FvH4_6g53740

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0019562
Physical Location & Seq
Forward (+)
39331014 .. 39332268
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53740.t1

Sequence Viewer

Length: 381 bp
ATGTTTCCGAACTCCATCACCCTCGTCCTTGCTGGTAATTGGAATAGCAGCCCCGGTGACAAGAGAATGAACAAGACCACTGCAACAACGACCGGCCCCCAATCAGCACTCATCTTTCTCTCTGCTCTCACTCTGCTTACAAAATGGAGAGTGGTAGGGGAAATGGCAGATTGGGGTCCGGTGTTGATAGCGGTGGCGCTCTTCGTACTGTTAACTCCAGGGTTGCTGTTTCAGCTGCCCGGGAAGAGCCGAGTGGTGGAGTTCAACAACATGCAGACTAGCGGGGTTTCCATTTTGGTGCACACCATCATTTACTTTGGACTCATCACCATCTTTCTCATAGCTATTGGTGTTCACATCTACACTGGCGGCGGCGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

127

Amino Acids

13.55

Weight (kDa)

9.3

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 55 - 121 7.2e-36 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53740
malus_domestica MD09G1009200.v1.1 MD17G1001200.v1.1
prunus_persica Prupe.3G307700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0175821
rosa_laevigata RLG00000022358
rosa_wichuraiana Rw2G054690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 191, 282, 369, 372
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 217
AluBI AGCT 2 cut(s) 235, 344
AluI AGCT 2 cut(s) 235, 344
Alw21I GWGCWC 1 cut(s) 303
Alw44I GTGCAC 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 1 cut(s) 94
ApaLI GTGCAC 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 48, 235
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 95, 176
AsuC2I CCSGG 3 cut(s) 54, 240, 241
AsuHPI GGTGA 3 cut(s) 10, 68, 319
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 60, 222
BccI CCATC 3 cut(s) 23, 314, 338
BciT130I CCWGG 1 cut(s) 219
BcnI CCSGG 3 cut(s) 54, 240, 241
BfaI CTAG 2 cut(s) 279, 379
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 4 cut(s) 49, 236, 370, 373
BlsI GCNGC 4 cut(s) 50, 237, 371, 374
Bme1390I CCNGG 4 cut(s) 54, 219, 240, 241
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 95, 176
BmiI GGNNCC 2 cut(s) 97, 177
BmrFI CCNGG 4 cut(s) 54, 219, 240, 241
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 3 cut(s) 54, 240, 241
BsaJI CCNNGG 3 cut(s) 52, 218, 239
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 52, 218, 239
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 2 cut(s) 60, 222
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 4 cut(s) 54, 93, 179, 240
BslI CCNNNNNNNGG 1 cut(s) 256
BsnI GGCC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 303
BspACI CCGC 4 cut(s) 191, 282, 369, 372
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 97, 177
BspQI GCTCTTC 2 cut(s) 206, 239
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 3 cut(s) 52, 218, 239
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 2 cut(s) 206, 239
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 4 cut(s) 52, 217, 238, 239
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 60, 222
BsuRI GGCC 1 cut(s) 96
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 363
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 95, 176
Cfr9I CCCGGG 1 cut(s) 239
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 271
CviJI RGCY 5 cut(s) 51, 96, 235, 249, 344
CviKI_1 RGCY 5 cut(s) 51, 96, 235, 249, 344
CviQI GTAC 1 cut(s) 206
Eam1104I CTCTTC 2 cut(s) 206, 239
EarI CTCTTC 2 cut(s) 206, 239
Eco47I GGWCC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 274
FaiI YATR 2 cut(s) 272, 341
FatI CATG 1 cut(s) 270
FauI CCCGC 1 cut(s) 275
Fnu4HI GCNGC 4 cut(s) 49, 236, 370, 373
Fsp4HI GCNGC 4 cut(s) 49, 236, 370, 373
FspBI CTAG 2 cut(s) 279, 379
GlaI GCGC 1 cut(s) 198
GluI GCNGC 4 cut(s) 49, 236, 370, 373
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 200
HaeIII GGCC 1 cut(s) 96
HapII CCGG 4 cut(s) 54, 93, 179, 240
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 1 cut(s) 321
HpaI GTTAAC 1 cut(s) 213
HpaII CCGG 4 cut(s) 54, 93, 179, 240
HphI GGTGA 3 cut(s) 10, 68, 319
Hpy166II GTNNAC 3 cut(s) 213, 301, 355
Hpy188I TCNGA 1 cut(s) 9
Hpy8I GTNNAC 3 cut(s) 213, 301, 355
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 83, 274, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 1 cut(s) 197
KspAI GTTAAC 1 cut(s) 213
LguI GCTCTTC 2 cut(s) 206, 239
LpnPI CCDG 8 cut(s) 18, 67, 106, 192, 204, 231, 253, 351
Lsp1109I GCAGC 2 cut(s) 60, 222
MaeI CTAG 2 cut(s) 279, 379
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 2 cut(s) 193, 256
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 1 cut(s) 37
MlyI GAGTC 1 cut(s) 315
MnlI CCTC 1 cut(s) 32
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 4 cut(s) 54, 93, 179, 240
MspR9I CCNGG 4 cut(s) 54, 219, 240, 241
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 232
NciI CCSGG 3 cut(s) 54, 240, 241
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 2 cut(s) 97, 177
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 274
PciSI GCTCTTC 2 cut(s) 206, 239
PkrI GCNGC 4 cut(s) 50, 237, 371, 374
PleI GAGTC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 97, 177
PspPI GGNCC 2 cut(s) 95, 176
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 296
SapI GCTCTTC 2 cut(s) 206, 239
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 4 cut(s) 49, 236, 370, 373
Sau96I GGNCC 2 cut(s) 95, 176
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 4 cut(s) 54, 219, 240, 241
SduI GDGCHC 1 cut(s) 303
SetI ASST 2 cut(s) 237, 346
SinI GGWCC 1 cut(s) 176
SmaI CCCGGG 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 1 cut(s) 37
SsiI CCGC 4 cut(s) 191, 282, 369, 372
SspMI CTAG 2 cut(s) 279, 379
StyD4I CCNGG 4 cut(s) 52, 217, 238, 239
TaaI ACNGT 1 cut(s) 210
TasI AATT 1 cut(s) 37
TauI GCSGC 2 cut(s) 372, 375
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 2 cut(s) 85, 370
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 48, 235
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 83
TspMI CCCGGG 1 cut(s) 239
TspRI CASTG 2 cut(s) 85, 370
VneI GTGCAC 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 176
XceI RCATGY 1 cut(s) 274
XmaI CCCGGG 1 cut(s) 239
XspI CTAG 2 cut(s) 279, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.