Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003607

Physical Location & Seq

Genomic Coordinates Reverse (-)

3470052 .. 3473923

Gene Structure 3872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G032100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCTACCGGCAACGAGAACGACGTCGTTTTGGGTTGCGATGGAGGACGACGACCGGGATGTATAACGAGCCATGTGGTGGAGGGGAGCATGGAGAGCTACAGATTCTACTTGTCTCGTCGTACGGCCATGGAGATGCTGAGTGACCGAGGCTGCGACGTCTCTGACTCGGACCTCTCTCTTTCACTCACTGAGTTCCACTCCCAGTTCGGCCCCAAACCGGACCTCCAGCAGCTCCGTATCTGCGTCTCTCTGCGCTCCAATCCCTCCAAGAAGATTGTTGTCATCTTTTGTGGAACTGAGGAAATAAGGAAACAGACTATGTGTGGCATCTATGCTGGCCTCCCGAACAAAGAAAATATACACCGGCTGATTCTTGTCCTGCAAAGTAAAATGAACTCCTATGCTCGGAAAGAACTGGAGATGTATCCATTTAAAGTTGAGACTTTCCATATTTGTGACTTGCTGGTCAATATTACAAAACATGCTCTGAAGCCAAAGCTCGAGATACTCACTGCCGAAGAAAAGAACAAGCTGCTAAGGAAGTACAAGTTGGAAGACAAGCAGCTCCCTCTAATGCTGGAAACTGATGGAATTGCTCGATACTATGGATTGGAGAAAGGGAAGGTTGTAAAAGTTACTTACAGTGGTGGAGTTGTTGGTTCCCTCAGAACTTACCGCTGCGTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0030880 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0055029 GO:0061695 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

231

Amino Acids

26.03

Weight (kDa)

8.94

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54490
fragaria_vesca	FvH4_7g02710 FvH4_7g02710 FvH4_7g02710
malus_domestica	MD07G1036700.v1.1
prunus_persica	Prupe.2G032100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321871 RchiOBHm_Chr1g0321951 RchiOBHm_Chr3g0472601
rosa_laevigata	RLG00000030400 RLG00000030402
rosa_multiflora	Rmu_sc0000427.1_g000005 Rmu_sc0002872.1_g000006 Rmu_sc0003510.1_g000023 Rmu_sc0015497.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327410 Rroxscaffold_4G00327450
rosa_rugosa	Rorug01G0034400
rosa_samantha	Rh1AG047300 Rh1BG045400 Rh1CG051100 Rh1CG051500 Rh1DG055400 Rh1DG055800 Rh2CG536300 Rh3AG178800 Rh3BG204700 Rh3CG202100 Rh3CG224200 Rh5AG112100 Rh6AG330000
rosa_wichuraiana	Rw1G004250 Rw1G004290 Rw1G004310 Rw5G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
AatII	GACGTC	2 cut(s)	27, 162
AccB7I	CCANNNNNTGG	1 cut(s)	79
AciI	CCGC	1 cut(s)	679
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	2 cut(s)	24, 159
AfaI	GTAC	2 cut(s)	124, 548
AfiI	CCNNNNNNNGG	3 cut(s)	79, 220, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	5 cut(s)	99, 235, 502, 535, 568
AluI	AGCT	5 cut(s)	99, 235, 502, 535, 568
Alw26I	GTCTC	4 cut(s)	120, 166, 253, 437
Ama87I	CYCGRG	1 cut(s)	503
AoxI	GGCC	3 cut(s)	126, 211, 340
ApeKI	GCWGC	5 cut(s)	153, 232, 535, 565, 681
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	172, 212, 223
AsuC2I	CCSGG	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	172, 223
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	5 cut(s)	140, 244, 522, 577, 668
BccI	CCATC	2 cut(s)	35, 584
BceAI	ACGGC	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	4 cut(s)	120, 166, 253, 437
BfmI	CTRYAG	1 cut(s)	100
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	5 cut(s)	154, 233, 536, 566, 682
BlsI	GCNGC	5 cut(s)	155, 234, 537, 567, 683
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	2 cut(s)	172, 223
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	3 cut(s)	172, 212, 223
BmiI	GGNNCC	2 cut(s)	214, 664
BmrFI	CCNGG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	126, 339
BmuI	ACTGGG	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	564
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	2 cut(s)	212, 440
Bpu10I	CCTNAGC	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	2 cut(s)	24, 159
BsaJI	CCNNGG	2 cut(s)	129, 148
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 220, 408
Bse118I	RCCGGY	2 cut(s)	8, 366
Bse1I	ACTGG	2 cut(s)	205, 423
BseDI	CCNNGG	2 cut(s)	129, 148
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	3 cut(s)	79, 220, 408
BseMII	CTCAG	4 cut(s)	131, 183, 291, 682
BseNI	ACTGG	2 cut(s)	205, 423
BseXI	GCAGC	5 cut(s)	140, 244, 522, 577, 668
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	3 cut(s)	128, 213, 342
BsiEI	CGRYCG	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	4 cut(s)	9, 56, 221, 367
BsiWI	CGTACG	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	79, 220, 408
BsmAI	GTCTC	4 cut(s)	120, 166, 253, 437
BsmBI	CGTCTC	2 cut(s)	166, 253
BsnI	GGCC	3 cut(s)	128, 213, 342
BsoBI	CYCGRG	1 cut(s)	503
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	679
BspANI	GGCC	3 cut(s)	128, 213, 342
BspCNI	CTCAG	4 cut(s)	132, 184, 292, 681
BspLI	GGNNCC	2 cut(s)	214, 664
BsrFI	RCCGGY	2 cut(s)	8, 366
BsrI	ACTGG	2 cut(s)	205, 423
BssAI	RCCGGY	2 cut(s)	8, 366
BssECI	CCNNGG	2 cut(s)	129, 148
BssNI	GRCGYC	2 cut(s)	24, 159
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	647
BstACI	GRCGYC	2 cut(s)	24, 159
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	5 cut(s)	140, 192, 300, 539, 668
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	258
BstMAI	GTCTC	4 cut(s)	120, 166, 253, 437
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	5 cut(s)	140, 244, 522, 577, 668
BstV2I	GAAGAC	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	128, 213, 342
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	65
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	3 cut(s)	189, 513, 652
Cac8I	GCNNGC	1 cut(s)	340
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	2 cut(s)	8, 366
Cfr13I	GGNCC	3 cut(s)	172, 212, 223
CseI	GACGC	2 cut(s)	235, 673
Csp6I	GTAC	2 cut(s)	123, 547
CviAII	CATG	4 cut(s)	74, 91, 130, 485
CviQI	GTAC	2 cut(s)	123, 547
DdeI	CTNAG	5 cut(s)	140, 192, 300, 539, 668
DraI	TTTAAA	1 cut(s)	436
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	172, 223
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	2 cut(s)	166, 253
FaeI	CATG	4 cut(s)	77, 94, 133, 488
FatI	CATG	4 cut(s)	73, 90, 129, 484
Fnu4HI	GCNGC	5 cut(s)	154, 233, 536, 566, 682
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	5 cut(s)	154, 233, 536, 566, 682
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	5 cut(s)	154, 233, 536, 566, 682
GsuI	CTGGAG	2 cut(s)	212, 440
HaeIII	GGCC	3 cut(s)	128, 213, 342
HapII	CCGG	4 cut(s)	9, 56, 221, 367
HgaI	GACGC	2 cut(s)	235, 673
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	2 cut(s)	24, 159
Hin1II	CATG	4 cut(s)	77, 94, 133, 488
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	105, 167, 373
HpaII	CCGG	4 cut(s)	9, 56, 221, 367
Hpy188I	TCNGA	6 cut(s)	166, 172, 411, 492, 671, 692
Hpy188III	TCNNGA	2 cut(s)	346, 505
Hpy99I	CGWCG	6 cut(s)	26, 29, 54, 123, 161, 689
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	2 cut(s)	24, 159
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	5 cut(s)	140, 192, 300, 539, 668
HpySE526I	ACGT	2 cut(s)	24, 159
Hsp92I	GRCGYC	2 cut(s)	24, 159
Hsp92II	CATG	4 cut(s)	77, 94, 133, 488
HspAI	GCGC	1 cut(s)	256
LmnI	GCTCC	4 cut(s)	87, 240, 263, 573
Lsp1109I	GCAGC	5 cut(s)	140, 244, 522, 577, 668
LweI	GCATC	2 cut(s)	126, 339
MaeII	ACGT	2 cut(s)	24, 159
MaeIII	GTNAC	3 cut(s)	143, 458, 637
MboII	GAAGA	3 cut(s)	286, 533, 569
MluCI	AATT	1 cut(s)	594
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	534
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	2 cut(s)	134, 456
MspA1I	CMGCKG	1 cut(s)	681
MspI	CCGG	4 cut(s)	9, 56, 221, 367
MspR9I	CCNGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	129
NlaIII	CATG	4 cut(s)	77, 94, 133, 488
NlaIV	GGNNCC	2 cut(s)	214, 664
NmuCI	GTSAC	2 cut(s)	143, 458
NspI	RCATGY	1 cut(s)	488
PaeR7I	CTCGAG	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	105, 373
Pfl23II	CGTACG	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	5 cut(s)	155, 234, 537, 567, 683
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PspLI	CGTACG	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	214, 664
PspPI	GGNCC	3 cut(s)	172, 212, 223
RsaI	GTAC	2 cut(s)	124, 548
RsaNI	GTAC	2 cut(s)	123, 547
RseI	CAYNNNNRTG	2 cut(s)	134, 456
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	5 cut(s)	154, 233, 536, 566, 682
Sau96I	GGNCC	3 cut(s)	172, 212, 223
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	57
SfaNI	GCATC	2 cut(s)	126, 339
SfcI	CTRYAG	1 cut(s)	100
Sfr274I	CTCGAG	1 cut(s)	503
SinI	GGWCC	2 cut(s)	172, 223
SlaI	CTCGAG	1 cut(s)	503
SmiMI	CAYNNNNRTG	2 cut(s)	134, 456
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	1 cut(s)	594
SsiI	CCGC	1 cut(s)	679
SspI	AATATT	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	2 cut(s)	27, 162
TaqI	TCGA	2 cut(s)	504, 601
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	594
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	105, 373
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	3 cut(s)	196, 520, 652
TseFI	GTSAC	2 cut(s)	143, 458
TseI	GCWGC	5 cut(s)	153, 232, 535, 565, 681
Tsp45I	GTSAC	2 cut(s)	143, 458
TspDTI	ATGAA	1 cut(s)	410
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	196, 520, 652
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	172, 223
XceI	RCATGY	1 cut(s)	488
XhoI	CTCGAG	1 cut(s)	503
ZraI	GACGTC	2 cut(s)	25, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.