Rh2BG681500
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018470
Physical Location & Seq
Forward (+)
89090540 .. 89091423
884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG681500.1

Sequence Viewer

Length: 729 bp
ATGAACGGAGGAGGAGGAGTGCAGATGCTACCAGTTGGCTACCGGTTTGATCCGACGGATGAGGAGCTTGTGGTTCACTACTTGAGGAGAAAGGTCCATGGCCTCCCACTGCCGGCTTCCATCATTCCCGACTATAACAACAACTACTACTTTGATCATCCCTCCCACCTGCCAATGCCTCCAGGCGAGACCATGCAAAAGAGGTACTTCTTCTACAATAGTGAATATAATGATGAAAAAAGTAAGAAGAACAACAACCGCAGTAACTATAAGAGGGCTGCTGCTGCTGCTGGTTGTGGTTCTTGGAGGTCTATTGGGAAAGAGAAGCAAATTGTTGCTACTACTCATTCTGATCATCAAAGCAGCTGCAGCCAAGCTCAATTAGCTGTCCTTGGGGTGAGGAAAACCTTGGTTTTCTGCGGCAGCCACAGGAAGAAGGAGACTAAGCACCATCACCACTACCACTACCACTACCAACATCAATATGGAAGCCTCAGTAGTAGCCCTCGATGGTTCATGCATGAATATAACCTTCTTGGTTCTGAGGTGTTAGGAAACAGCTGGATTCTCTGTAGTGTATTTCAGAAGAGGAGAAAGCCTGCGAGCAAGAAAAGAGGTCAGACCTCGACTTTGGATATTACAGGATCAGGCTATCTTCCCAAACCTTCCAATTCATGTTCGAGTGAAATCACTACTGACGATCAGGAGGTCTTTTCCAAATGTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

242

Amino Acids

27.64

Weight (kDa)

9.32

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 178 2.4e-23 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018470)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54000
rosa_chinensis RchiOBHm_Chr2g0176181
rosa_laevigata RLG00000022387
rosa_multiflora Rmu_sc0000405.1_g000011
rosa_roxburghii Rroxscaffold_2G00076700
rosa_rugosa Rorug02G0591300
rosa_samantha Rh2BG681500 Rh2CG644400 Rh2DG695200
rosa_wichuraiana Rw2G054960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 177
AciI CCGC 2 cut(s) 259, 420
AclWI GGATC 2 cut(s) 44, 652
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 112
AgeI ACCGGT 1 cut(s) 42
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 5 cut(s) 67, 366, 377, 386, 561
AluI AGCT 5 cut(s) 67, 366, 377, 386, 561
Alw26I GTCTC 2 cut(s) 182, 434
AlwI GGATC 2 cut(s) 44, 652
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 8 cut(s) 278, 281, 284, 287, 363, 366, 369, 423
ArsI GACNNNNNNTTYG 2 cut(s) 613, 645
AsiGI ACCGGT 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 409, 446
AvaII GGWCC 1 cut(s) 94
BbvI GCAGC 8 cut(s) 265, 268, 271, 274, 353, 375, 381, 435
BccI CCATC 3 cut(s) 128, 459, 504
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 2 cut(s) 154, 352
BcoDI GTCTC 2 cut(s) 182, 434
BfmI CTRYAG 2 cut(s) 367, 571
BfuAI ACCTGC 1 cut(s) 177
BisI GCNGC 9 cut(s) 279, 282, 285, 288, 364, 367, 370, 421, 424
BlsI GCNGC 9 cut(s) 280, 283, 286, 289, 365, 368, 371, 422, 425
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 97, 391, 408
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse118I RCCGGY 2 cut(s) 42, 112
Bse1I ACTGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 97, 391, 408
BseGI GGATG 2 cut(s) 64, 157
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 508, 534
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 6 cut(s) 24, 27, 30, 77, 100, 604
BseXI GCAGC 8 cut(s) 265, 268, 271, 274, 353, 375, 381, 435
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 102
BshTI ACCGGT 1 cut(s) 42
BsiSI CCGG 2 cut(s) 43, 113
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 2 cut(s) 182, 434
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 182
Bsp143I GATC 5 cut(s) 49, 154, 352, 644, 700
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 2 cut(s) 259, 420
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 507, 535
BspMAI CTGCAG 1 cut(s) 371
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 2 cut(s) 44, 652
BspTNI GGTCTC 1 cut(s) 182
BsrFI RCCGGY 2 cut(s) 42, 112
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 2 cut(s) 42, 112
BssECI CCNNGG 3 cut(s) 97, 391, 408
BssMI GATC 5 cut(s) 49, 154, 352, 644, 700
BssT1I CCWWGG 3 cut(s) 97, 391, 408
Bst2UI CCWGG 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 581
BstC8I GCNNGC 3 cut(s) 114, 600, 604
BstDEI CTNAG 3 cut(s) 444, 494, 543
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 64, 157
BstKTI GATC 5 cut(s) 52, 157, 355, 647, 703
BstMAI GTCTC 2 cut(s) 182, 434
BstMBI GATC 5 cut(s) 49, 154, 352, 644, 700
BstMWI GCNNNNNNNGC 4 cut(s) 284, 287, 369, 383
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 2 cut(s) 367, 571
BstV1I GCAGC 8 cut(s) 265, 268, 271, 274, 353, 375, 381, 435
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 2 cut(s) 64, 157
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 107
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 114, 600, 604
Cfr10I RCCGGY 2 cut(s) 42, 112
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 5 cut(s) 98, 193, 517, 521, 675
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 444, 494, 543
DpnI GATC 5 cut(s) 51, 156, 354, 646, 702
DpnII GATC 5 cut(s) 49, 154, 352, 644, 700
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Eco130I CCWWGG 3 cut(s) 97, 391, 408
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 3 cut(s) 97, 391, 408
EcoT22I ATGCAT 1 cut(s) 522
ErhI CCWWGG 3 cut(s) 97, 391, 408
FaeI CATG 5 cut(s) 101, 196, 520, 524, 678
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 5 cut(s) 97, 192, 516, 520, 674
FbaI TGATCA 2 cut(s) 154, 352
Fnu4HI GCNGC 9 cut(s) 279, 282, 285, 288, 364, 367, 370, 421, 424
FokI GGATG 2 cut(s) 71, 144
Fsp4HI GCNGC 9 cut(s) 279, 282, 285, 288, 364, 367, 370, 421, 424
GluI GCNGC 9 cut(s) 279, 282, 285, 288, 364, 367, 370, 421, 424
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 43, 113
Hin1II CATG 5 cut(s) 101, 196, 520, 524, 678
HinfI GANTC 1 cut(s) 565
HpaII CCGG 2 cut(s) 43, 113
HphI GGTGA 2 cut(s) 409, 446
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 5 cut(s) 54, 352, 544, 585, 621
Hpy188III TCNNGA 2 cut(s) 128, 704
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 3 cut(s) 430, 542, 675
HpyCH4V TGCA 4 cut(s) 22, 196, 369, 520
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 287, 369, 383
HpyF3I CTNAG 3 cut(s) 444, 494, 543
Hsp92II CATG 5 cut(s) 101, 196, 520, 524, 678
KroI GCCGGC 1 cut(s) 112
KroNI GCCGGC 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 154, 352
Kzo9I GATC 5 cut(s) 49, 154, 352, 644, 700
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 8 cut(s) 265, 268, 271, 274, 353, 375, 381, 435
LweI GCATC 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 263
MalI GATC 5 cut(s) 51, 156, 354, 646, 702
MboI GATC 5 cut(s) 49, 154, 352, 644, 700
MboII GAAGA 5 cut(s) 202, 259, 445, 598, 647
MluCI AATT 3 cut(s) 330, 380, 670
MmeI TCCRAC 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 522
MroNI GCCGGC 1 cut(s) 112
MslI CAYNNNNRTG 1 cut(s) 483
MspA1I CMGCKG 2 cut(s) 366, 561
MspI CCGG 2 cut(s) 43, 113
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 4 cut(s) 284, 287, 369, 383
NaeI GCCGGC 1 cut(s) 114
NcoI CCATGG 1 cut(s) 97
NdeII GATC 5 cut(s) 49, 154, 352, 644, 700
NgoMIV GCCGGC 1 cut(s) 112
NlaIII CATG 5 cut(s) 101, 196, 520, 524, 678
NsiI ATGCAT 1 cut(s) 522
PaqCI CACCTGC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 565
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 9 cut(s) 280, 283, 286, 289, 365, 368, 371, 422, 425
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 1 cut(s) 94
PstI CTGCAG 1 cut(s) 371
PvuII CAGCTG 2 cut(s) 366, 561
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 483
SatI GCNGC 9 cut(s) 279, 282, 285, 288, 364, 367, 370, 421, 424
Sau3AI GATC 5 cut(s) 49, 154, 352, 644, 700
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 183
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 2 cut(s) 367, 571
SinI GGWCC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 3 cut(s) 330, 380, 670
SsiI CCGC 2 cut(s) 259, 420
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 3 cut(s) 97, 391, 408
TaqI TCGA 3 cut(s) 508, 626, 680
TasI AATT 3 cut(s) 330, 380, 670
TauI GCSGC 1 cut(s) 423
TfiI GAWTC 1 cut(s) 565
TscAI CASTG 1 cut(s) 114
TseI GCWGC 8 cut(s) 278, 281, 284, 287, 363, 366, 369, 423
TspDTI ATGAA 5 cut(s) 17, 249, 505, 537, 663
TspGWI ACGGA 2 cut(s) 21, 71
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.