Rw2G054690

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0019562
Physical Location & Seq
Forward (+)
82249909 .. 82250326
418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G054690.1

Sequence Viewer

Length: 219 bp
ATGGCGGATTGGGGGCCGGTGTTGATAGCGGTGGTGCTGTTCGTACTGTTAACTCCAGGACTGCTGTTTCAGCTACCCGGGAACAGCCGAGTGGTGGAGTTTAACAACATGCAGACGAGTGGAGTTTCCATTTTGGTGCACACCATCATTTACTTTGCACTCATCACCGTCTTTCTCATAGCTATTGGTGTTCACATCTACACGGGCGGCGGCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

72

Amino Acids

7.69

Weight (kDa)

5.95

Isoelectric Point (pI)

25.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 1.2e-36 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53740
malus_domestica MD09G1009200.v1.1 MD17G1001200.v1.1
prunus_persica Prupe.3G307700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0175821
rosa_laevigata RLG00000022358
rosa_wichuraiana Rw2G054690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 5, 29, 207, 210, 213
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 94
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 2 cut(s) 73, 182
AluI AGCT 2 cut(s) 73, 182
Alw21I GWGCWC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 14
ApaLI GTGCAC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 78, 79
AsuHPI GGTGA 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 2 cut(s) 78, 79
BfaI CTAG 1 cut(s) 217
BisI GCNGC 3 cut(s) 208, 211, 214
BlsI GCNGC 3 cut(s) 209, 212, 215
Bme1390I CCNGG 3 cut(s) 57, 78, 79
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 3 cut(s) 57, 78, 79
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 78, 79
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 16
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 141
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 2 cut(s) 17, 78
BslI CCNNNNNNNGG 1 cut(s) 94
BsnI GGCC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 141
BspACI CCGC 5 cut(s) 5, 29, 207, 210, 213
BspANI GGCC 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 48, 169
BstMWI GCNNNNNNNGC 2 cut(s) 70, 213
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 112
BstSCI CCNGG 3 cut(s) 55, 76, 77
BstSLI GKGCMC 1 cut(s) 141
BsuRI GGCC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 14
Cfr9I CCCGGG 1 cut(s) 77
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 109
CviJI RGCY 5 cut(s) 16, 73, 87, 182, 216
CviKI_1 RGCY 5 cut(s) 16, 73, 87, 182, 216
CviQI GTAC 1 cut(s) 44
EciI GGCGGA 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 55
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 110, 179
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 208, 211, 214
Fsp4HI GCNGC 3 cut(s) 208, 211, 214
FspBI CTAG 1 cut(s) 217
GluI GCNGC 3 cut(s) 208, 211, 214
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 16
HapII CCGG 2 cut(s) 17, 78
Hin1II CATG 1 cut(s) 112
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HpaI GTTAAC 1 cut(s) 51
HpaII CCGG 2 cut(s) 17, 78
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 51, 139, 193
Hpy8I GTNNAC 3 cut(s) 51, 139, 193
HpyCH4III ACNGT 2 cut(s) 48, 169
HpyCH4V TGCA 3 cut(s) 112, 139, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 213
Hsp92II CATG 1 cut(s) 112
KspAI GTTAAC 1 cut(s) 51
LpnPI CCDG 4 cut(s) 30, 42, 69, 91
MaeI CTAG 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 141
MseI TTAA 2 cut(s) 50, 102
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 2 cut(s) 17, 78
MspR9I CCNGG 3 cut(s) 57, 78, 79
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 70, 213
NciI CCSGG 2 cut(s) 78, 79
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 1 cut(s) 113
NspI RCATGY 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 3 cut(s) 209, 212, 215
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 14
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 50, 102
SatI GCNGC 3 cut(s) 208, 211, 214
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 57, 78, 79
SduI GDGCHC 1 cut(s) 141
SetI ASST 2 cut(s) 75, 184
SmaI CCCGGG 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 134
SsiI CCGC 5 cut(s) 5, 29, 207, 210, 213
SspMI CTAG 1 cut(s) 217
StyD4I CCNGG 3 cut(s) 55, 76, 77
TaaI ACNGT 2 cut(s) 48, 169
TauI GCSGC 3 cut(s) 210, 213, 216
Tru1I TTAA 2 cut(s) 50, 102
Tru9I TTAA 2 cut(s) 50, 102
TspMI CCCGGG 1 cut(s) 77
VneI GTGCAC 1 cut(s) 137
XceI RCATGY 1 cut(s) 112
XmaI CCCGGG 1 cut(s) 77
XspI CTAG 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.