FvH4_6g51480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015478
Physical Location & Seq
Forward (+)
38164444 .. 38167186
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51480.t1

Sequence Viewer

Length: 339 bp
ATGGCGATGGTCTCCTTAAACCTCGTCACCGGCCCAAATCCAAAGCTGCTCCAGGTGAGTTGCAGAAAGAAAGAGAGGAGCAGAGATAACTATGACCCTTACAAAGTCATCGAAATTACGCCTCCGCCCAAGAACCTCGGCGTCCGTTGCTTCCCCTCTAACATGCAATGTGGGGAGATTGTGACAATTGAAAGCCAAACTTATACAATCTCGGCTGTAACTCATAGGTACCAGCTTCGCAAGGGGAAGTACGAACCAAGCGAGAAGAGGCTCGATGTCTTGTCGACATCGAGATATGTCTTGAATTTGTACTTGGATAATTTACTAGAACAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.88

Weight (kDa)

9.22

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40500 AT5G40500
fragaria_vesca FvH4_6g51480 FvH4_6g51480
malus_domestica MD17G1026500.v1.1
prunus_persica Prupe.3G292200_v2.0.a1
pyrus_communis pycom17g02160
rosa_chinensis RchiOBHm_Chr2g0173121
rosa_laevigata RLG00000022160
rosa_roxburghii Rroxscaffold_2G00079220
rosa_rugosa Rorug02G0565500
rosa_samantha Rh2AG645500 Rh2BG656200 Rh2CG621300 Rh2DG669600
rosa_wichuraiana Rw2G053010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 228
AccI GTMKAC 1 cut(s) 284
AciI CCGC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 3 cut(s) 230, 251, 311
AgsI TTSAA 2 cut(s) 191, 304
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 2 cut(s) 46, 235
AluI AGCT 2 cut(s) 46, 235
Alw26I GTCTC 1 cut(s) 16
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 304
Asp718I GGTACC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 19, 67
BanI GGYRCC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 33
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 16
BsnI GGCC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 16
BspACI CCGC 1 cut(s) 125
BspANI GGCC 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 228
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 173
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 229, 250, 310
CviAII CATG 1 cut(s) 163
CviJI RGCY 6 cut(s) 33, 46, 195, 215, 235, 271
CviKI_1 RGCY 6 cut(s) 33, 46, 195, 215, 235, 271
CviQI GTAC 3 cut(s) 229, 250, 310
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 166
FaiI YATR 5 cut(s) 93, 164, 204, 225, 297
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FatI CATG 1 cut(s) 162
FblI GTMKAC 1 cut(s) 284
Fnu4HI GCNGC 1 cut(s) 47
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 1 cut(s) 326
GluI GCNGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 166
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 19, 67
Hpy166II GTNNAC 1 cut(s) 285
Hpy188III TCNNGA 3 cut(s) 291, 301, 336
Hpy8I GTNNAC 1 cut(s) 285
HpyCH4V TGCA 2 cut(s) 63, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 166
KpnI GGTACC 1 cut(s) 232
LmnI GCTCC 2 cut(s) 54, 78
LpnPI CCDG 4 cut(s) 38, 43, 65, 245
Lsp1109I GCAGC 1 cut(s) 33
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 3 cut(s) 25, 181, 217
MboII GAAGA 1 cut(s) 277
MfeI CAATTG 1 cut(s) 186
MluCI AATT 4 cut(s) 114, 186, 304, 319
MnlI CCTC 6 cut(s) 32, 69, 132, 146, 166, 261
MseI TTAA 1 cut(s) 17
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 147
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 230
NmeAIII GCCGAG 2 cut(s) 117, 191
NmuCI GTSAC 2 cut(s) 25, 181
NspI RCATGY 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PkrI GCNGC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 32
RsaI GTAC 3 cut(s) 230, 251, 311
RsaNI GTAC 3 cut(s) 229, 250, 310
SalI GTCGAC 1 cut(s) 283
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 53
SetI ASST 6 cut(s) 24, 48, 57, 138, 230, 237
Sse9I AATT 4 cut(s) 114, 186, 304, 319
SsiI CCGC 1 cut(s) 125
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 51
TaqI TCGA 4 cut(s) 111, 273, 284, 290
TasI AATT 4 cut(s) 114, 186, 304, 319
TatI WGTACW 1 cut(s) 309
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TseFI GTSAC 2 cut(s) 25, 181
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 2 cut(s) 25, 181
TspGWI ACGGA 1 cut(s) 134
XapI RAATTY 1 cut(s) 304
XceI RCATGY 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 284
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.