Rroxscaffold_2G00076700
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018470
Physical Location & Seq
Reverse (-)
459147 .. 460329
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076700.1

Sequence Viewer

Length: 384 bp
ATGAACGGAGGAGGAGGAGTGCAGATGCTGCCAGTTGGCTACCGGTTTGATCCGACGGATGAGGAGCTTGTGGTTCACTACTTGAGGAGAAAGGTCCATGGCCTCCCGCTGCCGGCTTCCATCATTCCCGACTATAACAACAACTACTACTTTGATCATCCCTCCCACCTGCCAATGCCTCCAGGCGAGACTATGCAAAAGAGGTACTTCTTCTACAATGGTGAATATAATGATGAAAAAAGTAAGAAGAACAACTACCGCAGTAACTATAAGAGGGCTGCTGCTGCTGCTGGTTGTGGTTTTGGAGGTCTATTGGGAAAGAGAAGCAAATTGTTGCTACTACTCATTCTGATCATCGAAGCAGCTGCAGCCAAGCTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

9.32

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 84 1.2e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018470)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54000
rosa_chinensis RchiOBHm_Chr2g0176181
rosa_laevigata RLG00000022387
rosa_multiflora Rmu_sc0000405.1_g000011
rosa_roxburghii Rroxscaffold_2G00076700
rosa_rugosa Rorug02G0591300
rosa_samantha Rh2BG681500 Rh2CG644400 Rh2DG695200
rosa_wichuraiana Rw2G054960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 177
AciI CCGC 2 cut(s) 107, 259
AclWI GGATC 1 cut(s) 44
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 112
AgeI ACCGGT 1 cut(s) 42
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 3 cut(s) 67, 365, 376
AluI AGCT 3 cut(s) 67, 365, 376
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 44
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 9 cut(s) 28, 109, 278, 281, 284, 287, 362, 365, 368
AsiGI ACCGGT 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 233
AvaII GGWCC 1 cut(s) 94
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbvI GCAGC 9 cut(s) 15, 96, 265, 268, 271, 274, 352, 374, 380
BccI CCATC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 2 cut(s) 154, 351
BcoDI GTCTC 1 cut(s) 182
BfmI CTRYAG 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 9 cut(s) 29, 110, 279, 282, 285, 288, 363, 366, 369
BlsI GCNGC 9 cut(s) 30, 111, 280, 283, 286, 289, 364, 367, 370
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse118I RCCGGY 2 cut(s) 42, 112
Bse1I ACTGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 64, 157
BseLI CCNNNNNNNGG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 5 cut(s) 24, 27, 30, 77, 100
BseXI GCAGC 9 cut(s) 15, 96, 265, 268, 271, 274, 352, 374, 380
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 102
BshTI ACCGGT 1 cut(s) 42
BsiSI CCGG 2 cut(s) 43, 113
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 49, 154, 351
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 2 cut(s) 107, 259
BspANI GGCC 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 42, 112
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 2 cut(s) 42, 112
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 3 cut(s) 49, 154, 351
BssT1I CCWWGG 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 64, 157
BstKTI GATC 3 cut(s) 52, 157, 354
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 3 cut(s) 49, 154, 351
BstMWI GCNNNNNNNGC 4 cut(s) 28, 284, 287, 368
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 9 cut(s) 15, 96, 265, 268, 271, 274, 352, 374, 380
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 2 cut(s) 64, 157
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 114
CaiI CAGNNNCTG 1 cut(s) 28
Cfr10I RCCGGY 2 cut(s) 42, 112
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 1 cut(s) 98
CviJI RGCY 8 cut(s) 39, 67, 102, 116, 278, 365, 371, 376
CviKI_1 RGCY 8 cut(s) 39, 67, 102, 116, 278, 365, 371, 376
CviQI GTAC 1 cut(s) 205
DpnI GATC 3 cut(s) 51, 156, 353
DpnII GATC 3 cut(s) 49, 154, 351
Eco130I CCWWGG 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 1 cut(s) 101
FaiI YATR 5 cut(s) 99, 135, 194, 228, 270
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 1 cut(s) 97
FauI CCCGC 1 cut(s) 114
FbaI TGATCA 2 cut(s) 154, 351
Fnu4HI GCNGC 9 cut(s) 29, 110, 279, 282, 285, 288, 363, 366, 369
FokI GGATG 2 cut(s) 71, 144
Fsp4HI GCNGC 9 cut(s) 29, 110, 279, 282, 285, 288, 363, 366, 369
GluI GCNGC 9 cut(s) 29, 110, 279, 282, 285, 288, 363, 366, 369
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 43, 113
Hin1II CATG 1 cut(s) 101
HpaII CCGG 2 cut(s) 43, 113
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 54, 351
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 58
HpyCH4V TGCA 3 cut(s) 22, 196, 368
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 284, 287, 368
Hsp92II CATG 1 cut(s) 101
KroI GCCGGC 1 cut(s) 112
KroNI GCCGGC 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 154, 351
Kzo9I GATC 3 cut(s) 49, 154, 351
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 45, 56, 126, 168, 182, 195, 276
Lsp1109I GCAGC 9 cut(s) 15, 96, 265, 268, 271, 274, 352, 374, 380
LweI GCATC 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 51, 156, 353
MboI GATC 3 cut(s) 49, 154, 351
MboII GAAGA 2 cut(s) 202, 259
MluCI AATT 2 cut(s) 329, 379
MmeI TCCRAC 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 112
MspA1I CMGCKG 2 cut(s) 109, 365
MspI CCGG 2 cut(s) 43, 113
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 4 cut(s) 28, 284, 287, 368
NaeI GCCGGC 1 cut(s) 114
NcoI CCATGG 1 cut(s) 97
NdeII GATC 3 cut(s) 49, 154, 351
NgoMIV GCCGGC 1 cut(s) 112
NlaIII CATG 1 cut(s) 101
PaqCI CACCTGC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 114
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 9 cut(s) 30, 111, 280, 283, 286, 289, 364, 367, 370
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SatI GCNGC 9 cut(s) 29, 110, 279, 282, 285, 288, 363, 366, 369
Sau3AI GATC 3 cut(s) 49, 154, 351
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 183
SetI ASST 7 cut(s) 69, 96, 171, 206, 310, 367, 378
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 2 cut(s) 329, 379
SsiI CCGC 2 cut(s) 107, 259
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 97
TaqI TCGA 1 cut(s) 357
TasI AATT 2 cut(s) 329, 379
TseI GCWGC 9 cut(s) 28, 109, 278, 281, 284, 287, 362, 365, 368
TspDTI ATGAA 2 cut(s) 17, 249
TspGWI ACGGA 2 cut(s) 21, 71
VpaK11BI GGWCC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.