RLG00000022160

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
81433808 .. 81435924
2117 bp
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UTR
Exon/CDS
Intron
RLM00000022160

Sequence Viewer

Length: 339 bp
ATGGCAATGGTCTCCTTGAACCTCCGCACTGGCCCAAATCCAAAGATGCTTCAAGTCTGTTGCAGAAAGAAAGAGAGGAGCAGAGATAACTATGACCCCTACAAAGTCATCGAAATTACGCCTCCGCCCAAGAACCTCGGCGTTCGTTGCTTTCCCTCTAACATGCAATGTGGGGAGATTGTGACAATAGAAAGCCAAACTTACACAATCTCGGCTGTAACTCATAGGTACCAGCTTCGGAAGGGGAAGTATGAACCGAGCGAGAAGAGGCTCGATGTCTTGTCCACAGCGAGATACGTCTTGAATATATACTTGGATAATTTACTAGAACAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.96

Weight (kDa)

9.27

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015478)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40500 AT5G40500
fragaria_vesca FvH4_6g51480 FvH4_6g51480
malus_domestica MD17G1026500.v1.1
prunus_persica Prupe.3G292200_v2.0.a1
pyrus_communis pycom17g02160
rosa_chinensis RchiOBHm_Chr2g0173121
rosa_laevigata RLG00000022160
rosa_roxburghii Rroxscaffold_2G00079220
rosa_rugosa Rorug02G0565500
rosa_samantha Rh2AG645500 Rh2BG656200 Rh2CG621300 Rh2DG669600
rosa_wichuraiana Rw2G053010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 228
AccB1I GGYRCC 1 cut(s) 228
AciI CCGC 2 cut(s) 25, 125
AfaI GTAC 1 cut(s) 230
AgsI TTSAA 3 cut(s) 19, 53, 304
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 16
AoxI GGCC 1 cut(s) 31
Asp718I GGTACC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 230
BmsI GCATC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 34
Bse3DI GCAATG 2 cut(s) 12, 173
BseDI CCNNGG 1 cut(s) 136
BseMI GCAATG 2 cut(s) 12, 173
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 91
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 16
BsnI GGCC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 16
BspACI CCGC 2 cut(s) 25, 125
BspANI GGCC 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 228
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 2 cut(s) 12, 173
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 260
BstMAI GTCTC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNSI RCATGY 1 cut(s) 166
BsuRI GGCC 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 229
CviAII CATG 1 cut(s) 163
CviJI RGCY 5 cut(s) 33, 195, 215, 235, 271
CviKI_1 RGCY 5 cut(s) 33, 195, 215, 235, 271
CviQI GTAC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 16
FaeI CATG 1 cut(s) 166
FaiI YATR 6 cut(s) 93, 164, 225, 252, 308, 310
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FatI CATG 1 cut(s) 162
FspBI CTAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 33
Hin1II CATG 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 63, 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 166
KpnI GGTACC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 2 cut(s) 15, 245
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 181, 217
MboII GAAGA 1 cut(s) 277
MluCI AATT 2 cut(s) 114, 319
MnlI CCTC 6 cut(s) 32, 69, 132, 146, 166, 261
MseI TTAA 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 147
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 230
NmeAIII GCCGAG 2 cut(s) 117, 191
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 32
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 32
SetI ASST 5 cut(s) 24, 138, 230, 237, 300
SfaNI GCATC 1 cut(s) 36
Sse9I AATT 2 cut(s) 114, 319
SsiI CCGC 2 cut(s) 25, 125
SspMI CTAG 1 cut(s) 326
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 111, 273
TasI AATT 2 cut(s) 114, 319
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 34
XceI RCATGY 1 cut(s) 166
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.