Rroxscaffold_2G00079220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015478
Physical Location & Seq
Reverse (-)
2248860 .. 2253295
4436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079220.1

Sequence Viewer

Length: 999 bp
ATGATTAAAGCGGTGATTCAAGCTATCCCCTCTTATGTGATGAATTGCTTTGAACTCCCACAATATCTTTGTGATGAGATGCATAGATTGGTGGCTCAATTTTGGTTGGGTGACTCGGAGGAAAAAGGGCGGATTCACCGGATTGCATGGAATAAACTTTGCATACATAAGAAAGATGGGGATCTTGGCTTTCATAACATGCATGATTTTAACTTAGCGTTACTAGCTAAGCGAGGTTGGCTGATTCTTCAACATCCGAAGGCTCTTCTATCTAGGCTTCTCAATGCCAAGTATTTTCCCGAGGTTAGCTTTATGGAGGCAAGACTTGAAAAGGGGGCATCATATACATGGCGAAGCATTATGGCGAGGAAGGCAAGTCCCGGAAAAGGGTTTGCGTTTTCAAGTGGGCCGTGGAAACTCTATTTCGGTTTGGGAGTTGCAGCCTTAGCAAGGCCGTTTGATTATGCTCACTCCGCTTTGCATATGGAGTTTGAGGCATGTAGAGCGGCTCTTCTTCTTGGGATTCACCAAGGTAGGATTGATTCTATATGGTTAGATGAGACACTTATTATTATTCGGGATGTTCTCAACGAGGATATGCGTTATATGTATTCTGTAGCTATGAGTTCGGCCACAACGGGAGAACCAGAGCTCGAGACAATGGCAATGGTCTCCTTGAACCTCCGCACTGGCCCAAATCCAAAGCTGCTTCAAGTCTGTTGCAGAAAGAAAGAGAGGAGCAGAGATAACTATGACCCCTACAAAGTCATCGAAATTACGCCTCCGCCCAAGAACCTCGGCGTTCGTTGCTTTCCCTCTAACATGCAATGTGGGGAGATTGTGACAATAGAAAGCCAAACTTACACAATCTCGGCTGTAACTCATAGGTACCAGCTTCGGAAGGGGAAGTATGAACCGAGCGAGAAGAGGCTCGATGTCTTGTCCACAGCGAGATACGTCTTGAATATATACTTGGATAATTTACTAGAACAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

38.06

Weight (kDa)

8.89

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40500 AT5G40500
fragaria_vesca FvH4_6g51480 FvH4_6g51480
malus_domestica MD17G1026500.v1.1
prunus_persica Prupe.3G292200_v2.0.a1
pyrus_communis pycom17g02160
rosa_chinensis RchiOBHm_Chr2g0173121
rosa_laevigata RLG00000022160
rosa_roxburghii Rroxscaffold_2G00079220
rosa_rugosa Rorug02G0565500
rosa_samantha Rh2AG645500 Rh2BG656200 Rh2CG621300 Rh2DG669600
rosa_wichuraiana Rw2G053010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 888
AccB1I GGYRCC 1 cut(s) 888
AccBSI CCGCTC 1 cut(s) 506
AciI CCGC 6 cut(s) 11, 130, 474, 506, 685, 785
AclWI GGATC 1 cut(s) 189
AcoI YGGCCR 1 cut(s) 630
AfaI GTAC 1 cut(s) 890
AfiI CCNNNNNNNGG 3 cut(s) 386, 387, 450
AgsI TTSAA 8 cut(s) 20, 53, 251, 329, 402, 679, 713, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 956, 988
AluBI AGCT 7 cut(s) 23, 227, 309, 620, 652, 706, 895
AluI AGCT 7 cut(s) 23, 227, 309, 620, 652, 706, 895
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 3 cut(s) 554, 650, 676
AlwI GGATC 1 cut(s) 189
Ama87I CYCGRG 2 cut(s) 299, 653
AoxI GGCC 4 cut(s) 407, 452, 630, 691
ApeKI GCWGC 2 cut(s) 440, 706
Asp718I GGTACC 1 cut(s) 888
AspS9I GGNCC 2 cut(s) 407, 692
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 4 cut(s) 25, 122, 128, 518
AvaI CYCGRG 2 cut(s) 299, 653
BanI GGYRCC 1 cut(s) 888
BanII GRGCYC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 452, 693
BccI CCATC 1 cut(s) 170
BceAI ACGGC 2 cut(s) 394, 439
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 3 cut(s) 554, 650, 676
BfaI CTAG 3 cut(s) 224, 273, 986
BfmI CTRYAG 1 cut(s) 615
BisI GCNGC 3 cut(s) 441, 507, 707
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 3 cut(s) 442, 508, 708
Bme1390I CCNGG 1 cut(s) 381
BmeT110I CYCGRG 2 cut(s) 299, 653
BmgT120I GGNCC 2 cut(s) 407, 692
BmiI GGNNCC 1 cut(s) 890
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 2 cut(s) 69, 347
Bpu10I CCTNAGC 1 cut(s) 445
Bpu1102I GCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 676
BsaJI CCNNGG 4 cut(s) 300, 410, 529, 796
BsaWI WCCGGW 1 cut(s) 138
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 387, 450
Bse1I ACTGG 1 cut(s) 694
Bse3DI GCAATG 2 cut(s) 672, 833
Bse8I GATNNNNATC 1 cut(s) 180
BseDI CCNNGG 4 cut(s) 300, 410, 529, 796
BseGI GGATG 2 cut(s) 253, 586
BseJI GATNNNNATC 1 cut(s) 180
BseLI CCNNNNNNNGG 3 cut(s) 386, 387, 450
BseMI GCAATG 2 cut(s) 672, 833
BseNI ACTGG 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 751
BseXI GCAGC 2 cut(s) 452, 693
BshFI GGCC 4 cut(s) 409, 454, 632, 693
BshNI GGYRCC 1 cut(s) 888
BsiHKAI GWGCWC 1 cut(s) 654
BsiHKCI CYCGRG 2 cut(s) 299, 653
BsiSI CCGG 2 cut(s) 139, 381
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 3 cut(s) 386, 387, 450
BsmAI GTCTC 3 cut(s) 554, 650, 676
BsmFI GGGAC 1 cut(s) 363
BsnI GGCC 4 cut(s) 409, 454, 632, 693
Bso31I GGTCTC 1 cut(s) 676
BsoBI CYCGRG 2 cut(s) 299, 653
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 1 cut(s) 181
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 6 cut(s) 11, 130, 474, 506, 685, 785
BspANI GGCC 4 cut(s) 409, 454, 632, 693
BspLI GGNNCC 1 cut(s) 890
BspPI GGATC 1 cut(s) 189
BspQI GCTCTTC 2 cut(s) 270, 516
BspT107I GGYRCC 1 cut(s) 888
BspTNI GGTCTC 1 cut(s) 676
BsrBI CCGCTC 1 cut(s) 506
BsrDI GCAATG 2 cut(s) 672, 833
BsrI ACTGG 1 cut(s) 694
BssECI CCNNGG 4 cut(s) 300, 410, 529, 796
BssMI GATC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 529
Bst6I CTCTTC 3 cut(s) 270, 516, 920
BstDEI CTNAG 3 cut(s) 214, 228, 445
BstDSI CCRYGG 1 cut(s) 410
BstENI CCTNNNNNAGG 1 cut(s) 448
BstF5I GGATG 2 cut(s) 253, 586
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 3 cut(s) 554, 650, 676
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 7 cut(s) 224, 238, 371, 446, 473, 503, 807
BstNSI RCATGY 3 cut(s) 202, 501, 826
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 452, 693
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 4 cut(s) 409, 454, 632, 693
BtgI CCRYGG 1 cut(s) 410
BtsCI GGATG 2 cut(s) 253, 586
BtsIMutI CAGTG 1 cut(s) 687
Cfr13I GGNCC 2 cut(s) 407, 692
Csp6I GTAC 1 cut(s) 889
CviAII CATG 6 cut(s) 147, 199, 203, 348, 498, 823
CviQI GTAC 1 cut(s) 889
DdeI CTNAG 3 cut(s) 214, 228, 445
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 3 cut(s) 270, 516, 920
EarI CTCTTC 3 cut(s) 270, 516, 920
EciI GGCGGA 2 cut(s) 145, 774
Ecl136II GAGCTC 1 cut(s) 652
Eco130I CCWWGG 1 cut(s) 529
Eco24I GRGCYC 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 676
Eco53kI GAGCTC 1 cut(s) 652
Eco88I CYCGRG 2 cut(s) 299, 653
EcoICRI GAGCTC 1 cut(s) 652
EcoNI CCTNNNNNAGG 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 529
EcoT22I ATGCAT 2 cut(s) 84, 204
EcoT38I GRGCYC 1 cut(s) 654
ErhI CCWWGG 1 cut(s) 529
FaeI CATG 6 cut(s) 150, 202, 206, 351, 501, 826
FalI AAGNNNNNCTT 2 cut(s) 844, 876
FaqI GGGAC 1 cut(s) 363
FatI CATG 6 cut(s) 146, 198, 202, 347, 497, 822
FauNDI CATATG 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 441, 507, 707
FokI GGATG 2 cut(s) 240, 593
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 3 cut(s) 441, 507, 707
FspBI CTAG 3 cut(s) 224, 273, 986
GluI GCNGC 3 cut(s) 441, 507, 707
HaeIII GGCC 4 cut(s) 409, 454, 632, 693
HapII CCGG 2 cut(s) 139, 381
Hin1II CATG 6 cut(s) 150, 202, 206, 351, 501, 826
HinfI GANTC 6 cut(s) 16, 113, 133, 244, 523, 542
HpaII CCGG 2 cut(s) 139, 381
HphI GGTGA 4 cut(s) 25, 122, 128, 518
Hpy166II GTNNAC 1 cut(s) 945
Hpy188I TCNGA 3 cut(s) 118, 258, 900
Hpy188III TCNNGA 4 cut(s) 299, 578, 655, 961
Hpy8I GTNNAC 1 cut(s) 945
HpyAV CCTTC 3 cut(s) 253, 364, 895
HpyCH4IV ACGT 1 cut(s) 957
HpyCH4V TGCA 8 cut(s) 82, 146, 162, 202, 440, 481, 723, 826
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 238, 371, 446, 473, 503, 807
HpyF3I CTNAG 3 cut(s) 214, 228, 445
HpySE526I ACGT 1 cut(s) 957
Hsp92II CATG 6 cut(s) 150, 202, 206, 351, 501, 826
KpnI GGTACC 1 cut(s) 892
Kzo9I GATC 1 cut(s) 181
LguI GCTCTTC 2 cut(s) 270, 516
LmnI GCTCC 1 cut(s) 738
LpnPI CCDG 5 cut(s) 152, 394, 660, 675, 905
Lsp1109I GCAGC 2 cut(s) 452, 693
LweI GCATC 2 cut(s) 69, 347
MaeI CTAG 3 cut(s) 224, 273, 986
MaeII ACGT 1 cut(s) 957
MaeIII GTNAC 4 cut(s) 110, 219, 841, 877
MalI GATC 1 cut(s) 183
MbiI CCGCTC 1 cut(s) 506
MboI GATC 1 cut(s) 181
MboII GAAGA 5 cut(s) 239, 257, 503, 506, 937
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 4 cut(s) 43, 98, 774, 979
MlyI GAGTC 1 cut(s) 107
Mph1103I ATGCAT 2 cut(s) 84, 204
MseI TTAA 3 cut(s) 6, 210, 997
MslI CAYNNNNRTG 1 cut(s) 346
MspI CCGG 2 cut(s) 139, 381
MspR9I CCNGG 1 cut(s) 381
MwoI GCNNNNNNNGC 7 cut(s) 224, 238, 371, 446, 473, 503, 807
NciI CCSGG 1 cut(s) 381
NdeI CATATG 1 cut(s) 483
NdeII GATC 1 cut(s) 181
NlaIII CATG 6 cut(s) 150, 202, 206, 351, 501, 826
NlaIV GGNNCC 1 cut(s) 890
NmeAIII GCCGAG 2 cut(s) 777, 851
NmuCI GTSAC 2 cut(s) 110, 841
NsiI ATGCAT 2 cut(s) 84, 204
NspI RCATGY 3 cut(s) 202, 501, 826
PaeR7I CTCGAG 1 cut(s) 653
PciSI GCTCTTC 2 cut(s) 270, 516
PfeI GAWTC 5 cut(s) 16, 133, 244, 523, 542
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 3 cut(s) 442, 508, 708
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 654
PspN4I GGNNCC 1 cut(s) 890
PspPI GGNCC 2 cut(s) 407, 692
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 1 cut(s) 890
RsaNI GTAC 1 cut(s) 889
RseI CAYNNNNRTG 1 cut(s) 346
SacI GAGCTC 1 cut(s) 654
SapI GCTCTTC 2 cut(s) 270, 516
SaqAI TTAA 3 cut(s) 6, 210, 997
SatI GCNGC 3 cut(s) 441, 507, 707
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 2 cut(s) 407, 692
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 654
SfaNI GCATC 2 cut(s) 69, 347
SfcI CTRYAG 1 cut(s) 615
Sfr274I CTCGAG 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
Sse9I AATT 4 cut(s) 43, 98, 774, 979
SsiI CCGC 6 cut(s) 11, 130, 474, 506, 685, 785
SspMI CTAG 3 cut(s) 224, 273, 986
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 1 cut(s) 529
TaiI ACGT 1 cut(s) 960
TaqI TCGA 3 cut(s) 654, 771, 933
TasI AATT 4 cut(s) 43, 98, 774, 979
TauI GCSGC 1 cut(s) 509
TfiI GAWTC 5 cut(s) 16, 133, 244, 523, 542
Tru1I TTAA 3 cut(s) 6, 210, 997
Tru9I TTAA 3 cut(s) 6, 210, 997
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 2 cut(s) 110, 841
TseI GCWGC 2 cut(s) 440, 706
Tsp45I GTSAC 2 cut(s) 110, 841
TspDTI ATGAA 3 cut(s) 56, 182, 927
TspRI CASTG 1 cut(s) 694
XagI CCTNNNNNAGG 1 cut(s) 448
XceI RCATGY 3 cut(s) 202, 501, 826
XhoI CTCGAG 1 cut(s) 653
XspI CTAG 3 cut(s) 224, 273, 986
Zsp2I ATGCAT 2 cut(s) 84, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.