Rh2DG669600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015478
Physical Location & Seq
Forward (+)
89330927 .. 89333175
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG669600.1

Sequence Viewer

Length: 486 bp
ATGAATACTTGTCGTTCTCAATTTTTTCTCTTTCAAAAAAAAAATAATAATAATAAAACAGTCGAACTGTTTCTTTTTTTTTTTGCTGGCATTCCATCTCCTTTGTCTGAAGTATCAGCCACAGAGGGAGAACCAGAGCTCGAGACAATGGCAATGGTCTCCTTGAACCTCCGCACTGGCCCAAATCCAAAGCTGCTTCAAGTCTGTTGCAGAAAGAAAGAGAGGAGCAGAGATAACTATGACCCCTACAAAGTCGTCGAAATTACGCCTCCGCCCAAGAACCTCGGCGTTCGTTGCTTTCCCTCTAACATGCAATGCGGGGAGATTGTGACAATAGAAAGCCAAACCTACACAATCTCGGCTGTAACTCATAGGTACCAGCTTCGGAAGGGGAAGTATGAACCGAGCGAGAAGAGGCTCGATGTCTTGTCCACAGCGAGATACGTTTTGAATATATACTTGGATAATTTACTAGAACAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.51

Weight (kDa)

8.8

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40500 AT5G40500
fragaria_vesca FvH4_6g51480 FvH4_6g51480
malus_domestica MD17G1026500.v1.1
prunus_persica Prupe.3G292200_v2.0.a1
pyrus_communis pycom17g02160
rosa_chinensis RchiOBHm_Chr2g0173121
rosa_laevigata RLG00000022160
rosa_roxburghii Rroxscaffold_2G00079220
rosa_rugosa Rorug02G0565500
rosa_samantha Rh2AG645500 Rh2BG656200 Rh2CG621300 Rh2DG669600
rosa_wichuraiana Rw2G053010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 375
AciI CCGC 3 cut(s) 172, 272, 318
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 377
AgsI TTSAA 4 cut(s) 35, 166, 200, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 3 cut(s) 139, 193, 382
AluI AGCT 3 cut(s) 139, 193, 382
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 137, 163
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 140
BanI GGYRCC 1 cut(s) 375
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 137, 163
BfaI CTAG 1 cut(s) 473
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 283
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 2 cut(s) 159, 320
BseDI CCNNGG 1 cut(s) 283
BseMI GCAATG 2 cut(s) 159, 320
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 140
BsmAI GTCTC 2 cut(s) 137, 163
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 163
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 141
BspACI CCGC 3 cut(s) 172, 272, 318
BspANI GGCC 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 375
BspTNI GGTCTC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 159, 320
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 61, 69
Bst6I CTCTTC 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 137, 163
BstMWI GCNNNNNNNGC 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 376
CviAII CATG 1 cut(s) 310
CviJI RGCY 8 cut(s) 119, 139, 180, 193, 342, 362, 382, 418
CviKI_1 RGCY 8 cut(s) 119, 139, 180, 193, 342, 362, 382, 418
CviQI GTAC 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
EciI GGCGGA 1 cut(s) 261
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 139
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 1 cut(s) 313
FaiI YATR 6 cut(s) 240, 311, 372, 399, 455, 457
FatI CATG 1 cut(s) 309
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 194
FspBI CTAG 1 cut(s) 473
GluI GCNGC 1 cut(s) 194
HaeIII GGCC 1 cut(s) 180
Hin1II CATG 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 432
Hpy188I TCNGA 2 cut(s) 109, 387
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 432
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 2 cut(s) 61, 69
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 2 cut(s) 210, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 1 cut(s) 313
KpnI GGTACC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 4 cut(s) 72, 147, 162, 392
Lsp1109I GCAGC 1 cut(s) 180
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 328, 364
MboII GAAGA 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 3 cut(s) 20, 261, 466
MnlI CCTC 7 cut(s) 118, 179, 216, 279, 293, 313, 408
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 484
Mva1269I GAATGC 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 294
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 377
NmeAIII GCCGAG 2 cut(s) 264, 338
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 313
PaeR7I CTCGAG 1 cut(s) 140
PctI GAATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 69
PkrI GCNGC 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 1 cut(s) 179
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 484
SatI GCNGC 1 cut(s) 194
Sau96I GGNCC 1 cut(s) 179
SduI GDGCHC 1 cut(s) 141
SetI ASST 8 cut(s) 141, 171, 195, 285, 350, 377, 384, 447
Sfr274I CTCGAG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 3 cut(s) 20, 261, 466
SsiI CCGC 3 cut(s) 172, 272, 318
SspMI CTAG 1 cut(s) 473
SstI GAGCTC 1 cut(s) 141
TaaI ACNGT 2 cut(s) 61, 69
TaiI ACGT 1 cut(s) 447
TaqI TCGA 4 cut(s) 63, 141, 258, 420
TasI AATT 3 cut(s) 20, 261, 466
Tru1I TTAA 1 cut(s) 484
Tru9I TTAA 1 cut(s) 484
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 17, 414
TspRI CASTG 1 cut(s) 181
XceI RCATGY 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.