MD09G1009200.v1.1

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0019562
Physical Location & Seq
Reverse (-)
664531 .. 664740
210 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1009200.v1.1.491

Sequence Viewer

Length: 210 bp
ATGGCGGATTGGGGGCCAGTTGTGATAGCGGTGGTGCTGTTTGTGTTGTTGACGCCGGGGCTGCTGTTTCAGCTGCCGGGGAACAGCCGGGTGGCGGAGTTCAACAACATGCAGACCAGCGGGGTTTCCATCTTGGTTCACACCATCATTTACTTTGGCCTCATCACCATTTTCCTCATCGCCATCGGCGTTCACATCTCCACTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

70

Amino Acids

7.4

Weight (kDa)

5.95

Isoelectric Point (pI)

21.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 66 7.6e-36 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53740
malus_domestica MD09G1009200.v1.1 MD17G1001200.v1.1
prunus_persica Prupe.3G307700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0175821
rosa_laevigata RLG00000022358
rosa_wichuraiana Rw2G054690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 29, 95, 120
AcyI GRCGYC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AoxI GGCC 2 cut(s) 14, 157
ApeKI GCWGC 2 cut(s) 61, 73
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 3 cut(s) 57, 78, 89
AsuHPI GGTGA 1 cut(s) 157
BbvI GCAGC 2 cut(s) 48, 60
BccI CCATC 3 cut(s) 137, 152, 191
BcnI CCSGG 3 cut(s) 57, 78, 89
BfaI CTAG 1 cut(s) 208
BisI GCNGC 2 cut(s) 62, 74
BlsI GCNGC 2 cut(s) 63, 75
Bme1390I CCNGG 3 cut(s) 57, 78, 89
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 3 cut(s) 57, 78, 89
BpuMI CCSGG 3 cut(s) 57, 78, 89
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 56, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 17, 208
BseDI CCNNGG 2 cut(s) 56, 77
BseLI CCNNNNNNNGG 1 cut(s) 94
BseNI ACTGG 2 cut(s) 17, 208
BseXI GCAGC 2 cut(s) 48, 60
BshFI GGCC 2 cut(s) 16, 159
BsiSI CCGG 3 cut(s) 56, 77, 88
BslI CCNNNNNNNGG 1 cut(s) 94
BsnI GGCC 2 cut(s) 16, 159
BspACI CCGC 4 cut(s) 5, 29, 95, 120
BspANI GGCC 2 cut(s) 16, 159
BspLI GGNNCC 1 cut(s) 15
BsrI ACTGG 2 cut(s) 17, 208
BssECI CCNNGG 2 cut(s) 56, 77
BssNI GRCGYC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 61, 70
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 3 cut(s) 55, 76, 87
BstV1I GCAGC 2 cut(s) 48, 60
BsuRI GGCC 2 cut(s) 16, 159
BtgZI GCGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 1 cut(s) 61
CviAII CATG 1 cut(s) 109
CviJI RGCY 6 cut(s) 16, 61, 73, 87, 159, 207
CviKI_1 RGCY 6 cut(s) 16, 61, 73, 87, 159, 207
EciI GGCGGA 2 cut(s) 20, 110
FaeI CATG 1 cut(s) 112
FaiI YATR 1 cut(s) 110
FatI CATG 1 cut(s) 108
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 62, 74
Fsp4HI GCNGC 2 cut(s) 62, 74
FspBI CTAG 1 cut(s) 208
GluI GCNGC 2 cut(s) 62, 74
HaeIII GGCC 2 cut(s) 16, 159
HapII CCGG 3 cut(s) 56, 77, 88
HgaI GACGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 1 cut(s) 112
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HpaII CCGG 3 cut(s) 56, 77, 88
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 51, 139, 193
Hpy8I GTNNAC 3 cut(s) 51, 139, 193
HpyCH4V TGCA 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 70
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 1 cut(s) 112
LpnPI CCDG 6 cut(s) 30, 69, 90, 101, 130, 189
Lsp1109I GCAGC 2 cut(s) 48, 60
MaeI CTAG 1 cut(s) 208
MnlI CCTC 2 cut(s) 170, 185
MspA1I CMGCKG 2 cut(s) 73, 120
MspI CCGG 3 cut(s) 56, 77, 88
MspR9I CCNGG 3 cut(s) 57, 78, 89
MwoI GCNNNNNNNGC 2 cut(s) 61, 70
NciI CCSGG 3 cut(s) 57, 78, 89
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 15
NspI RCATGY 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PkrI GCNGC 2 cut(s) 63, 75
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 73
SatI GCNGC 2 cut(s) 62, 74
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 57, 78, 89
SetI ASST 1 cut(s) 75
SsiI CCGC 4 cut(s) 5, 29, 95, 120
SspMI CTAG 1 cut(s) 208
StyD4I CCNGG 3 cut(s) 55, 76, 87
TscAI CASTG 1 cut(s) 208
TseI GCWGC 2 cut(s) 61, 73
TspRI CASTG 1 cut(s) 208
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.