Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016614

Physical Location & Seq

Genomic Coordinates Reverse (-)

90883536 .. 90884464

Gene Structure 929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG692500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAGTCGAATCGCAAGCGCAGAGGGTTCATGAAGGGGAAGTTGACGCCATTCTATCGTGTTTCCAAACCTTCCTCAACCTCAACTACTACAACTACTAGTACAACTAGCAAGCAGTCTAGCAAGCAATACATGATGAGCAGCAAGGTTCAGCCGAGCCAGGCCTATCCTTTACCATCTTCGGTAGGGTTTCTGGTCCACAACCACAAGGACTATCATTTCATTGCAACTCAGGTTCAGGCTCAACCTAAACAGAAGATTACCTTCATAGTACCACCTTCTCCTGCGGATAGCAAGCAGCAGCAGCAGCTCGATCATAACCTTGCTGGTGATGAGATGGTTGATATGAAGGCGGCAACCTATATTTCATCAGTTCAAGAACGTTTCAAGCTTGAACGTAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.29

Weight (kDa)

9.99

Isoelectric Point (pI)

67.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01960
fragaria_vesca	FvH4_6g53750
prunus_persica	Prupe.3G308000_v2.0.a1
pyrus_communis	pycom17g00770
rosa_chinensis	RchiOBHm_Chr2g0175871
rosa_laevigata	RLG00000022361
rosa_multiflora	Rmu_sc0003282.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076980
rosa_rugosa	Rorug02G0588200
rosa_samantha	Rh2AG667500 Rh2BG679000 Rh2CG641800 Rh2DG692500
rosa_wichuraiana	Rw2G054710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	287, 353
AclI	AACGTT	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	2 cut(s)	103, 273
AgsI	TTSAA	3 cut(s)	377, 388, 395
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	2 cut(s)	310, 391
AluI	AGCT	2 cut(s)	310, 391
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	5 cut(s)	141, 298, 301, 304, 307
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	196
BbvI	GCAGC	5 cut(s)	153, 310, 313, 316, 319
BccI	CCATC	2 cut(s)	184, 331
BciT130I	CCWGG	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	3 cut(s)	99, 108, 120
BisI	GCNGC	6 cut(s)	142, 299, 302, 305, 308, 354
BlsI	GCNGC	6 cut(s)	143, 300, 303, 306, 309, 355
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	47
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	245
BseXI	GCAGC	5 cut(s)	153, 310, 313, 316, 319
BshFI	GGCC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	2 cut(s)	287, 353
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	222
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	4 cut(s)	17, 113, 125, 296
BstDEI	CTNAG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	304, 307
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	5 cut(s)	153, 310, 313, 316, 319
BsuRI	GGCC	1 cut(s)	164
Cac8I	GCNNGC	4 cut(s)	17, 113, 125, 296
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	102, 272
CviAII	CATG	2 cut(s)	31, 133
CviJI	RGCY	6 cut(s)	154, 159, 164, 242, 310, 391
CviKI_1	RGCY	6 cut(s)	154, 159, 164, 242, 310, 391
CviQI	GTAC	2 cut(s)	102, 272
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	34, 136
FaiI	YATR	6 cut(s)	32, 134, 269, 318, 347, 363
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	2 cut(s)	30, 132
Fnu4HI	GCNGC	6 cut(s)	142, 299, 302, 305, 308, 354
Fsp4HI	GCNGC	6 cut(s)	142, 299, 302, 305, 308, 354
FspBI	CTAG	3 cut(s)	99, 108, 120
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	6 cut(s)	142, 299, 302, 305, 308, 354
HaeIII	GGCC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	2 cut(s)	34, 136
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	2 cut(s)	5, 10
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	45, 199
Hpy188III	TCNNGA	2 cut(s)	31, 377
Hpy8I	GTNNAC	2 cut(s)	45, 199
HpyAV	CCTTC	5 cut(s)	28, 81, 274, 288, 343
HpyCH4IV	ACGT	2 cut(s)	382, 397
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	304, 307
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	382, 397
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	34, 136
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	313
LpnPI	CCDG	7 cut(s)	146, 173, 179, 218, 224, 297, 312
Lsp1109I	GCAGC	5 cut(s)	153, 310, 313, 316, 319
MaeI	CTAG	3 cut(s)	99, 108, 120
MaeII	ACGT	2 cut(s)	382, 397
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	171, 268
MluCI	AATT	1 cut(s)	403
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	3 cut(s)	17, 85, 91
MseI	TTAA	1 cut(s)	406
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	2 cut(s)	304, 307
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	34, 136
NmeAIII	GCCGAG	1 cut(s)	180
PagI	TCATGA	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	6 cut(s)	143, 300, 303, 306, 309, 355
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	196
RsaI	GTAC	2 cut(s)	103, 273
RsaNI	GTAC	2 cut(s)	102, 272
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	6 cut(s)	142, 299, 302, 305, 308, 354
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	196
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	1 cut(s)	403
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	287, 353
SspMI	CTAG	3 cut(s)	99, 108, 120
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	159
TaiI	ACGT	2 cut(s)	385, 400
TaqI	TCGA	2 cut(s)	8, 312
TasI	AATT	1 cut(s)	403
TatI	WGTACW	1 cut(s)	101
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TseI	GCWGC	5 cut(s)	141, 298, 301, 304, 307
TspDTI	ATGAA	6 cut(s)	19, 47, 211, 256, 357, 362
VpaK11BI	GGWCC	1 cut(s)	196
XspI	CTAG	3 cut(s)	99, 108, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.