RLG00000022387
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018470
Physical Location & Seq
Forward (+)
83027493 .. 83028355
863 bp
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UTR
Exon/CDS
Intron
RLM00000022387

Sequence Viewer

Length: 726 bp
ATGAACGGAGGAGGAGGAGTGCAGATGCTGCCAGTTGGCTACCGGTTTGATCCGACGGATGAGGAGCTTGTGGTTCACTACTTGATGAGAAAGGTCCATGGCCTCCCACTGCCGGCTTCCATCATTCCCGACTATAACAACAACTACTACTTTGATCATCCCTCCCACCTGCCAATGCCTCCAGGCGAGACTATGCAAAAGAGGTACTTCTTCTACAATAGTGAATATAATGATGAAAGTAAGAAGAACAACAACCGCAGTAACAATAAGAGGGCTGCTGCTGCTGCTGGTTGTGGTTTTTGGAGGTCTATTGGGAAAGAGAAGCAAATTGTTGCTACTACTCATTCTGATCATCAAAGCAGCTGCAGCCAAGCTCAATTAGCTGTCCTTGGGGTGAGGAAAACCTTGGTTTTCTGCAGCAGCCACAGGAAGAAGAAGACTAAGCACCACCACCACTACCACTACCACTACCAACATCAATATGGAAGCCTCAGTAGTAGCCCTCGATGGTTCATGCATGAATATCACCTTCTTGGTTCAGGGGTGTTAGGAAACAGCTGGATTCTCTGTAGTGTATTTCAGAAGAGGAGAAAGCCTGCGAGCAAGAAAAGAGGTCGGACCTCAACTTTGGATATTACAGGATCAGGCCATCTTCCCAAACCTTCCAATTCATGTTCGAGTGAAATCACTACTGACGATCGGGAGGTCTTTTCCAAATGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

242

Amino Acids

27.48

Weight (kDa)

9.56

Isoelectric Point (pI)

61.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 11 - 177 3e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018470)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54000
rosa_chinensis RchiOBHm_Chr2g0176181
rosa_laevigata RLG00000022387
rosa_multiflora Rmu_sc0000405.1_g000011
rosa_roxburghii Rroxscaffold_2G00076700
rosa_rugosa Rorug02G0591300
rosa_samantha Rh2BG681500 Rh2CG644400 Rh2DG695200
rosa_wichuraiana Rw2G054960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 177
AciI CCGC 1 cut(s) 256
AclWI GGATC 2 cut(s) 44, 649
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 112
AgeI ACCGGT 1 cut(s) 42
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 5 cut(s) 67, 363, 374, 383, 558
AluI AGCT 5 cut(s) 67, 363, 374, 383, 558
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 44, 649
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 2 cut(s) 100, 646
ArsI GACNNNNNNTTYG 2 cut(s) 610, 642
AsiGI ACCGGT 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 94, 618
AsuHPI GGTGA 2 cut(s) 406, 518
AvaII GGWCC 2 cut(s) 94, 618
BbsI GAAGAC 1 cut(s) 443
BccI CCATC 3 cut(s) 128, 501, 657
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 2 cut(s) 154, 349
BcoDI GTCTC 1 cut(s) 182
BfmI CTRYAG 3 cut(s) 364, 415, 568
BfuAI ACCTGC 1 cut(s) 177
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 2 cut(s) 94, 618
BmgT120I GGNCC 2 cut(s) 94, 618
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 97, 388, 405
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse118I RCCGGY 2 cut(s) 42, 112
Bse1I ACTGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 97, 388, 405
BseGI GGATG 2 cut(s) 64, 157
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 505
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 5 cut(s) 24, 27, 30, 77, 601
BsgI GTGCAG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 700
BshFI GGCC 2 cut(s) 102, 648
BshTI ACCGGT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 700
BsiSI CCGG 2 cut(s) 43, 113
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 2 cut(s) 102, 648
Bsp143I GATC 5 cut(s) 49, 154, 349, 641, 697
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 1 cut(s) 256
BspANI GGCC 2 cut(s) 102, 648
BspCNI CTCAG 1 cut(s) 504
BspMAI CTGCAG 2 cut(s) 368, 419
BspMI ACCTGC 1 cut(s) 177
BspPI GGATC 2 cut(s) 44, 649
BsrFI RCCGGY 2 cut(s) 42, 112
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 2 cut(s) 42, 112
BssECI CCNNGG 3 cut(s) 97, 388, 405
BssMI GATC 5 cut(s) 49, 154, 349, 641, 697
BssT1I CCWWGG 3 cut(s) 97, 388, 405
Bst2UI CCWGG 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 3 cut(s) 114, 597, 601
BstDEI CTNAG 2 cut(s) 441, 491
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 64, 157
BstKTI GATC 5 cut(s) 52, 157, 352, 644, 700
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 5 cut(s) 49, 154, 349, 641, 697
BstMCI CGRYCG 1 cut(s) 700
BstMWI GCNNNNNNNGC 5 cut(s) 28, 281, 284, 366, 380
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 3 cut(s) 364, 415, 568
BstV2I GAAGAC 1 cut(s) 443
BsuRI GGCC 2 cut(s) 102, 648
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 2 cut(s) 64, 157
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 107
BveI ACCTGC 1 cut(s) 177
Cac8I GCNNGC 3 cut(s) 114, 597, 601
CaiI CAGNNNCTG 1 cut(s) 28
Cfr10I RCCGGY 2 cut(s) 42, 112
Cfr13I GGNCC 2 cut(s) 94, 618
Csp6I GTAC 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 4 cut(s) 98, 514, 518, 672
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 441, 491
DpnI GATC 5 cut(s) 51, 156, 351, 643, 699
DpnII GATC 5 cut(s) 49, 154, 349, 641, 697
Eam1104I CTCTTC 1 cut(s) 578
EarI CTCTTC 1 cut(s) 578
Eco130I CCWWGG 3 cut(s) 97, 388, 405
Eco47I GGWCC 2 cut(s) 94, 618
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 3 cut(s) 97, 388, 405
EcoT22I ATGCAT 1 cut(s) 519
ErhI CCWWGG 3 cut(s) 97, 388, 405
FaeI CATG 4 cut(s) 101, 517, 521, 675
FaiI YATR 8 cut(s) 99, 135, 194, 228, 483, 515, 519, 673
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 4 cut(s) 97, 513, 517, 671
FbaI TGATCA 2 cut(s) 154, 349
FokI GGATG 2 cut(s) 71, 144
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 102, 648
HapII CCGG 2 cut(s) 43, 113
Hin1II CATG 4 cut(s) 101, 517, 521, 675
HinfI GANTC 1 cut(s) 562
HpaII CCGG 2 cut(s) 43, 113
HphI GGTGA 2 cut(s) 406, 518
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 4 cut(s) 54, 349, 582, 618
Hpy188III TCNNGA 2 cut(s) 128, 701
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 539, 672
HpyCH4V TGCA 5 cut(s) 22, 196, 366, 417, 517
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 281, 284, 366, 380
HpyF3I CTNAG 2 cut(s) 441, 491
Hsp92II CATG 4 cut(s) 101, 517, 521, 675
KroI GCCGGC 1 cut(s) 112
KroNI GCCGGC 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 154, 349
Kzo9I GATC 5 cut(s) 49, 154, 349, 641, 697
LmnI GCTCC 1 cut(s) 64
LweI GCATC 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 260
MalI GATC 5 cut(s) 51, 156, 351, 643, 699
MboI GATC 5 cut(s) 49, 154, 349, 641, 697
MboII GAAGA 7 cut(s) 202, 256, 442, 445, 448, 595, 644
MluCI AATT 3 cut(s) 327, 377, 667
MmeI TCCRAC 2 cut(s) 77, 596
Mph1103I ATGCAT 1 cut(s) 519
MroNI GCCGGC 1 cut(s) 112
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 363, 558
MspI CCGG 2 cut(s) 43, 113
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 5 cut(s) 28, 281, 284, 366, 380
NaeI GCCGGC 1 cut(s) 114
NcoI CCATGG 1 cut(s) 97
NdeII GATC 5 cut(s) 49, 154, 349, 641, 697
NgoMIV GCCGGC 1 cut(s) 112
NlaIII CATG 4 cut(s) 101, 517, 521, 675
NsiI ATGCAT 1 cut(s) 519
PaqCI CACCTGC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 562
PinAI ACCGGT 1 cut(s) 42
Ple19I CGATCG 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 2 cut(s) 94, 618
PstI CTGCAG 2 cut(s) 368, 419
PstNI CAGNNNCTG 1 cut(s) 28
PvuI CGATCG 1 cut(s) 700
PvuII CAGCTG 2 cut(s) 363, 558
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 480
Sau3AI GATC 5 cut(s) 49, 154, 349, 641, 697
Sau96I GGNCC 2 cut(s) 94, 618
ScrFI CCNGG 1 cut(s) 183
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 3 cut(s) 364, 415, 568
SinI GGWCC 2 cut(s) 94, 618
SmiMI CAYNNNNRTG 1 cut(s) 480
Sse9I AATT 3 cut(s) 327, 377, 667
SsiI CCGC 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 3 cut(s) 97, 388, 405
TaqI TCGA 2 cut(s) 505, 677
TasI AATT 3 cut(s) 327, 377, 667
TfiI GAWTC 1 cut(s) 562
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 5 cut(s) 17, 249, 502, 534, 660
TspGWI ACGGA 2 cut(s) 21, 71
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 94, 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.