FvH4_6g54000
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018470
Physical Location & Seq
Forward (+)
39492724 .. 39494428
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g54000.t1

Sequence Viewer

Length: 678 bp
ATGAACGGAGGAGGAGGAGGAGGAGCGAAGATGCTGCCTGTTGGGTACCGGTTTGATCCGACGGATGAAGAGCTTGTGGTTTACTACTTGAAGAGAAAGGTACATGGCCTCCCATTGCCGGCTTCCATCATTCCCGACTATAACAGCAACTACTACCTTGCTCATCCCTCCCACCTGCCAATGCCTCTAGGCAAGACTATGCAAAAGAGGTACTTCTTCTATAACAGTAAAGATAATTATCAAAGTGACAACAACCGCAGTAACTACAAGAGAGCTGCTGCTGCTGGTTGTGGTTTTTGGAGGTCCATTGGGAAAGAGAAGCAAATTGTTGACACTACTTGTTCTGATCAATGCGCCTGCAGCCAAGCTCAATTAGCTGCTGTACTTGCGGTGAGGAAAACCTTGGTTTTCTTCGGCAGTCATGGCAGGAAGAAGAAGACTACGCACCACCACCGCTACCGCTACCAACATCAAAACGGGAGCCTCAGTACTAGCCCTCGTTGGTTCATGCATGAGTATCACCTTCGGGGTTCTGAGGTATTAGGAAACAACTGGGTTCTCTGTAGTGTATTTCAGAAGAGGAGAAAGCTCACAAGCAAGAAAAGAGGTCGGACCTCAGCATTGGATAATATCGGATCTTGTGGCCATCTTCCCAAACCCTCTAATATGTTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

226

Amino Acids

25.55

Weight (kDa)

9.89

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 13 - 175 8.6e-26 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018470)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54000
rosa_chinensis RchiOBHm_Chr2g0176181
rosa_laevigata RLG00000022387
rosa_multiflora Rmu_sc0000405.1_g000011
rosa_roxburghii Rroxscaffold_2G00076700
rosa_rugosa Rorug02G0591300
rosa_samantha Rh2BG681500 Rh2CG644400 Rh2DG695200
rosa_wichuraiana Rw2G054960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 183
Acc36I ACCTGC 1 cut(s) 183
Acc65I GGTACC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 45
AciI CCGC 4 cut(s) 256, 389, 454, 460
AclWI GGATC 2 cut(s) 50, 643
AcoI YGGCCR 1 cut(s) 643
AfaI GTAC 5 cut(s) 47, 102, 212, 384, 490
AfiI CCNNNNNNNGG 1 cut(s) 118
AgeI ACCGGT 1 cut(s) 48
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 5 cut(s) 73, 275, 368, 377, 589
AluI AGCT 5 cut(s) 73, 275, 368, 377, 589
AlwI GGATC 2 cut(s) 50, 643
AoxI GGCC 2 cut(s) 106, 643
ApeKI GCWGC 6 cut(s) 34, 275, 278, 281, 360, 377
AsiGI ACCGGT 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 45
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 303, 612
AsuHPI GGTGA 2 cut(s) 403, 512
AvaII GGWCC 2 cut(s) 303, 612
BalI TGGCCA 1 cut(s) 645
BanI GGYRCC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 443
BbvCI CCTCAGC 1 cut(s) 616
BbvI GCAGC 6 cut(s) 21, 262, 265, 268, 364, 372
BccI CCATC 2 cut(s) 134, 654
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BclI TGATCA 1 cut(s) 346
BfaI CTAG 2 cut(s) 188, 492
BfmI CTRYAG 2 cut(s) 358, 562
BfuAI ACCTGC 1 cut(s) 183
BisI GCNGC 6 cut(s) 35, 276, 279, 282, 361, 378
BlsI GCNGC 6 cut(s) 36, 277, 280, 283, 362, 379
BmcAI AGTACT 1 cut(s) 490
Bme18I GGWCC 2 cut(s) 303, 612
BmgT120I GGNCC 2 cut(s) 303, 612
BmiI GGNNCC 2 cut(s) 47, 482
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 443
Bpu10I CCTNAGC 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 402
BsaWI WCCGGW 1 cut(s) 48
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 472, 502
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 2 cut(s) 48, 118
Bse1I ACTGG 1 cut(s) 557
Bse3DI GCAATG 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 2 cut(s) 70, 163
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 113
BseMII CTCAG 3 cut(s) 499, 525, 630
BseNI ACTGG 1 cut(s) 557
BseRI GAGGAG 6 cut(s) 24, 27, 30, 33, 36, 595
BseXI GCAGC 6 cut(s) 21, 262, 265, 268, 364, 372
BshFI GGCC 2 cut(s) 108, 645
BshNI GGYRCC 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 48
BsiSI CCGG 2 cut(s) 49, 119
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 2 cut(s) 108, 645
Bsp143I GATC 3 cut(s) 55, 346, 635
BspACI CCGC 4 cut(s) 256, 389, 454, 460
BspANI GGCC 2 cut(s) 108, 645
BspCNI CTCAG 3 cut(s) 498, 526, 629
BspLI GGNNCC 2 cut(s) 47, 482
BspMAI CTGCAG 1 cut(s) 362
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 2 cut(s) 50, 643
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 48, 118
BsrI ACTGG 1 cut(s) 557
BssAI RCCGGY 2 cut(s) 48, 118
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 3 cut(s) 55, 346, 635
BssT1I CCWWGG 1 cut(s) 402
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 3 cut(s) 63, 86, 572
BstC8I GCNNGC 2 cut(s) 120, 358
BstDEI CTNAG 3 cut(s) 485, 534, 616
BstF5I GGATG 2 cut(s) 70, 163
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 3 cut(s) 58, 349, 638
BstMBI GATC 3 cut(s) 55, 346, 635
BstMWI GCNNNNNNNGC 5 cut(s) 281, 360, 374, 386, 423
BstSFI CTRYAG 2 cut(s) 358, 562
BstV1I GCAGC 6 cut(s) 21, 262, 265, 268, 364, 372
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 635
BstYI RGATCY 1 cut(s) 635
BsuRI GGCC 2 cut(s) 108, 645
BtsCI GGATG 2 cut(s) 70, 163
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 120, 358
CfoI GCGC 1 cut(s) 356
Cfr10I RCCGGY 2 cut(s) 48, 118
Cfr13I GGNCC 2 cut(s) 303, 612
Csp6I GTAC 5 cut(s) 46, 101, 211, 383, 489
CspAI ACCGGT 1 cut(s) 48
CviAII CATG 4 cut(s) 104, 422, 508, 512
CviQI GTAC 5 cut(s) 46, 101, 211, 383, 489
DdeI CTNAG 3 cut(s) 485, 534, 616
DpnI GATC 3 cut(s) 57, 348, 637
DpnII GATC 3 cut(s) 55, 346, 635
EaeI YGGCCR 1 cut(s) 643
Eam1104I CTCTTC 3 cut(s) 63, 86, 572
EarI CTCTTC 3 cut(s) 63, 86, 572
Eco130I CCWWGG 1 cut(s) 402
Eco47I GGWCC 2 cut(s) 303, 612
EcoT14I CCWWGG 1 cut(s) 402
EcoT22I ATGCAT 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 4 cut(s) 107, 425, 511, 515
FaiI YATR 8 cut(s) 105, 141, 200, 222, 423, 509, 513, 668
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FatI CATG 4 cut(s) 103, 421, 507, 511
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 6 cut(s) 35, 276, 279, 282, 361, 378
FokI GGATG 2 cut(s) 77, 150
Fsp4HI GCNGC 6 cut(s) 35, 276, 279, 282, 361, 378
FspBI CTAG 2 cut(s) 188, 492
GlaI GCGC 1 cut(s) 355
GluI GCNGC 6 cut(s) 35, 276, 279, 282, 361, 378
HaeIII GGCC 2 cut(s) 108, 645
HapII CCGG 2 cut(s) 49, 119
HhaI GCGC 1 cut(s) 356
Hin1II CATG 4 cut(s) 107, 425, 511, 515
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HpaII CCGG 2 cut(s) 49, 119
HphI GGTGA 2 cut(s) 403, 512
Hpy166II GTNNAC 2 cut(s) 82, 331
Hpy188I TCNGA 6 cut(s) 60, 346, 535, 576, 612, 635
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 82, 331
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 533
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 202, 360, 511
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 360, 374, 386, 423
HpyF3I CTNAG 3 cut(s) 485, 534, 616
Hsp92II CATG 4 cut(s) 107, 425, 511, 515
HspAI GCGC 1 cut(s) 354
KpnI GGTACC 1 cut(s) 49
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 55, 346, 635
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 23, 480
LpnPI CCDG 8 cut(s) 51, 62, 132, 188, 270, 370, 412, 538
Lsp1109I GCAGC 6 cut(s) 21, 262, 265, 268, 364, 372
LweI GCATC 1 cut(s) 21
MaeI CTAG 2 cut(s) 188, 492
MaeIII GTNAC 2 cut(s) 245, 260
MalI GATC 3 cut(s) 57, 348, 637
MboI GATC 3 cut(s) 55, 346, 635
MflI RGATCY 1 cut(s) 635
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 3 cut(s) 235, 324, 371
MluNI TGGCCA 1 cut(s) 645
MmeI TCCRAC 2 cut(s) 83, 590
Mox20I TGGCCA 1 cut(s) 645
Mph1103I ATGCAT 1 cut(s) 513
MroNI GCCGGC 1 cut(s) 118
MscI TGGCCA 1 cut(s) 645
Msp20I TGGCCA 1 cut(s) 645
MspI CCGG 2 cut(s) 49, 119
MwoI GCNNNNNNNGC 5 cut(s) 281, 360, 374, 386, 423
NaeI GCCGGC 1 cut(s) 120
NdeII GATC 3 cut(s) 55, 346, 635
NgoMIV GCCGGC 1 cut(s) 118
NlaIII CATG 4 cut(s) 107, 425, 511, 515
NlaIV GGNNCC 2 cut(s) 47, 482
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 513
PaqCI CACCTGC 1 cut(s) 183
PciSI GCTCTTC 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 120
PinAI ACCGGT 1 cut(s) 48
PkrI GCNGC 6 cut(s) 36, 277, 280, 283, 362, 379
PspN4I GGNNCC 2 cut(s) 47, 482
PspPI GGNCC 2 cut(s) 303, 612
PstI CTGCAG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 635
RsaI GTAC 5 cut(s) 47, 102, 212, 384, 490
RsaNI GTAC 5 cut(s) 46, 101, 211, 383, 489
SapI GCTCTTC 1 cut(s) 63
SatI GCNGC 6 cut(s) 35, 276, 279, 282, 361, 378
Sau3AI GATC 3 cut(s) 55, 346, 635
Sau96I GGNCC 2 cut(s) 303, 612
ScaI AGTACT 1 cut(s) 490
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 2 cut(s) 358, 562
SinI GGWCC 2 cut(s) 303, 612
Sse9I AATT 3 cut(s) 235, 324, 371
SsiI CCGC 4 cut(s) 256, 389, 454, 460
SspMI CTAG 2 cut(s) 188, 492
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 672
TasI AATT 3 cut(s) 235, 324, 371
TatI WGTACW 2 cut(s) 382, 488
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 6 cut(s) 34, 275, 278, 281, 360, 377
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 17, 81, 496
TspGWI ACGGA 2 cut(s) 21, 77
VpaK11BI GGWCC 2 cut(s) 303, 612
XspI CTAG 2 cut(s) 188, 492
ZrmI AGTACT 1 cut(s) 490
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.