG 4 cut(s) 266, 314, 383, 457
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 4 cut(s) 217, 402, 423, 475
Hpy188III TCNNGA 3 cut(s) 65, 227, 329
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 79, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 240, 316
HpyF3I CTNAG 2 cut(s) 181, 214
Hsp92II CATG 3 cut(s) 79, 85, 136
HspAI GCGC 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 325
KspI CCGCGG 1 cut(s) 99
Kzo9I GATC 3 cut(s) 29, 256, 325
LmnI GCTCC 2 cut(s) 101, 136
LpnPI CCDG 4 cut(s) 279, 327, 396, 470
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 2 cut(s) 113, 466
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 31, 258, 327
MboI GATC 3 cut(s) 29, 256, 325
MboII GAAGA 4 cut(s) 24, 47, 368, 386
MlsI TGGCCA 1 cut(s) 310
MluCI AATT 1 cut(s) 484
MluNI TGGCCA 1 cut(s) 310
Mox20I TGGCCA 1 cut(s) 310
MscI TGGCCA 1 cut(s) 310
MseI TTAA 1 cut(s) 339
MslI CAYNNNNRTG 2 cut(s) 80, 449
Msp20I TGGCCA 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 4 cut(s) 266, 314, 383, 457
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 49, 240, 316
NdeII GATC 3 cut(s) 29, 256, 325
NlaIII CATG 3 cut(s) 79, 85, 136
NlaIV GGNNCC 1 cut(s) 399
NspV TTCGAA 1 cut(s) 366
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 399
PsyI GACNNNGTC 1 cut(s) 71
RseI CAYNNNNRTG 2 cut(s) 80, 449
SacII CCGCGG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 3 cut(s) 29, 256, 325
SetI ASST 7 cut(s) 54, 64, 174, 215, 399, 408, 442
SfaNI GCATC 2 cut(s) 113, 466
Sfr303I CCGCGG 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 366
SgrAI CRCCGGYG 1 cut(s) 313
SgrBI CCGCGG 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 80, 449
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 484
SsiI CCGC 3 cut(s) 96, 98, 145
TaqI TCGA 2 cut(s) 259, 366
TasI AATT 1 cut(s) 484
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 146
TseI GCWGC 1 cut(s) 460
TspDTI ATGAA 3 cut(s) 148, 234, 433
TspRI CASTG 1 cut(s) 146
Tth111I GACNNNGTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.