FvH4_6g53750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016614
Physical Location & Seq
Reverse (-)
39347412 .. 39347825
414 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53750.t1

Sequence Viewer

Length: 414 bp
ATGGAGTCGAATCGCAAGCGCAAAGGGTTCATGAAGGGGAAGCTGATGCCATTCTATCGTGTGAATTCCAAACCTTCCTCAGTTTCATCTTCTGCTACAACTACCAGTACAACTAGCAAGCAGTCCAGCATGCATTACGTGATGAGCAGTAAGGTTAAACCCAGCCAGGCCTATCCTTTACCATCTTCAGTAGGGTTTCTGGTCCACAACCACAAGGACTATCATGTCATTGCAACTCAGGCTCAGGCTCAACCTAAACAGAAGATCACCTTCATAGTACCACCTTCTCATGCGGATCGCAAGCAGCAGCAGCAGCTCGATCAAAACCATGCTGGTGATGATATGGTTGATATGAAGGCGGCAACCTATATTTCATCAGTTCAAGAACGTTTCAAGCTTGAACGTAACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.43

Weight (kDa)

10.04

Isoelectric Point (pI)

62.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016614)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01960
fragaria_vesca FvH4_6g53750
prunus_persica Prupe.3G308000_v2.0.a1
pyrus_communis pycom17g00770
rosa_chinensis RchiOBHm_Chr2g0175871
rosa_laevigata RLG00000022361
rosa_multiflora Rmu_sc0003282.1_g000001
rosa_roxburghii Rroxscaffold_2G00076980
rosa_rugosa Rorug02G0588200
rosa_samantha Rh2AG667500 Rh2BG679000 Rh2CG641800 Rh2DG692500
rosa_wichuraiana Rw2G054710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AciI CCGC 2 cut(s) 293, 359
AclI AACGTT 1 cut(s) 388
AclWI GGATC 1 cut(s) 303
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 109, 279
AgsI TTSAA 3 cut(s) 383, 394, 401
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 3 cut(s) 43, 316, 397
AluI AGCT 3 cut(s) 43, 316, 397
AlwI GGATC 1 cut(s) 303
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 4 cut(s) 304, 307, 310, 313
ApoI RAATTY 1 cut(s) 64
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 259, 347
AvaII GGWCC 1 cut(s) 202
BbvI GCAGC 4 cut(s) 316, 319, 322, 325
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 114
BisI GCNGC 5 cut(s) 305, 308, 311, 314, 360
BlsI GCNGC 5 cut(s) 306, 309, 312, 315, 361
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 167
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 3 cut(s) 93, 251, 257
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 316, 319, 322, 325
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 170
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 264, 295, 319
BspACI CCGC 2 cut(s) 293, 359
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 3 cut(s) 92, 250, 256
BspHI TCATGA 1 cut(s) 30
BspPI GGATC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 1 cut(s) 105
BssMI GATC 3 cut(s) 264, 295, 319
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 17, 119, 131, 302
BstDEI CTNAG 3 cut(s) 79, 237, 243
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 267, 298, 322
BstMBI GATC 3 cut(s) 264, 295, 319
BstMWI GCNNNNNNNGC 3 cut(s) 239, 310, 313
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 165
BstV1I GCAGC 4 cut(s) 316, 319, 322, 325
BsuRI GGCC 1 cut(s) 170
Cac8I GCNNGC 4 cut(s) 17, 119, 131, 302
CciI TCATGA 1 cut(s) 30
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 108, 278
CviAII CATG 5 cut(s) 31, 130, 224, 290, 329
CviJI RGCY 7 cut(s) 43, 165, 170, 242, 248, 316, 397
CviKI_1 RGCY 7 cut(s) 43, 165, 170, 242, 248, 316, 397
CviQI GTAC 2 cut(s) 108, 278
DdeI CTNAG 3 cut(s) 79, 237, 243
DpnI GATC 3 cut(s) 266, 297, 321
DpnII GATC 3 cut(s) 264, 295, 319
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eco147I AGGCCT 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 135
FaeI CATG 5 cut(s) 34, 133, 227, 293, 332
FaiI YATR 9 cut(s) 32, 131, 225, 275, 291, 330, 344, 353, 369
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 5 cut(s) 30, 129, 223, 289, 328
Fnu4HI GCNGC 5 cut(s) 305, 308, 311, 314, 360
Fsp4HI GCNGC 5 cut(s) 305, 308, 311, 314, 360
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 20
GluI GCNGC 5 cut(s) 305, 308, 311, 314, 360
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 1 cut(s) 170
HhaI GCGC 1 cut(s) 21
Hin1II CATG 5 cut(s) 34, 133, 227, 293, 332
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 2 cut(s) 5, 10
HphI GGTGA 2 cut(s) 259, 347
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 31, 383
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 5 cut(s) 28, 84, 280, 294, 349
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 3 cut(s) 138, 388, 403
HpyCH4V TGCA 2 cut(s) 133, 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 310, 313
HpyF3I CTNAG 3 cut(s) 79, 237, 243
HpySE526I ACGT 3 cut(s) 138, 388, 403
Hsp92II CATG 5 cut(s) 34, 133, 227, 293, 332
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 264, 295, 319
LpnPI CCDG 9 cut(s) 118, 139, 152, 175, 179, 185, 224, 230, 318
Lsp1109I GCAGC 4 cut(s) 316, 319, 322, 325
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 114
MaeII ACGT 3 cut(s) 138, 388, 403
MaeIII GTNAC 1 cut(s) 404
MalI GATC 3 cut(s) 266, 297, 321
MboI GATC 3 cut(s) 264, 295, 319
MboII GAAGA 3 cut(s) 81, 177, 274
MluCI AATT 1 cut(s) 64
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 1 cut(s) 88
Mph1103I ATGCAT 1 cut(s) 135
MseI TTAA 2 cut(s) 156, 412
MslI CAYNNNNRTG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 239, 310, 313
NdeII GATC 3 cut(s) 264, 295, 319
NlaIII CATG 5 cut(s) 34, 133, 227, 293, 332
NsiI ATGCAT 1 cut(s) 135
NspI RCATGY 1 cut(s) 133
PaeI GCATGC 1 cut(s) 133
PagI TCATGA 1 cut(s) 30
PceI AGGCCT 1 cut(s) 170
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 5 cut(s) 306, 309, 312, 315, 361
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 139
Psp1406I AACGTT 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 165
PspPI GGNCC 1 cut(s) 202
RsaI GTAC 2 cut(s) 109, 279
RsaNI GTAC 2 cut(s) 108, 278
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 2 cut(s) 156, 412
SatI GCNGC 5 cut(s) 305, 308, 311, 314, 360
Sau3AI GATC 3 cut(s) 264, 295, 319
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 167
SfaNI GCATC 1 cut(s) 36
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 333
SphI GCATGC 1 cut(s) 133
Sse9I AATT 1 cut(s) 64
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 2 cut(s) 293, 359
SspMI CTAG 1 cut(s) 114
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 3 cut(s) 141, 391, 406
TaqI TCGA 2 cut(s) 8, 318
TasI AATT 1 cut(s) 64
TatI WGTACW 1 cut(s) 107
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 156, 412
Tru9I TTAA 2 cut(s) 156, 412
TseI GCWGC 4 cut(s) 304, 307, 310, 313
TspDTI ATGAA 6 cut(s) 19, 47, 75, 262, 363, 368
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 64
XceI RCATGY 1 cut(s) 133
XspI CTAG 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.