Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013293

Physical Location & Seq

Genomic Coordinates Reverse (-)

39615428 .. 39619269

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54200.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1968 bp

ATGAGGTTGTCTCTCATCATCAAACGCCAATATTCAGCTTCAACTAAACCCAACCCCAACCCCAACTCGAACTCGAACCTCACAGCGTGGTTCAACAAGTACGTGGACAAAACCGATGTCTCTTCCTGGAACTCAGTTATTGCAGACCTGGCTCGGAGTGGTAACTCCGTCGAAGCCCTCGGAGCCTTTTCGTCAATGCGGAAGCTCTCTCTCAGACCCAACCGCTCCTCCTTTCCTTGTGCTATCAAATCCTGCTCGGCACTGTTGGACGTTCACTCCGGCAGGCAAGCTCATCAGCAGGCCTTGGTCTTCGGCTTCGAGTCTGATCTATTCGTCTCCTCTGCTCTCATCGACATGTACTGCAGGTGTGGTTTATTGAGGGATGCGTGGAAGCTGTTCGATGAAATTCCTCACAGAAATGTGGTGTCTTGGACGTCCATGATCACAGGCTGCTTGCTAAACGACCACACCCGCCAAGCATTGTTGCTTTTCAAAGAGTTGTTGGTTGATGAGTTTGACAATGAGGATGTTGATCTAGACCCGGTTGTTCTGGTTTCGGTTTTATCGGCTTGTTCTCGTGTATCTAGCAAGGGACTTACACAATGTGTTCATGGTTTGGTGATGAAGAGGGGTTTTGATGGGGATATAGGTGTTGGGAATACATTGATGGATGCATATGCCAAATGTGGCGAGCTTGGTCTGTCTAGGAAGGTGTTTGATGGAATGGCTCAAAGGGATTTGGTTTCTTGGAATTCCATGATTGCAATATGTGCACAAAGTGGATTGTCCAATGAGGCATTGCAAGTCTTTTATGAGATGGTGAAGGAGGGTGGCTTCCTCTATAATGCAGTGACATTGTCTGCTGTGTTGTTAGCTTGTGCGCACGCTGGGGCTCTGCTGGTGGGGCAATGCATACATGATCAGGTTGTAAAAATGGGCATGGAAGAGAATGTGATCGTGTCTACCTCTATTATTGACATGTATTGCAAGTGTGGAAGAGTTGATATGGCAAGGAAGGCATTTGATTGCATGAAGGAGAAGAATGTCAAGACCTGGTCTGCCATGGTTGCAGGTTATGGAATGCATGGTCGTGCCAAGGAGGCTTTGGAAGTCTTCTACAAGATGATAAGCCATGGCATTAAGCCAAACTACATAACATTTGTGTCGCTTCTAAATGCTTGCAGCCATGCTGGTCTATTAGAGGAAGGATGGTATTGGTTTAATACCATGAACCATGAGTTTGGTGTAAAACCTGGGATTGAGCACTATGGGTGCATGGTGGACCTTCTTGGGCGTGCAGGTGATCTCACTAAGGCTTATAATTTAATAAAAGGAATGACAATGAAGGCAGATTCTGTGGTCTGGGGTTCCTTTCTTGGGGCTTGCAGGATACACAAAAACGTGAAGCTTGCGGAGATTTCAGCTAGGAAACTGTTTGAGTTGGATCCAAATAATTGTGGGTACTACATTTTGCTTTCAAATATATATGCCGATGCTGGGAGATGGGAAGATGTCGAGAAGATGAGAGTACTAATGAAGAATCGTGGATTGGCTAAACTTCCTGGATTCAGTGTGGTTGAACTGAAAGGTATGGTTCATTTATTTTTAGTTGGAGACAGAGAGCATCCTCAGCATAAAAAGATTTATGAGTATTTGGAAAAATTAACTATCAAGCTGCAAGAAGTTGGCTATGCACCTGATATGGCTTCAGTTCTCCATGACGTTGATGAAGAAGAGAAAGAAATGACCCTGAGAGTTCATAGTGAGAAGCTAGCTGTTGCCTTTGGAATAATGAATACAGTACCTGGTACAACAATTCAGATCATCAAGAATCTTCGAGTATGCGCTGACTGTCACACTGTGATCAAGTTGATTTCCAAGGTTATGAATCGGGAGATTGTAGTCAGAGATTCAAAACGGTTTCATCACTTTAAAGATGGGTTGTGTTCTTGTGGAGATTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

656

Amino Acids

73.13

Weight (kDa)

7.95

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	338 - 386	1.5e-06	PPR repeat family
PPR	PF01535	340 - 369	1.2e-07	PPR repeat
PPR_long	PF17177	345 - 490	6e-07	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	414 - 441	6.1e-06	PPR repeat
PPR_2	PF13041	439 - 487	9.4e-10	PPR repeat family
PPR	PF01535	443 - 472	4.1e-07	PPR repeat
E_motif	PF20431	557 - 619	4.2e-22	E motif
Eplus_motif	PF20430	624 - 649	1e-05	E+ motif
DYW_deaminase	PF14432	655 - 747	8.1e-44	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26782
fragaria_vesca	FvH4_6g54200 FvH4_6g54200 FvH4_6g54200
malus_domestica	MD09G1004300.v1.1 MD17G1007800.v1.1
prunus_persica	Prupe.3G312400_v2.0.a1
pyrus_communis	pycom111g00310 pycom17g00330
rosa_chinensis	RchiOBHm_Chr2g0176381
rosa_laevigata	RLG00000022408
rosa_multiflora	Rmu_co8497233.1_g000001 Rmu_sc0009140.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076480
rosa_rugosa	Rorug02G0593800
rosa_samantha	Rh2BG683700 Rh2CG646400
rosa_wichuraiana	Rw2G055130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1320
AarI	CACCTGC	2 cut(s)	354, 1289
AatII	GACGTC	1 cut(s)	437
Acc16I	TGCGCA	1 cut(s)	882
Acc36I	ACCTGC	3 cut(s)	354, 1061, 1289
AccBSI	CCGCTC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	962
AciI	CCGC	4 cut(s)	199, 223, 472, 1412
AclWI	GGATC	2 cut(s)	1439, 1452
AcsI	RAATTY	2 cut(s)	405, 751
AcuI	CTGAAG	1 cut(s)	1692
AcyI	GRCGYC	1 cut(s)	434
AdeI	CACNNNGTG	4 cut(s)	87, 605, 779, 1861
AfaI	GTAC	6 cut(s)	101, 359, 1463, 1530, 1803, 1810
AfiI	CCNNNNNNNGG	2 cut(s)	1377, 1497
AflIII	ACRYGT	2 cut(s)	354, 978
AgsI	TTSAA	6 cut(s)	42, 94, 493, 1479, 1580, 1914
AjnI	CCWGG	6 cut(s)	125, 147, 1052, 1252, 1561, 1804
AjuI	GAANNNNNNNTTGG	2 cut(s)	1532, 1564
Alw21I	GWGCWC	2 cut(s)	775, 1266
Alw26I	GTCTC	4 cut(s)	15, 124, 340, 1608
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	2 cut(s)	1439, 1452
AlwNI	CAGNNNCTG	2 cut(s)	1355, 1805
AoxI	GGCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	3 cut(s)	450, 1182, 1675
ApoI	RAATTY	2 cut(s)	405, 751
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	883, 1847
AspS9I	GGNCC	1 cut(s)	1282
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	3 cut(s)	631, 832, 1313
AsuNHI	GCTAGC	1 cut(s)	1771
AvaII	GGWCC	1 cut(s)	1282
BaeGI	GKGCMC	1 cut(s)	775
BamHI	GGATCC	1 cut(s)	1444
BanII	GRGCYC	1 cut(s)	895
BauI	CACGAG	1 cut(s)	576
BbsI	GAAGAC	2 cut(s)	301, 1105
Bbv12I	GWGCWC	2 cut(s)	775, 1266
BbvCI	CCTCAGC	1 cut(s)	1629
BbvI	GCAGC	3 cut(s)	437, 1194, 1662
BccI	CCATC	7 cut(s)	632, 661, 713, 811, 1203, 1497, 1931
BciT130I	CCWGG	6 cut(s)	127, 149, 1054, 1254, 1563, 1806
BciVI	GTATCC	1 cut(s)	1383
BclI	TGATCA	3 cut(s)	441, 919, 1863
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	4 cut(s)	15, 124, 340, 1608
BfaI	CTAG	5 cut(s)	536, 585, 705, 1425, 1772
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	3 cut(s)	354, 1061, 1289
BfuI	GTATCC	1 cut(s)	1383
BglI	GCCNNNNNGGC	1 cut(s)	1100
BisI	GCNGC	3 cut(s)	451, 1183, 1676
BlsI	GCNGC	3 cut(s)	452, 1184, 1677
BmcAI	AGTACT	1 cut(s)	1530
Bme1390I	CCNGG	7 cut(s)	127, 149, 542, 1054, 1254, 1563, 1806
Bme18I	GGWCC	1 cut(s)	1282
BmgT120I	GGNCC	1 cut(s)	1282
BmiI	GGNNCC	3 cut(s)	184, 1369, 1446
BmrFI	CCNGG	7 cut(s)	127, 149, 542, 1054, 1254, 1563, 1806
BmsI	GCATC	4 cut(s)	373, 661, 1483, 1633
BmtI	GCTAGC	1 cut(s)	1775
BpiI	GAAGAC	2 cut(s)	301, 1105
BplI	GAGNNNNNCTC	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	1629
BpuMI	CCSGG	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	7 cut(s)	178, 303, 1062, 1095, 1132, 1253, 1878
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	1377, 1497
Bse3DI	GCAATG	2 cut(s)	797, 914
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	6 cut(s)	127, 149, 1054, 1254, 1563, 1806
BseDI	CCNNGG	7 cut(s)	178, 303, 1062, 1095, 1132, 1253, 1878
BseGI	GGATG	5 cut(s)	388, 532, 676, 1214, 1624
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	2 cut(s)	1377, 1497
BseMI	GCAATG	2 cut(s)	797, 914
BseMII	CTCAG	4 cut(s)	147, 226, 1643, 1742
BseRI	GAGGAG	2 cut(s)	217, 328
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	3 cut(s)	437, 1194, 1662
BseYI	CCCAGC	2 cut(s)	887, 1496
BsgI	GTGCAG	1 cut(s)	1317
BshFI	GGCC	1 cut(s)	302
BsiHKAI	GWGCWC	2 cut(s)	775, 1266
BsiSI	CCGG	2 cut(s)	279, 542
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	1377, 1497
BsmAI	GTCTC	4 cut(s)	15, 124, 340, 1608
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	606
BsmI	GAATGC	1 cut(s)	1086
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	3 cut(s)	775, 895, 1266
Bsp143I	GATC	9 cut(s)	325, 441, 532, 919, 954, 1303, 1444, 1821, 1863
Bsp19I	CCATGG	2 cut(s)	1062, 1132
BspACI	CCGC	4 cut(s)	199, 223, 472, 1412
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	4 cut(s)	146, 225, 1642, 1743
BspLI	GGNNCC	3 cut(s)	184, 1369, 1446
BspMAI	CTGCAG	1 cut(s)	365
BspMI	ACCTGC	3 cut(s)	354, 1061, 1289
BspOI	GCTAGC	1 cut(s)	1775
BspPI	GGATC	2 cut(s)	1439, 1452
BsrBI	CCGCTC	1 cut(s)	225
BsrDI	GCAATG	2 cut(s)	797, 914
BssECI	CCNNGG	7 cut(s)	178, 303, 1062, 1095, 1132, 1253, 1878
BssMI	GATC	9 cut(s)	325, 441, 532, 919, 954, 1303, 1444, 1821, 1863
BssNI	GRCGYC	1 cut(s)	434
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	5 cut(s)	303, 1062, 1095, 1132, 1878
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	6 cut(s)	127, 149, 1054, 1254, 1563, 1806
Bst4CI	ACNGT	6 cut(s)	264, 1434, 1801, 1853, 1861, 1920
Bst6I	CTCTTC	5 cut(s)	127, 620, 939, 991, 1728
BstACI	GRCGYC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBAI	YACGTR	1 cut(s)	103
BstDEI	CTNAG	5 cut(s)	133, 212, 1311, 1629, 1751
BstDSI	CCRYGG	2 cut(s)	1062, 1132
BstF5I	GGATG	5 cut(s)	388, 532, 676, 1214, 1624
BstHHI	GCGC	2 cut(s)	883, 1847
BstKTI	GATC	9 cut(s)	328, 444, 535, 922, 957, 1306, 1447, 1824, 1866
BstMAI	GTCTC	4 cut(s)	15, 124, 340, 1608
BstMBI	GATC	9 cut(s)	325, 441, 532, 919, 954, 1303, 1444, 1821, 1863
BstMWI	GCNNNNNNNGC	8 cut(s)	149, 182, 770, 904, 1016, 1067, 1100, 1630
BstNI	CCWGG	6 cut(s)	127, 149, 1054, 1254, 1563, 1806
BstNSI	RCATGY	2 cut(s)	358, 982
BstSCI	CCNGG	7 cut(s)	125, 147, 540, 1052, 1252, 1561, 1804
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	1 cut(s)	775
BstV1I	GCAGC	3 cut(s)	437, 1194, 1662
BstV2I	GAAGAC	2 cut(s)	301, 1105
BstX2I	RGATCY	1 cut(s)	1444
BstXI	CCANNNNNNTGG	1 cut(s)	1241
BstYI	RGATCY	1 cut(s)	1444
BsuI	GTATCC	1 cut(s)	1383
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	2 cut(s)	1062, 1132
BtsCI	GGATG	5 cut(s)	388, 532, 676, 1214, 1624
BtsI	GCAGTG	1 cut(s)	855
BtsIMutI	CAGTG	4 cut(s)	260, 855, 1576, 1857
BveI	ACCTGC	3 cut(s)	354, 1061, 1289
CaiI	CAGNNNCTG	2 cut(s)	1355, 1805
CfoI	GCGC	2 cut(s)	883, 1847
Cfr13I	GGNCC	1 cut(s)	1282
CsiI	ACCWGGT	2 cut(s)	1052, 1804
Csp6I	GTAC	6 cut(s)	100, 358, 1462, 1529, 1802, 1809
CviQI	GTAC	6 cut(s)	100, 358, 1462, 1529, 1802, 1809
DdeI	CTNAG	5 cut(s)	133, 212, 1311, 1629, 1751
DpnI	GATC	9 cut(s)	327, 443, 534, 921, 956, 1305, 1446, 1823, 1865
DpnII	GATC	9 cut(s)	325, 441, 532, 919, 954, 1303, 1444, 1821, 1863
DraI	TTTAAA	1 cut(s)	1933
DraIII	CACNNNGTG	4 cut(s)	87, 605, 779, 1861
Eam1104I	CTCTTC	5 cut(s)	127, 620, 939, 991, 1728
EarI	CTCTTC	5 cut(s)	127, 620, 939, 991, 1728
Eco130I	CCWWGG	5 cut(s)	303, 1062, 1095, 1132, 1878
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	895
Eco47I	GGWCC	1 cut(s)	1282
Eco57I	CTGAAG	1 cut(s)	1692
EcoRI	GAATTC	1 cut(s)	751
EcoRII	CCWGG	6 cut(s)	125, 147, 1052, 1252, 1561, 1804
EcoT14I	CCWWGG	5 cut(s)	303, 1062, 1095, 1132, 1878
EcoT22I	ATGCAT	3 cut(s)	676, 914, 1086
EcoT38I	GRGCYC	1 cut(s)	895
ErhI	CCWWGG	5 cut(s)	303, 1062, 1095, 1132, 1878
Esp3I	CGTCTC	1 cut(s)	340
FaqI	GGGAC	1 cut(s)	606
FauI	CCCGC	1 cut(s)	479
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	3 cut(s)	441, 919, 1863
FblI	GTMKAC	1 cut(s)	962
Fnu4HI	GCNGC	3 cut(s)	451, 1183, 1676
FokI	GGATG	5 cut(s)	395, 539, 683, 1221, 1611
FriOI	GRGCYC	1 cut(s)	895
Fsp4HI	GCNGC	3 cut(s)	451, 1183, 1676
FspAI	RTGCGCAY	1 cut(s)	882
FspBI	CTAG	5 cut(s)	536, 585, 705, 1425, 1772
FspI	TGCGCA	1 cut(s)	882
GlaI	GCGC	2 cut(s)	882, 1846
GluI	GCNGC	3 cut(s)	451, 1183, 1676
GsaI	CCCAGC	2 cut(s)	891, 1500
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	2 cut(s)	279, 542
HhaI	GCGC	2 cut(s)	883, 1847
Hin1I	GRCGYC	1 cut(s)	434
Hin6I	GCGC	2 cut(s)	881, 1845
HinP1I	GCGC	2 cut(s)	881, 1845
HindIII	AAGCTT	1 cut(s)	1406
HinfI	GANTC	7 cut(s)	320, 1352, 1540, 1566, 1831, 1888, 1910
HpaII	CCGG	2 cut(s)	279, 542
HphI	GGTGA	3 cut(s)	631, 832, 1313
Hpy166II	GTNNAC	5 cut(s)	106, 274, 773, 963, 1282
Hpy188I	TCNGA	6 cut(s)	156, 182, 215, 325, 1821, 1907
Hpy188III	TCNNGA	5 cut(s)	536, 1048, 1516, 1828, 1892
Hpy8I	GTNNAC	5 cut(s)	106, 274, 773, 963, 1282
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	7 cut(s)	703, 817, 1009, 1027, 1199, 1295, 1339
HpyCH4III	ACNGT	6 cut(s)	264, 1434, 1801, 1853, 1861, 1920
HpyCH4IV	ACGT	5 cut(s)	102, 270, 434, 1401, 1722
HpyF10VI	GCNNNNNNNGC	8 cut(s)	149, 182, 770, 904, 1016, 1067, 1100, 1630
HpyF3I	CTNAG	5 cut(s)	133, 212, 1311, 1629, 1751
HpySE526I	ACGT	5 cut(s)	102, 270, 434, 1401, 1722
Hsp92I	GRCGYC	1 cut(s)	434
HspAI	GCGC	2 cut(s)	881, 1845
Ksp22I	TGATCA	3 cut(s)	441, 919, 1863
Kzo9I	GATC	9 cut(s)	325, 441, 532, 919, 954, 1303, 1444, 1821, 1863
LmnI	GCTCC	2 cut(s)	182, 230
Lsp1109I	GCAGC	3 cut(s)	437, 1194, 1662
LweI	GCATC	4 cut(s)	373, 661, 1483, 1633
MabI	ACCWGGT	2 cut(s)	1052, 1804
MaeI	CTAG	5 cut(s)	536, 585, 705, 1425, 1772
MaeII	ACGT	5 cut(s)	102, 270, 434, 1401, 1722
MaeIII	GTNAC	3 cut(s)	161, 850, 1853
MalI	GATC	9 cut(s)	327, 443, 534, 921, 956, 1305, 1446, 1823, 1865
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	9 cut(s)	325, 441, 532, 919, 954, 1303, 1444, 1821, 1863
MflI	RGATCY	1 cut(s)	1444
MhlI	GDGCHC	3 cut(s)	775, 895, 1266
MluCI	AATT	6 cut(s)	405, 751, 1321, 1453, 1661, 1815
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	3 cut(s)	246, 1422, 1591
Mph1103I	ATGCAT	3 cut(s)	676, 914, 1086
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	5 cut(s)	1140, 1221, 1325, 1664, 1932
MslI	CAYNNNNRTG	3 cut(s)	353, 417, 1089
MspI	CCGG	2 cut(s)	279, 542
MspR9I	CCNGG	7 cut(s)	127, 149, 542, 1054, 1254, 1563, 1806
Mva1269I	GAATGC	1 cut(s)	1086
MvaI	CCWGG	6 cut(s)	127, 149, 1054, 1254, 1563, 1806
MwoI	GCNNNNNNNGC	8 cut(s)	149, 182, 770, 904, 1016, 1067, 1100, 1630
NciI	CCSGG	1 cut(s)	542
NcoI	CCATGG	2 cut(s)	1062, 1132
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	9 cut(s)	325, 441, 532, 919, 954, 1303, 1444, 1821, 1863
NheI	GCTAGC	1 cut(s)	1771
NlaIV	GGNNCC	3 cut(s)	184, 1369, 1446
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	850, 1853
NsbI	TGCGCA	1 cut(s)	882
NsiI	ATGCAT	3 cut(s)	676, 914, 1086
NspI	RCATGY	2 cut(s)	358, 982
PaqCI	CACCTGC	2 cut(s)	354, 1289
PceI	AGGCCT	1 cut(s)	302
PciI	ACATGT	2 cut(s)	354, 978
PctI	GAATGC	1 cut(s)	1086
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	6 cut(s)	1352, 1540, 1566, 1831, 1888, 1910
PflFI	GACNNNGTC	2 cut(s)	856, 1054
PfoI	TCCNGGA	2 cut(s)	125, 1561
PkrI	GCNGC	3 cut(s)	452, 1184, 1677
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	103
PscI	ACATGT	2 cut(s)	354, 978
PsiI	TTATAA	1 cut(s)	1320
Psp6I	CCWGG	6 cut(s)	125, 147, 1052, 1252, 1561, 1804
PspFI	CCCAGC	2 cut(s)	887, 1496
PspGI	CCWGG	6 cut(s)	125, 147, 1052, 1252, 1561, 1804
PspN4I	GGNNCC	3 cut(s)	184, 1369, 1446
PspPI	GGNCC	1 cut(s)	1282
PstI	CTGCAG	1 cut(s)	365
PstNI	CAGNNNCTG	2 cut(s)	1355, 1805
PsuI	RGATCY	1 cut(s)	1444
PsyI	GACNNNGTC	2 cut(s)	856, 1054
RsaI	GTAC	6 cut(s)	101, 359, 1463, 1530, 1803, 1810
RsaNI	GTAC	6 cut(s)	100, 358, 1462, 1529, 1802, 1809
RseI	CAYNNNNRTG	3 cut(s)	353, 417, 1089
SaqAI	TTAA	5 cut(s)	1140, 1221, 1325, 1664, 1932
SatI	GCNGC	3 cut(s)	451, 1183, 1676
Sau3AI	GATC	9 cut(s)	325, 441, 532, 919, 954, 1303, 1444, 1821, 1863
Sau96I	GGNCC	1 cut(s)	1282
ScaI	AGTACT	1 cut(s)	1530
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	7 cut(s)	127, 149, 542, 1054, 1254, 1563, 1806
SduI	GDGCHC	3 cut(s)	775, 895, 1266
SexAI	ACCWGGT	2 cut(s)	1052, 1804
SfaNI	GCATC	4 cut(s)	373, 661, 1483, 1633
SfcI	CTRYAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	1282
SmiMI	CAYNNNNRTG	3 cut(s)	353, 417, 1089
Sse9I	AATT	6 cut(s)	405, 751, 1321, 1453, 1661, 1815
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	4 cut(s)	199, 223, 472, 1412
SspI	AATATT	1 cut(s)	32
SspMI	CTAG	5 cut(s)	536, 585, 705, 1425, 1772
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	7 cut(s)	125, 147, 540, 1052, 1252, 1561, 1804
StyI	CCWWGG	5 cut(s)	303, 1062, 1095, 1132, 1878
TaaI	ACNGT	6 cut(s)	264, 1434, 1801, 1853, 1861, 1920
TaiI	ACGT	5 cut(s)	105, 273, 437, 1404, 1725
TaqI	TCGA	8 cut(s)	68, 74, 171, 318, 351, 399, 1515, 1837
TasI	AATT	6 cut(s)	405, 751, 1321, 1453, 1661, 1815
TatI	WGTACW	2 cut(s)	357, 1528
TfiI	GAWTC	6 cut(s)	1352, 1540, 1566, 1831, 1888, 1910
Tru1I	TTAA	5 cut(s)	1140, 1221, 1325, 1664, 1932
Tru9I	TTAA	5 cut(s)	1140, 1221, 1325, 1664, 1932
TscAI	CASTG	4 cut(s)	267, 855, 1576, 1864
TseFI	GTSAC	2 cut(s)	850, 1853
TseI	GCWGC	3 cut(s)	450, 1182, 1675
Tsp45I	GTSAC	2 cut(s)	850, 1853
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	4 cut(s)	267, 855, 1576, 1864
Tth111I	GACNNNGTC	2 cut(s)	856, 1054
VneI	GTGCAC	1 cut(s)	771
VpaK11BI	GGWCC	1 cut(s)	1282
XapI	RAATTY	2 cut(s)	405, 751
XbaI	TCTAGA	1 cut(s)	535
XceI	RCATGY	2 cut(s)	358, 982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1102
XmiI	GTMKAC	1 cut(s)	962
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	5 cut(s)	536, 585, 705, 1425, 1772
ZraI	GACGTC	1 cut(s)	435
ZrmI	AGTACT	1 cut(s)	1530
Zsp2I	ATGCAT	3 cut(s)	676, 914, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.