Basic Information
Type: gene
Physical Location & Seq
Forward (+)
46409 .. 46618
MD17G1001200.v1.1.491
Length: 210 bp
ATGGCGGATTGGGGGCCGGTTGTGATAGCGGTGGTGCTGTTCGTGTTGTTGACGCCGGGGCTTCTGTTTCAGCTCCCCGGGAACAGCCGGGTGGTGGAGTTCAACAACATGCAGACCAGCGGGGTTTCCATCTTGGTTCACACAATCATTTACTTCGGACTCATCACCATATTCCTCATCGCTATCGGCGTTCACATCTACTTGGGCTAG
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Protein Analysis
5.95
Isoelectric Point (pI)
| Domain Name |
Pfam ID |
Position |
E-value |
Description |
| DUF3339 |
PF11820 |
1 - 67 |
7.3e-37 |
Protein of unknown function (DUF3339) |
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...
Gene Family Tree
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Publication-ready
Orthologous Genes
(Group: OG0019562)
Restriction Enzyme Sites
| Enzyme |
Recognition Site |
Cut Count |
Positions (bp) |
| AciI |
CCGC |
3 cut(s)
|
5, 29, 120 |
| AcyI |
GRCGYC |
1 cut(s)
|
53 |
| AfiI |
CCNNNNNNNGG |
1 cut(s)
|
94 |
| AgsI |
TTSAA |
1 cut(s)
|
103 |
| AluBI |
AGCT |
1 cut(s)
|
73 |
| AluI |
AGCT |
1 cut(s)
|
73 |
| Ama87I |
CYCGRG |
1 cut(s)
|
77 |
| AoxI |
GGCC |
1 cut(s)
|
14 |
| AspS9I |
GGNCC |
1 cut(s)
|
14 |
| AsuC2I |
CCSGG |
4 cut(s)
|
57, 78, 79, 89 |
| AsuHPI |
GGTGA |
1 cut(s)
|
157 |
| AvaI |
CYCGRG |
1 cut(s)
|
77 |
| BccI |
CCATC |
1 cut(s)
|
137 |
| BcnI |
CCSGG |
4 cut(s)
|
57, 78, 79, 89 |
| BfaI |
CTAG |
1 cut(s)
|
208 |
| Bme1390I |
CCNGG |
4 cut(s)
|
57, 78, 79, 89 |
| BmeT110I |
CYCGRG |
1 cut(s)
|
77 |
| BmgT120I |
GGNCC |
1 cut(s)
|
14 |
| BmiI |
GGNNCC |
1 cut(s)
|
15 |
| BmrFI |
CCNGG |
4 cut(s)
|
57, 78, 79, 89 |
| BpuMI |
CCSGG |
4 cut(s)
|
57, 78, 79, 89 |
| BsaHI |
GRCGYC |
1 cut(s)
|
53 |
| BsaJI |
CCNNGG |
3 cut(s)
|
56, 76, 77 |
| Bsc4I |
CCNNNNNNNGG |
1 cut(s)
|
94 |
| Bse118I |
RCCGGY |
1 cut(s)
|
16 |
| BseDI |
CCNNGG |
3 cut(s)
|
56, 76, 77 |
| BseLI |
CCNNNNNNNGG |
1 cut(s)
|
94 |
| BshFI |
GGCC |
1 cut(s)
|
16 |
| BsiHKCI |
CYCGRG |
1 cut(s)
|
77 |
| BsiSI |
CCGG |
4 cut(s)
|
17, 56, 78, 88 |
| BslI |
CCNNNNNNNGG |
1 cut(s)
|
94 |
| BsnI |
GGCC |
1 cut(s)
|
16 |
| BsoBI |
CYCGRG |
1 cut(s)
|
77 |
| BspACI |
CCGC |
3 cut(s)
|
5, 29, 120 |
| BspANI |
GGCC |
1 cut(s)
|
16 |
| BspLI |
GGNNCC |
1 cut(s)
|
15 |
| BsrFI |
RCCGGY |
1 cut(s)
|
16 |
| BssAI |
RCCGGY |
1 cut(s)
|
16 |
| BssECI |
CCNNGG |
3 cut(s)
|
56, 76, 77 |
| BssNI |
GRCGYC |
1 cut(s)
|
53 |
| BstACI |
GRCGYC |
1 cut(s)
|
53 |
| BstNSI |
RCATGY |
1 cut(s)
|
112 |
| BstSCI |
CCNGG |
4 cut(s)
|
55, 76, 77, 87 |
| BsuRI |
GGCC |
1 cut(s)
|
16 |
| BtgZI |
GCGATG |
1 cut(s)
|
163 |
| Cfr10I |
RCCGGY |
1 cut(s)
|
16 |
| Cfr13I |
GGNCC |
1 cut(s)
|
14 |
| Cfr9I |
CCCGGG |
1 cut(s)
|
77 |
| CseI |
GACGC |
1 cut(s)
|
61 |
| CviAII |
CATG |
1 cut(s)
|
109 |
| CviJI |
RGCY |
5 cut(s)
|
16, 61, 73, 87, 207 |
| CviKI_1 |
RGCY |
5 cut(s)
|
16, 61, 73, 87, 207 |
| EciI |
GGCGGA |
1 cut(s)
|
20 |
| Eco88I |
CYCGRG |
1 cut(s)
|
77 |
| FaeI |
CATG |
1 cut(s)
|
112 |
| FaiI |
YATR |
2 cut(s)
|
110, 170 |
| FatI |
CATG |
1 cut(s)
|
108 |
| FauI |
CCCGC |
1 cut(s)
|
113 |
| FspBI |
CTAG |
1 cut(s)
|
208 |
| HaeIII |
GGCC |
1 cut(s)
|
16 |
| HapII |
CCGG |
4 cut(s)
|
17, 56, 78, 88 |
| HgaI |
GACGC |
1 cut(s)
|
61 |
| Hin1I |
GRCGYC |
1 cut(s)
|
53 |
| Hin1II |
CATG |
1 cut(s)
|
112 |
| HincII |
GTYRAC |
1 cut(s)
|
51 |
| HindII |
GTYRAC |
1 cut(s)
|
51 |
| HinfI |
GANTC |
1 cut(s)
|
159 |
| HpaII |
CCGG |
4 cut(s)
|
17, 56, 78, 88 |
| HphI |
GGTGA |
1 cut(s)
|
157 |
| Hpy166II |
GTNNAC |
3 cut(s)
|
51, 139, 193 |
| Hpy188I |
TCNGA |
1 cut(s)
|
158 |
| Hpy8I |
GTNNAC |
3 cut(s)
|
51, 139, 193 |
| HpyCH4V |
TGCA |
1 cut(s)
|
112 |
| Hsp92I |
GRCGYC |
1 cut(s)
|
53 |
| Hsp92II |
CATG |
1 cut(s)
|
112 |
| LmnI |
GCTCC |
1 cut(s)
|
78 |
| LpnPI |
CCDG |
5 cut(s)
|
30, 69, 91, 101, 130 |
| MaeI |
CTAG |
1 cut(s)
|
208 |
| MlyI |
GAGTC |
1 cut(s)
|
153 |
| MnlI |
CCTC |
1 cut(s)
|
185 |
| MspA1I |
CMGCKG |
1 cut(s)
|
120 |
| MspI |
CCGG |
4 cut(s)
|
17, 56, 78, 88 |
| MspR9I |
CCNGG |
4 cut(s)
|
57, 78, 79, 89 |
| NciI |
CCSGG |
4 cut(s)
|
57, 78, 79, 89 |
| NlaIII |
CATG |
1 cut(s)
|
112 |
| NlaIV |
GGNNCC |
1 cut(s)
|
15 |
| NspI |
RCATGY |
1 cut(s)
|
112 |
| PcsI |
WCGNNNNNNNCGW |
1 cut(s)
|
186 |
| PleI |
GAGTC |
1 cut(s)
|
153 |
| PpsI |
GAGTC |
1 cut(s)
|
153 |
| PspN4I |
GGNNCC |
1 cut(s)
|
15 |
| PspPI |
GGNCC |
1 cut(s)
|
14 |
| Sau96I |
GGNCC |
1 cut(s)
|
14 |
| SchI |
GAGTC |
1 cut(s)
|
153 |
| ScrFI |
CCNGG |
4 cut(s)
|
57, 78, 79, 89 |
| SetI |
ASST |
1 cut(s)
|
75 |
| SmaI |
CCCGGG |
1 cut(s)
|
79 |
| SsiI |
CCGC |
3 cut(s)
|
5, 29, 120 |
| SspMI |
CTAG |
1 cut(s)
|
208 |
| StyD4I |
CCNGG |
4 cut(s)
|
55, 76, 77, 87 |
| TspMI |
CCCGGG |
1 cut(s)
|
77 |
| XceI |
RCATGY |
1 cut(s)
|
112 |
| XmaI |
CCCGGG |
1 cut(s)
|
77 |
| XspI |
CTAG |
1 cut(s)
|
208 |
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.