Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015497.1

Orthogroup ID

OG0003607

Physical Location & Seq

Genomic Coordinates Reverse (-)

15421 .. 18628

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015497.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggctaccgtggtgttggacgacgccgtttcgggtggcggtggaggaggccgggcgggatgcatgacgagccacgacgtcgtcggtggagggagcttggagagctaccggtactacgtgtctcgtcgtacggggatggagatgctgagcgaccgaggctacaacgtcgccgactcggccctcactcgctcgctcactgagttccgtaccgcgttcggccaaaaccctgacctcgaccgcctcaccatctgcgcctctctccgctccaattccaagaacaagattatggtcatcttctgtggaactgatgaaatcagaaaggcgagtatctctgaactgctggtcaatgttacaaagcatgttttacagccaaagtatgagatactttctgctaaagaaaagaaacatctgctaaggaagtacaagttggaagacaagaagctccctctcatgctggaaaccgatgcatttgcacgctactatggattggagaagggacaggtggtaaagattacttaccgtggtggagctgttggtgccctcaaaacttaccgttgcattgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0030880 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0055029 GO:0061695 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

188

Amino Acids

20.74

Weight (kDa)

9.41

Isoelectric Point (pI)

27.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54490
fragaria_vesca	FvH4_7g02710 FvH4_7g02710 FvH4_7g02710
malus_domestica	MD07G1036700.v1.1
prunus_persica	Prupe.2G032100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321871 RchiOBHm_Chr1g0321951 RchiOBHm_Chr3g0472601
rosa_laevigata	RLG00000030400 RLG00000030402
rosa_multiflora	Rmu_sc0000427.1_g000005 Rmu_sc0002872.1_g000006 Rmu_sc0003510.1_g000023 Rmu_sc0015497.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327410 Rroxscaffold_4G00327450
rosa_rugosa	Rorug01G0034400
rosa_samantha	Rh1AG047300 Rh1BG045400 Rh1CG051100 Rh1CG051500 Rh1DG055400 Rh1DG055800 Rh2CG536300 Rh3AG178800 Rh3BG204700 Rh3CG202100 Rh3CG224200 Rh5AG112100 Rh6AG330000
rosa_wichuraiana	Rw1G004250 Rw1G004290 Rw1G004310 Rw5G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	536
AccBSI	CCGCTC	1 cut(s)	264
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	39, 56, 210, 238, 262
AcoI	YGGCCR	1 cut(s)	217
AcyI	GRCGYC	2 cut(s)	24, 78
AfaI	GTAC	4 cut(s)	113, 130, 208, 422
AflIII	ACRYGT	1 cut(s)	117
AgeI	ACCGGT	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	4 cut(s)	96, 105, 442, 530
AluI	AGCT	4 cut(s)	96, 105, 442, 530
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	3 cut(s)	49, 177, 217
AsiGI	ACCGGT	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	438
BccI	CCATC	2 cut(s)	130, 254
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	176
BlpI	GCTNAGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	3 cut(s)	50, 132, 454
BpiI	GAAGAC	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	413
Bpu1102I	GCTNAGC	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	118
BsaHI	GRCGYC	2 cut(s)	24, 78
BsaJI	CCNNGG	3 cut(s)	9, 154, 520
BsaWI	WCCGGW	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	9, 154, 520
BseGI	GGATG	2 cut(s)	65, 141
BseMII	CTCAG	2 cut(s)	137, 189
BseRI	GAGGAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	541
Bsh1236I	CGCG	1 cut(s)	212
Bsh1285I	CGRYCG	2 cut(s)	154, 238
BshFI	GGCC	3 cut(s)	51, 179, 219
BshNI	GGYRCC	1 cut(s)	536
BshTI	ACCGGT	1 cut(s)	108
BsiEI	CGRYCG	2 cut(s)	154, 238
BsiSI	CCGG	2 cut(s)	52, 109
BsiWI	CGTACG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	51, 179, 219
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	5 cut(s)	39, 56, 210, 238, 262
BspANI	GGCC	3 cut(s)	51, 179, 219
BspCNI	CTCAG	2 cut(s)	138, 190
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	538
BspT107I	GGYRCC	1 cut(s)	536
BsrBI	CCGCTC	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	108
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	3 cut(s)	9, 154, 520
BssNI	GRCGYC	2 cut(s)	24, 78
Bst4CI	ACNGT	3 cut(s)	10, 521, 554
BstACI	GRCGYC	2 cut(s)	24, 78
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	191, 475
BstDEI	CTNAG	3 cut(s)	146, 198, 413
BstDSI	CCRYGG	2 cut(s)	9, 520
BstF5I	GGATG	2 cut(s)	65, 141
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	254
BstMAI	GTCTC	1 cut(s)	126
BstMCI	CGRYCG	2 cut(s)	154, 238
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 102, 156, 176, 536
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	541
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	51, 179, 219
BtgI	CCRYGG	2 cut(s)	9, 520
BtsCI	GGATG	2 cut(s)	65, 141
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	191, 475
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	4 cut(s)	112, 129, 207, 421
CspAI	ACCGGT	1 cut(s)	108
CviAII	CATG	3 cut(s)	64, 359, 451
CviQI	GTAC	4 cut(s)	112, 129, 207, 421
DdeI	CTNAG	3 cut(s)	146, 198, 413
EaeI	YGGCCR	1 cut(s)	217
EcoT22I	ATGCAT	2 cut(s)	65, 469
FaeI	CATG	3 cut(s)	67, 362, 454
FaiI	YATR	6 cut(s)	65, 287, 360, 378, 452, 483
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	3 cut(s)	63, 358, 450
FauI	CCCGC	1 cut(s)	49
FokI	GGATG	2 cut(s)	72, 148
GlaI	GCGC	1 cut(s)	253
HaeIII	GGCC	3 cut(s)	51, 179, 219
HapII	CCGG	2 cut(s)	52, 109
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	2 cut(s)	24, 78
Hin1II	CATG	3 cut(s)	67, 362, 454
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	2 cut(s)	52, 109
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	317, 334, 566
Hpy99I	CGWCG	6 cut(s)	26, 80, 83, 86, 129, 170
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	3 cut(s)	10, 521, 554
HpyCH4IV	ACGT	3 cut(s)	78, 117, 165
HpyCH4V	TGCA	4 cut(s)	63, 467, 473, 558
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 102, 156, 176, 536
HpyF3I	CTNAG	3 cut(s)	146, 198, 413
HpySE526I	ACGT	3 cut(s)	78, 117, 165
Hsp92I	GRCGYC	2 cut(s)	24, 78
Hsp92II	CATG	3 cut(s)	67, 362, 454
HspAI	GCGC	1 cut(s)	252
LmnI	GCTCC	4 cut(s)	93, 269, 447, 527
LpnPI	CCDG	6 cut(s)	65, 122, 240, 326, 440, 485
LweI	GCATC	3 cut(s)	50, 132, 454
MaeII	ACGT	3 cut(s)	78, 117, 165
MaeIII	GTNAC	1 cut(s)	349
MbiI	CCGCTC	1 cut(s)	264
MboII	GAAGA	2 cut(s)	286, 443
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	1 cut(s)	268
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	408
Mph1103I	ATGCAT	2 cut(s)	65, 469
MspI	CCGG	2 cut(s)	52, 109
MspR9I	CCNGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	5 cut(s)	69, 102, 156, 176, 536
NciI	CCSGG	1 cut(s)	53
NlaIII	CATG	3 cut(s)	67, 362, 454
NlaIV	GGNNCC	1 cut(s)	538
NmeAIII	GCCGAG	1 cut(s)	155
NsiI	ATGCAT	2 cut(s)	65, 469
NspI	RCATGY	1 cut(s)	362
Pfl23II	CGTACG	1 cut(s)	128
PflFI	GACNNNGTC	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	108
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	118
PspLI	CGTACG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	538
PspPI	GGNCC	1 cut(s)	178
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	4 cut(s)	113, 130, 208, 422
RsaNI	GTAC	4 cut(s)	112, 129, 207, 421
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	541
SetI	ASST	9 cut(s)	81, 98, 107, 120, 168, 234, 444, 504, 532
SfaNI	GCATC	3 cut(s)	50, 132, 454
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	5 cut(s)	39, 56, 210, 238, 262
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	10, 521, 554
TaiI	ACGT	3 cut(s)	81, 120, 168
TaqI	TCGA	1 cut(s)	234
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	1 cut(s)	268
TatI	WGTACW	1 cut(s)	420
TscAI	CASTG	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	324
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	202
Tth111I	GACNNNGTC	1 cut(s)	80
XceI	RCATGY	1 cut(s)	362
ZraI	GACGTC	1 cut(s)	79
Zsp2I	ATGCAT	2 cut(s)	65, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.