Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003607

Physical Location & Seq

Genomic Coordinates Reverse (-)

3001152 .. 3004590

Gene Structure 3439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCCGCCGTAGCCTCAAACGACGCCGTTTCGCCTGGCGGTGGATACCGGCCCGGATGCATGACCAGCCACGTCGTCCAAGGCAGCCTGGAGAGCTACAGGTACTACATGTCTCGCCGTACGGTCATGGAGATGCTCAGCGACCGTGGCTACAACGTCCCCGACTCCGAGCTCACTCGCTCACTCACCGAGTTCCACACCGCGTTCGGCCAAAACCCTGACCTCGACCGTGTCTCCTTCTCCGTCTCTCTCCGCTCCAATCCCAAGAAGAAGATCATGGTCCTCTTCTGTGGAACTGATGAAATCAGAAAAGCGAATGCCCGTGAGATTTATGCTAAGCTCATGAACAAAGATATAAGCTCTCTCATGCTTGTTCTGCAAAGTAAAATCAACTCCTTTGCTCGAAAGGAACTGGAGACCTATCCTTACAAAGTTGAAACTTTCCATATTTCTGAACTGCTGGTCAATGTTACAAAGCATGTTTTACACCCAAAGTATGAGATACTTACCGCTGAAGAAAAGAAAAATCTGCTAAGGAAGTACAAGTTGGAAGACAAGAAGCTGCCTCTCATGCTGGAAACTGATGCATTTGCACGCTACTATGGATTGGAGAAGGGACAGGTTGTAAAGATTACTTACCGTGGTGGAGCTGTTGGTGCCCTCAAAACTTACCGTTGCATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0030880 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0055029 GO:0061695 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

229

Amino Acids

25.93

Weight (kDa)

9.4

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb5_N	PF03871	31 - 112	8.4e-23	RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb5_C	PF01191	155 - 227	8.3e-27	RNA polymerase Rpb5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54490
fragaria_vesca	FvH4_7g02710 FvH4_7g02710 FvH4_7g02710
malus_domestica	MD07G1036700.v1.1
prunus_persica	Prupe.2G032100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321871 RchiOBHm_Chr1g0321951 RchiOBHm_Chr3g0472601
rosa_laevigata	RLG00000030400 RLG00000030402
rosa_multiflora	Rmu_sc0000427.1_g000005 Rmu_sc0002872.1_g000006 Rmu_sc0003510.1_g000023 Rmu_sc0015497.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327410 Rroxscaffold_4G00327450
rosa_rugosa	Rorug01G0034400
rosa_samantha	Rh1AG047300 Rh1BG045400 Rh1CG051100 Rh1CG051500 Rh1DG055400 Rh1DG055800 Rh2CG536300 Rh3AG178800 Rh3BG204700 Rh3CG202100 Rh3CG224200 Rh5AG112100 Rh6AG330000
rosa_wichuraiana	Rw1G004250 Rw1G004290 Rw1G004310 Rw5G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	656
AccBSI	CCGCTC	1 cut(s)	255
AccII	CGCG	1 cut(s)	203
AciI	CCGC	5 cut(s)	6, 39, 201, 253, 510
AcoI	YGGCCR	2 cut(s)	3, 208
AcuI	CTGAAG	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	3 cut(s)	104, 121, 542
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	437
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	34, 87
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
AluBI	AGCT	6 cut(s)	96, 172, 340, 360, 562, 650
AluI	AGCT	6 cut(s)	96, 172, 340, 360, 562, 650
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	4 cut(s)	117, 238, 250, 410
AoxI	GGCC	3 cut(s)	3, 50, 208
ApeKI	GCWGC	2 cut(s)	84, 562
AspS9I	GGNCC	2 cut(s)	51, 280
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	656
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	96, 549
BceAI	ACGGC	2 cut(s)	11, 102
BciT130I	CCWGG	2 cut(s)	36, 89
BciVI	GTATCC	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	4 cut(s)	117, 238, 250, 410
BfmI	CTRYAG	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	38
BisI	GCNGC	3 cut(s)	6, 85, 563
BlpI	GCTNAGC	2 cut(s)	137, 336
BlsI	GCNGC	3 cut(s)	7, 86, 564
Bme1390I	CCNGG	3 cut(s)	36, 54, 89
Bme18I	GGWCC	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	51, 280
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	3 cut(s)	36, 54, 89
BmsI	GCATC	3 cut(s)	47, 123, 574
BpiI	GAAGAC	1 cut(s)	558
BpmI	CTGGAG	2 cut(s)	110, 434
Bpu10I	CCTNAGC	1 cut(s)	533
Bpu1102I	GCTNAGC	2 cut(s)	137, 336
BpuMI	CCSGG	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	3 cut(s)	79, 145, 640
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	36, 89
BseDI	CCNNGG	3 cut(s)	79, 145, 640
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	96, 549
Bsh1236I	CGCG	1 cut(s)	203
Bsh1285I	CGRYCG	2 cut(s)	145, 229
BshFI	GGCC	3 cut(s)	5, 52, 210
BshNI	GGYRCC	1 cut(s)	656
BsiEI	CGRYCG	2 cut(s)	145, 229
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	49, 54
BsiWI	CGTACG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	143, 630
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	4 cut(s)	117, 238, 250, 410
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	143, 630
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	5, 52, 210
Bso31I	GGTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	174, 661
Bsp143I	GATC	1 cut(s)	273
Bsp1720I	GCTNAGC	2 cut(s)	137, 336
BspACI	CCGC	5 cut(s)	6, 39, 201, 253, 510
BspANI	GGCC	3 cut(s)	5, 52, 210
BspCNI	CTCAG	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	658
BspT107I	GGYRCC	1 cut(s)	656
BspTNI	GGTCTC	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	3 cut(s)	79, 145, 640
BssMI	GATC	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	2 cut(s)	36, 89
Bst4CI	ACNGT	5 cut(s)	124, 146, 230, 641, 674
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	595
BstDEI	CTNAG	3 cut(s)	137, 336, 533
BstDSI	CCRYGG	2 cut(s)	145, 640
BstF5I	GGATG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	4 cut(s)	117, 238, 250, 410
BstMBI	GATC	1 cut(s)	273
BstMCI	CGRYCG	2 cut(s)	145, 229
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 66, 93, 147, 376, 571, 656
BstNI	CCWGG	2 cut(s)	36, 89
BstNSI	RCATGY	2 cut(s)	112, 482
BstSCI	CCNGG	3 cut(s)	34, 52, 87
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	661
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	96, 549
BstV2I	GAAGAC	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	3 cut(s)	5, 52, 210
BtgI	CCRYGG	2 cut(s)	145, 640
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	595
CciI	TCATGA	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	51, 280
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	103, 120, 541
CviAII	CATG	8 cut(s)	61, 109, 127, 277, 343, 367, 479, 571
CviQI	GTAC	3 cut(s)	103, 120, 541
DdeI	CTNAG	3 cut(s)	137, 336, 533
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
EaeI	YGGCCR	2 cut(s)	3, 208
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	280
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	34, 87
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	2 cut(s)	62, 589
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	8 cut(s)	64, 112, 130, 280, 346, 370, 482, 574
FaqI	GGGAC	2 cut(s)	143, 630
FatI	CATG	8 cut(s)	60, 108, 126, 276, 342, 366, 478, 570
Fnu4HI	GCNGC	3 cut(s)	6, 85, 563
FokI	GGATG	1 cut(s)	69
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	3 cut(s)	6, 85, 563
GluI	GCNGC	3 cut(s)	6, 85, 563
GsuI	CTGGAG	2 cut(s)	110, 434
HaeIII	GGCC	3 cut(s)	5, 52, 210
HapII	CCGG	2 cut(s)	49, 54
HgaI	GACGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	8 cut(s)	64, 112, 130, 280, 346, 370, 482, 574
HinfI	GANTC	1 cut(s)	164
HpaII	CCGG	2 cut(s)	49, 54
HphI	GGTGA	1 cut(s)	178
Hpy188I	TCNGA	3 cut(s)	169, 308, 454
Hpy188III	TCNNGA	1 cut(s)	343
Hpy99I	CGWCG	2 cut(s)	26, 77
HpyAV	CCTTC	2 cut(s)	247, 607
HpyCH4III	ACNGT	5 cut(s)	124, 146, 230, 641, 674
HpyCH4IV	ACGT	2 cut(s)	72, 156
HpyCH4V	TGCA	5 cut(s)	60, 379, 587, 593, 678
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 66, 93, 147, 376, 571, 656
HpyF3I	CTNAG	3 cut(s)	137, 336, 533
HpySE526I	ACGT	2 cut(s)	72, 156
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	8 cut(s)	64, 112, 130, 280, 346, 370, 482, 574
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	260, 647
Lsp1109I	GCAGC	2 cut(s)	96, 549
LweI	GCATC	3 cut(s)	47, 123, 574
MaeII	ACGT	2 cut(s)	72, 156
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	1 cut(s)	275
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	1 cut(s)	273
MboII	GAAGA	5 cut(s)	277, 280, 283, 527, 563
MhlI	GDGCHC	2 cut(s)	174, 661
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	5 cut(s)	25, 233, 293, 576, 671
Mph1103I	ATGCAT	2 cut(s)	62, 589
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	2 cut(s)	49, 54
MspR9I	CCNGG	3 cut(s)	36, 54, 89
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	2 cut(s)	36, 89
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	7 cut(s)	11, 66, 93, 147, 376, 571, 656
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	8 cut(s)	64, 112, 130, 280, 346, 370, 482, 574
NlaIV	GGNNCC	1 cut(s)	658
NsiI	ATGCAT	2 cut(s)	62, 589
NspI	RCATGY	2 cut(s)	112, 482
PagI	TCATGA	1 cut(s)	342
PciI	ACATGT	1 cut(s)	108
PctI	GAATGC	1 cut(s)	322
Pfl23II	CGTACG	1 cut(s)	119
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	7, 86, 564
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PscI	ACATGT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	34, 87
PspGI	CCWGG	2 cut(s)	34, 87
PspLI	CGTACG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	658
PspPI	GGNCC	2 cut(s)	51, 280
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	3 cut(s)	104, 121, 542
RsaNI	GTAC	3 cut(s)	103, 120, 541
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	174
SatI	GCNGC	3 cut(s)	6, 85, 563
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	2 cut(s)	51, 280
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	3 cut(s)	36, 54, 89
SduI	GDGCHC	2 cut(s)	174, 661
SfaNI	GCATC	3 cut(s)	47, 123, 574
SfcI	CTRYAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	131
SsiI	CCGC	5 cut(s)	6, 39, 201, 253, 510
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	3 cut(s)	34, 52, 87
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	5 cut(s)	124, 146, 230, 641, 674
TaiI	ACGT	2 cut(s)	75, 159
TaqI	TCGA	2 cut(s)	225, 403
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	84, 562
TspDTI	ATGAA	2 cut(s)	315, 359
TspGWI	ACGGA	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	280
XceI	RCATGY	2 cut(s)	112, 482
Zsp2I	ATGCAT	2 cut(s)	62, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.