Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013293

Physical Location & Seq

Genomic Coordinates Forward (+)

71562888 .. 71563752

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0593800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTTGCCGGACAATCATGGAAACTTGGGACAATATTCCGGAGCGGCAATATGGGGAAGTAGTCCATCAATTGATGTTCTCAGGAAACATGTCTATATTGCCACTGGGAACACGTATTCGGTCCCCGAAAATGTGAGTCAATGTCAAGAAAATCAGAACAATTCAACCGTACCTACTCATCCAGATGCCTGTGTCGAGCCTGACAACCATGGTAATTCAATCCTGGCACTTGATTTGGACACTGGTAATATCAAATGGTACCAGCAATTGGGCGGCTACGATGTATGCTGGCTAGATGTAGTTGTTGCCGTTCAGAAAAGCGGGTTTGCATGGGCTCTAGATCGGAATAACGGCCGTCTTGTGTGGTCTACGGAAGCTGGGCCTGGTGGCACCGGTGTAGGAGGAATATGGGGAGCAGCTACTGATGCGAGAAGGGTATACACTAACATTGCTAATCATTATGCAATGAACACAAGACCTCGGTTAAATTTTCGCACTGGGTCTCTGAATTCTCAGGACCGGCCCTGCGTGTATGGTGGCATGTCCATAGGCAATGGCTGCGTTTACATTGGCAATGGATATAGATTCCCCTATACTGTTGGAACCTCGCTGTTCGCCTTCTGTGTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

210

Amino Acids

22.68

Weight (kDa)

6.16

Isoelectric Point (pI)

23.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26782
fragaria_vesca	FvH4_6g54200 FvH4_6g54200 FvH4_6g54200
malus_domestica	MD09G1004300.v1.1 MD17G1007800.v1.1
prunus_persica	Prupe.3G312400_v2.0.a1
pyrus_communis	pycom111g00310 pycom17g00330
rosa_chinensis	RchiOBHm_Chr2g0176381
rosa_laevigata	RLG00000022408
rosa_multiflora	Rmu_co8497233.1_g000001 Rmu_sc0009140.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076480
rosa_rugosa	Rorug02G0593800
rosa_samantha	Rh2BG683700 Rh2CG646400
rosa_wichuraiana	Rw2G055130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	2 cut(s)	258, 389
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	44
AccI	GTMKAC	2 cut(s)	368, 438
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	3 cut(s)	44, 273, 321
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	2 cut(s)	487, 508
AfaI	GTAC	2 cut(s)	171, 260
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflIII	ACRYGT	2 cut(s)	88, 111
AgeI	ACCGGT	1 cut(s)	392
AgsI	TTSAA	2 cut(s)	165, 219
AjnI	CCWGG	2 cut(s)	222, 382
AluBI	AGCT	2 cut(s)	377, 419
AluI	AGCT	2 cut(s)	377, 419
Alw26I	GTCTC	1 cut(s)	507
AlwNI	CAGNNNCTG	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	38
AoxI	GGCC	3 cut(s)	352, 380, 521
ApeKI	GCWGC	2 cut(s)	416, 558
ApoI	RAATTY	2 cut(s)	487, 508
AsiGI	ACCGGT	1 cut(s)	392
Asp718I	GGTACC	1 cut(s)	258
AspS9I	GGNCC	4 cut(s)	121, 380, 517, 522
AvaII	GGWCC	2 cut(s)	121, 517
BanI	GGYRCC	2 cut(s)	258, 389
BanII	GRGCYC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	428, 545
BccI	CCATC	1 cut(s)	73
BceAI	ACGGC	3 cut(s)	293, 339, 367
BciT130I	CCWGG	2 cut(s)	224, 384
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	2 cut(s)	293, 338
BisI	GCNGC	4 cut(s)	45, 274, 417, 559
BlsI	GCNGC	4 cut(s)	46, 275, 418, 560
Bme1390I	CCNGG	2 cut(s)	224, 384
Bme18I	GGWCC	2 cut(s)	121, 517
BmgT120I	GGNCC	4 cut(s)	121, 380, 517, 522
BmiI	GGNNCC	4 cut(s)	123, 260, 391, 604
BmrFI	CCNGG	2 cut(s)	224, 384
BmrI	ACTGGG	2 cut(s)	114, 507
BmsI	GCATC	2 cut(s)	175, 415
BmuI	ACTGGG	2 cut(s)	114, 507
BsaAI	YACGTR	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	208, 479
BsaWI	WCCGGW	2 cut(s)	38, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse118I	RCCGGY	2 cut(s)	392, 519
Bse1I	ACTGG	3 cut(s)	109, 247, 502
Bse3DI	GCAATG	4 cut(s)	447, 471, 559, 580
BseAI	TCCGGA	1 cut(s)	38
BseBI	CCWGG	2 cut(s)	224, 384
BseDI	CCNNGG	2 cut(s)	208, 479
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	4 cut(s)	447, 471, 559, 580
BseMII	CTCAG	2 cut(s)	94, 527
BseNI	ACTGG	3 cut(s)	109, 247, 502
BseX3I	CGGCCG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	428, 545
BseYI	CCCAGC	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	3 cut(s)	354, 382, 523
BshNI	GGYRCC	2 cut(s)	258, 389
BshTI	ACCGGT	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	4 cut(s)	8, 39, 393, 520
BslFI	GGGAC	2 cut(s)	42, 107
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	2 cut(s)	42, 107
BsnI	GGCC	3 cut(s)	354, 382, 523
Bso31I	GGTCTC	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	340
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	3 cut(s)	44, 273, 321
BspANI	GGCC	3 cut(s)	354, 382, 523
BspCNI	CTCAG	2 cut(s)	93, 526
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	4 cut(s)	123, 260, 391, 604
BspT107I	GGYRCC	2 cut(s)	258, 389
BspTNI	GGTCTC	1 cut(s)	507
BsrBI	CCGCTC	1 cut(s)	44
BsrDI	GCAATG	4 cut(s)	447, 471, 559, 580
BsrFI	RCCGGY	2 cut(s)	392, 519
BsrI	ACTGG	3 cut(s)	109, 247, 502
BssAI	RCCGGY	2 cut(s)	392, 519
BssECI	CCNNGG	2 cut(s)	208, 479
BssMI	GATC	1 cut(s)	340
BssNAI	GTATAC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	208
Bst1107I	GTATAC	1 cut(s)	439
Bst2UI	CCWGG	2 cut(s)	224, 384
Bst4CI	ACNGT	2 cut(s)	169, 598
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	80, 513
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	1 cut(s)	340
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 558
BstNI	CCWGG	2 cut(s)	224, 384
BstNSI	RCATGY	2 cut(s)	92, 544
BstSCI	CCNGG	2 cut(s)	222, 382
BstV1I	GCAGC	2 cut(s)	428, 545
BstZ17I	GTATAC	1 cut(s)	439
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	3 cut(s)	354, 382, 523
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	3 cut(s)	102, 240, 495
Cac8I	GCNNGC	1 cut(s)	290
CaiI	CAGNNNCTG	1 cut(s)	422
Cfr10I	RCCGGY	2 cut(s)	392, 519
Cfr13I	GGNCC	4 cut(s)	121, 380, 517, 522
Csp6I	GTAC	2 cut(s)	170, 259
CspAI	ACCGGT	1 cut(s)	392
CviAII	CATG	6 cut(s)	17, 89, 209, 330, 541, 630
CviQI	GTAC	2 cut(s)	170, 259
DdeI	CTNAG	2 cut(s)	80, 513
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	352
EagI	CGGCCG	1 cut(s)	352
EclXI	CGGCCG	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	507
Eco47I	GGWCC	2 cut(s)	121, 517
Eco52I	CGGCCG	1 cut(s)	352
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	2 cut(s)	222, 382
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	6 cut(s)	20, 92, 212, 333, 544, 633
FaqI	GGGAC	2 cut(s)	42, 107
FatI	CATG	6 cut(s)	16, 88, 208, 329, 540, 629
FauI	CCCGC	1 cut(s)	314
FblI	GTMKAC	2 cut(s)	368, 438
Fnu4HI	GCNGC	4 cut(s)	45, 274, 417, 559
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	4 cut(s)	45, 274, 417, 559
FspBI	CTAG	2 cut(s)	293, 338
GluI	GCNGC	4 cut(s)	45, 274, 417, 559
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	354, 382, 523
HapII	CCGG	4 cut(s)	8, 39, 393, 520
Hin1II	CATG	6 cut(s)	20, 92, 212, 333, 544, 633
HinfI	GANTC	2 cut(s)	136, 585
HpaII	CCGG	4 cut(s)	8, 39, 393, 520
Hpy166II	GTNNAC	3 cut(s)	369, 439, 565
Hpy188I	TCNGA	4 cut(s)	156, 315, 345, 507
Hpy188III	TCNNGA	6 cut(s)	39, 82, 146, 182, 338, 515
Hpy8I	GTNNAC	3 cut(s)	369, 439, 565
HpyAV	CCTTC	2 cut(s)	426, 628
HpyCH4III	ACNGT	2 cut(s)	169, 598
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	329, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 558
HpyF3I	CTNAG	2 cut(s)	80, 513
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	6 cut(s)	20, 92, 212, 333, 544, 633
Kpn2I	TCCGGA	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	2 cut(s)	41, 413
Lsp1109I	GCAGC	2 cut(s)	428, 545
LweI	GCATC	2 cut(s)	175, 415
MaeI	CTAG	2 cut(s)	293, 338
MaeII	ACGT	1 cut(s)	113
MalI	GATC	1 cut(s)	342
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	1 cut(s)	340
MfeI	CAATTG	2 cut(s)	69, 266
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	6 cut(s)	69, 160, 214, 266, 487, 508
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	580
MnlI	CCTC	3 cut(s)	395, 489, 616
MroI	TCCGGA	1 cut(s)	38
MseI	TTAA	1 cut(s)	485
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	4 cut(s)	8, 39, 393, 520
MspR9I	CCNGG	2 cut(s)	224, 384
MunI	CAATTG	2 cut(s)	69, 266
MvaI	CCWGG	2 cut(s)	224, 384
MwoI	GCNNNNNNNGC	2 cut(s)	425, 558
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	6 cut(s)	20, 92, 212, 333, 544, 633
NlaIV	GGNNCC	4 cut(s)	123, 260, 391, 604
NspI	RCATGY	2 cut(s)	92, 544
PciI	ACATGT	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	585
PflMI	CCANNNNNTGG	1 cut(s)	268
PinAI	ACCGGT	1 cut(s)	392
PkrI	GCNGC	4 cut(s)	46, 275, 418, 560
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
Ppu21I	YACGTR	1 cut(s)	114
PscI	ACATGT	1 cut(s)	88
Psp6I	CCWGG	2 cut(s)	222, 382
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	222, 382
PspN4I	GGNNCC	4 cut(s)	123, 260, 391, 604
PspPI	GGNCC	4 cut(s)	121, 380, 517, 522
PstNI	CAGNNNCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	171, 260
RsaNI	GTAC	2 cut(s)	170, 259
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	4 cut(s)	45, 274, 417, 559
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	4 cut(s)	121, 380, 517, 522
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	224, 384
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	6 cut(s)	116, 175, 379, 421, 481, 608
SfaNI	GCATC	2 cut(s)	175, 415
SgrAI	CRCCGGYG	1 cut(s)	392
SinI	GGWCC	2 cut(s)	121, 517
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	6 cut(s)	69, 160, 214, 266, 487, 508
SsiI	CCGC	3 cut(s)	44, 273, 321
SspI	AATATT	1 cut(s)	35
SspMI	CTAG	2 cut(s)	293, 338
StyD4I	CCNGG	2 cut(s)	222, 382
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	2 cut(s)	169, 598
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	109
TasI	AATT	6 cut(s)	69, 160, 214, 266, 487, 508
TauI	GCSGC	2 cut(s)	47, 276
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	3 cut(s)	109, 247, 502
TseI	GCWGC	2 cut(s)	416, 558
TspDTI	ATGAA	1 cut(s)	482
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	3 cut(s)	109, 247, 502
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	121, 517
XapI	RAATTY	2 cut(s)	487, 508
XbaI	TCTAGA	1 cut(s)	337
XceI	RCATGY	2 cut(s)	92, 544
XmiI	GTMKAC	2 cut(s)	368, 438
XspI	CTAG	2 cut(s)	293, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.