Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003510.1

Orthogroup ID

OG0003607

Physical Location & Seq

Genomic Coordinates Reverse (-)

88254 .. 90917

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003510.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggagatgctgagcgaccgaggctacaacgtcgccgactcggacctcactcgctcattcaataagttccgtaccgcgttcggccgaaaccctgacctcgacctcctcaccatctgcgtctctctcagctccaattccaagaacaagattatggtcatgttctgtggaactgatgaaatcagaaaggcgagtgttcgtgtcattcatgctatcctcctgaacaaggatataagctctctgatgcttgtcctgcaaagtaaaatgaactcctcgaaaagaactgctccctatgcatttgcacgctactatggattggagaaggaacagctatgtggtaaagattacttaccatgcatggtggagctgttggtgccctcaaaacttaccattgcattgtctgatccttctaaaagatttattgtatgccactttatgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0030880 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0055029 GO:0061695 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

146

Amino Acids

16.56

Weight (kDa)

9.16

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54490
fragaria_vesca	FvH4_7g02710 FvH4_7g02710 FvH4_7g02710
malus_domestica	MD07G1036700.v1.1
prunus_persica	Prupe.2G032100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321871 RchiOBHm_Chr1g0321951 RchiOBHm_Chr3g0472601
rosa_laevigata	RLG00000030400 RLG00000030402
rosa_multiflora	Rmu_sc0000427.1_g000005 Rmu_sc0002872.1_g000006 Rmu_sc0003510.1_g000023 Rmu_sc0015497.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327410 Rroxscaffold_4G00327450
rosa_rugosa	Rorug01G0034400
rosa_samantha	Rh1AG047300 Rh1BG045400 Rh1CG051100 Rh1CG051500 Rh1DG055400 Rh1DG055800 Rh2CG536300 Rh3AG178800 Rh3BG204700 Rh3CG202100 Rh3CG224200 Rh5AG112100 Rh6AG330000
rosa_wichuraiana	Rw1G004250 Rw1G004290 Rw1G004310 Rw5G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	370
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	82
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	4 cut(s)	129, 234, 328, 364
AluI	AGCT	4 cut(s)	129, 234, 328, 364
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	370
BccI	CCATC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	124
BlpI	GCTNAGC	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	372
BmsI	GCATC	1 cut(s)	231
Bpu1102I	GCTNAGC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	95, 259
BseSI	GKGCMC	1 cut(s)	375
BseX3I	CGGCCG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	2 cut(s)	19, 85
BshFI	GGCC	1 cut(s)	84
BshNI	GGYRCC	1 cut(s)	370
BsiEI	CGRYCG	2 cut(s)	19, 85
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	400
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	11, 125
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	400
BstMCI	CGRYCG	2 cut(s)	19, 85
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 250, 290, 370
BstSLI	GKGCMC	1 cut(s)	375
BstUI	CGCG	1 cut(s)	77
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	43
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	4 cut(s)	157, 206, 351, 355
CviJI	RGCY	6 cut(s)	24, 84, 129, 234, 328, 364
CviKI_1	RGCY	6 cut(s)	24, 84, 129, 234, 328, 364
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	11, 125
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoT22I	ATGCAT	2 cut(s)	295, 356
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	4 cut(s)	160, 209, 354, 358
FatI	CATG	4 cut(s)	156, 205, 350, 354
HaeIII	GGCC	1 cut(s)	84
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	4 cut(s)	160, 209, 354, 358
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	4 cut(s)	43, 182, 240, 400
Hpy188III	TCNNGA	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	313, 414
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	6 cut(s)	253, 293, 299, 354, 392, 436
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 250, 290, 370
HpyF3I	CTNAG	2 cut(s)	11, 125
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	160, 209, 354, 358
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	3 cut(s)	134, 289, 361
LpnPI	CCDG	3 cut(s)	105, 230, 263
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	1 cut(s)	30
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	8 cut(s)	14, 56, 107, 113, 116, 224, 280, 385
Mph1103I	ATGCAT	2 cut(s)	295, 356
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	21, 250, 290, 370
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	4 cut(s)	160, 209, 354, 358
NlaIV	GGNNCC	1 cut(s)	372
NsiI	ATGCAT	2 cut(s)	295, 356
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	8 cut(s)	33, 48, 99, 105, 131, 236, 330, 366
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	43
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	1 cut(s)	75
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	99, 272
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	189, 194, 278
TspGWI	ACGGA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	43
XagI	CCTNNNNNAGG	1 cut(s)	221
Zsp2I	ATGCAT	2 cut(s)	295, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.