E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g08751 |
| malus_domestica | MD12G1109100.v1.1 |
| prunus_persica | Prupe.7G127600_v2.0.a1 Prupe.7G127600_v2.0.a1 Prupe.7G127600_v2.0.a1 Prupe.7G127600_v2.0.a1 |
| pyrus_communis | pycom12g10930 |
| rosa_laevigata | RLG00000028936 |
| rosa_multiflora | Rmu_sc0016741.1_g000002 Rmu_ssc0000434.1_g000022 |
| rosa_roxburghii | Rroxscaffold_4G00310140 |
| rosa_rugosa | Rorug01G0170800 |
| rosa_samantha | Rh1AG187600 Rh1BG153700 Rh1CG173000 Rh1DG185800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 71 |
| AccIII | TCCGGA | 2 cut(s) | 32, 145 |
| AciI | CCGC | 4 cut(s) | 71, 74, 246, 375 |
| AfaI | GTAC | 2 cut(s) | 5, 49 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 145, 149 |
| AflIII | ACRYGT | 1 cut(s) | 250 |
| AgeI | ACCGGT | 1 cut(s) | 367 |
| AgsI | TTSAA | 1 cut(s) | 287 |
| AjiI | CACGTC | 2 cut(s) | 318, 346 |
| Alw26I | GTCTC | 1 cut(s) | 532 |
| Aor13HI | TCCGGA | 2 cut(s) | 32, 145 |
| AoxI | GGCC | 1 cut(s) | 297 |
| ApeKI | GCWGC | 1 cut(s) | 129 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 240, 272 |
| AsiGI | ACCGGT | 1 cut(s) | 367 |
| AspS9I | GGNCC | 1 cut(s) | 172 |
| AsuHPI | GGTGA | 1 cut(s) | 357 |
| AvaII | GGWCC | 1 cut(s) | 172 |
| BaeGI | GKGCMC | 1 cut(s) | 182 |
| BbvI | GCAGC | 1 cut(s) | 116 |
| BccI | CCATC | 2 cut(s) | 71, 273 |
| BceAI | ACGGC | 2 cut(s) | 166, 181 |
| BciVI | GTATCC | 1 cut(s) | 382 |
| BcoDI | GTCTC | 1 cut(s) | 532 |
| BfaI | CTAG | 1 cut(s) | 236 |
| BfuI | GTATCC | 1 cut(s) | 382 |
| BisI | GCNGC | 2 cut(s) | 72, 130 |
| BlsI | GCNGC | 2 cut(s) | 73, 131 |
| Bme18I | GGWCC | 1 cut(s) | 172 |
| BmgBI | CACGTC | 2 cut(s) | 318, 346 |
| BmgT120I | GGNCC | 1 cut(s) | 172 |
| BmsI | GCATC | 2 cut(s) | 371, 450 |
| BpuEI | CTTGAG | 1 cut(s) | 437 |
| BsaWI | WCCGGW | 3 cut(s) | 32, 145, 367 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 145, 149 |
| Bse118I | RCCGGY | 1 cut(s) | 367 |
| Bse1I | ACTGG | 2 cut(s) | 175, 262 |
| BseAI | TCCGGA | 2 cut(s) | 32, 145 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 145, 149 |
| BseMII | CTCAG | 2 cut(s) | 414, 428 |
| BseNI | ACTGG | 2 cut(s) | 175, 262 |
| BseSI | GKGCMC | 1 cut(s) | 182 |
| BseXI | GCAGC | 1 cut(s) | 116 |
| BseYI | CCCAGC | 1 cut(s) | 138 |
| Bsh1236I | CGCG | 1 cut(s) | 71 |
| BshFI | GGCC | 1 cut(s) | 299 |
| BshTI | ACCGGT | 1 cut(s) | 367 |
| BsiSI | CCGG | 3 cut(s) | 33, 146, 368 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 145, 149 |
| BsmAI | GTCTC | 1 cut(s) | 532 |
| BsmI | GAATGC | 2 cut(s) | 69, 433 |
| BsnI | GGCC | 1 cut(s) | 299 |
| Bsp1286I | GDGCHC | 1 cut(s) | 182 |
| Bsp13I | TCCGGA | 2 cut(s) | 32, 145 |
| BspACI | CCGC | 4 cut(s) | 71, 74, 246, 375 |
| BspANI | GGCC | 1 cut(s) | 299 |
| BspCNI | CTCAG | 2 cut(s) | 415, 429 |
| BspEI | TCCGGA | 2 cut(s) | 32, 145 |
| BspFNI | CGCG | 1 cut(s) | 71 |
| BsrFI | RCCGGY | 1 cut(s) | 367 |
| BsrI | ACTGG | 2 cut(s) | 175, 262 |
| BssAI | RCCGGY | 1 cut(s) | 367 |
| BstC8I | GCNNGC | 1 cut(s) | 69 |
| BstDEI | CTNAG | 2 cut(s) | 423, 437 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstFNI | CGCG | 1 cut(s) | 71 |
| BstMAI | GTCTC | 1 cut(s) | 532 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 186, 267, 428 |
| BstNSI | RCATGY | 1 cut(s) | 254 |
| BstSLI | GKGCMC | 1 cut(s) | 182 |
| BstUI | CGCG | 1 cut(s) | 71 |
| BstV1I | GCAGC | 1 cut(s) | 116 |
| BsuI | GTATCC | 1 cut(s) | 382 |
| BsuRI | GGCC | 1 cut(s) | 299 |
| BtrI | CACGTC | 2 cut(s) | 318, 346 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 1 cut(s) | 182 |
| Cac8I | GCNNGC | 1 cut(s) | 69 |
| Cfr10I | RCCGGY | 1 cut(s) | 367 |
| Cfr13I | GGNCC | 1 cut(s) | 172 |
| Csp6I | GTAC | 2 cut(s) | 4, 48 |
| CspAI | ACCGGT | 1 cut(s) | 367 |
| CviAII | CATG | 3 cut(s) | 243, 251, 535 |
| CviJI | RGCY | 7 cut(s) | 142, 153, 196, 239, 299, 422, 452 |
| CviKI_1 | RGCY | 7 cut(s) | 142, 153, 196, 239, 299, 422, 452 |
| CviQI | GTAC | 2 cut(s) | 4, 48 |
| DdeI | CTNAG | 2 cut(s) | 423, 437 |
| EciI | GGCGGA | 2 cut(s) | 89, 364 |
| Eco32I | GATATC | 1 cut(s) | 38 |
| Eco47I | GGWCC | 1 cut(s) | 172 |
| EcoRV | GATATC | 1 cut(s) | 38 |
| EcoT22I | ATGCAT | 2 cut(s) | 364, 465 |
| FaeI | CATG | 3 cut(s) | 246, 254, 538 |
| FatI | CATG | 3 cut(s) | 242, 250, 534 |
| Fnu4HI | GCNGC | 2 cut(s) | 72, 130 |
| FokI | GGATG | 1 cut(s) | 89 |
| Fsp4HI | GCNGC | 2 cut(s) | 72, 130 |
| FspBI | CTAG | 1 cut(s) | 236 |
| GluI | GCNGC | 2 cut(s) | 72, 130 |
| GsaI | CCCAGC | 1 cut(s) | 142 |
| HaeIII | GGCC | 1 cut(s) | 299 |
| HapII | CCGG | 3 cut(s) | 33, 146, 368 |
| Hin1II | CATG | 3 cut(s) | 246, 254, 538 |
| HinfI | GANTC | 1 cut(s) | 228 |
| HpaII | CCGG | 3 cut(s) | 33, 146, 368 |
| HphI | GGTGA | 1 cut(s) | 357 |
| Hpy188I | TCNGA | 2 cut(s) | 315, 438 |
| Hpy188III | TCNNGA | 2 cut(s) | 33, 146 |
| Hpy99I | CGWCG | 3 cut(s) | 169, 319, 383 |
| HpyAV | CCTTC | 3 cut(s) | 206, 334, 403 |
| HpyCH4IV | ACGT | 4 cut(s) | 116, 167, 317, 345 |
| HpyCH4V | TGCA | 7 cut(s) | 270, 321, 333, 362, 395, 463, 534 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 186, 267, 428 |
| HpyF3I | CTNAG | 2 cut(s) | 423, 437 |
| HpySE526I | ACGT | 4 cut(s) | 116, 167, 317, 345 |
| Hsp92II | CATG | 3 cut(s) | 246, 254, 538 |
| Kpn2I | TCCGGA | 2 cut(s) | 32, 145 |
| LpnPI | CCDG | 7 cut(s) | 46, 152, 159, 188, 275, 280, 381 |
| Lsp1109I | GCAGC | 1 cut(s) | 116 |
| LweI | GCATC | 2 cut(s) | 371, 450 |
| MaeI | CTAG | 1 cut(s) | 236 |
| MaeII | ACGT | 4 cut(s) | 116, 167, 317, 345 |
| MhlI | GDGCHC | 1 cut(s) | 182 |
| MlyI | GAGTC | 1 cut(s) | 237 |
| MmeI | TCCRAC | 2 cut(s) | 150, 338 |
| MnlI | CCTC | 5 cut(s) | 144, 153, 250, 412, 516 |
| Mph1103I | ATGCAT | 2 cut(s) | 364, 465 |
| MroI | TCCGGA | 2 cut(s) | 32, 145 |
| MseI | TTAA | 4 cut(s) | 42, 273, 390, 476 |
| MspI | CCGG | 3 cut(s) | 33, 146, 368 |
| Mva1269I | GAATGC | 2 cut(s) | 69, 433 |
| MvnI | CGCG | 1 cut(s) | 71 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 186, 267, 428 |
| NlaIII | CATG | 3 cut(s) | 246, 254, 538 |
| NsiI | ATGCAT | 2 cut(s) | 364, 465 |
| NspI | RCATGY | 1 cut(s) | 254 |
| PciI | ACATGT | 1 cut(s) | 250 |
| PctI | GAATGC | 2 cut(s) | 69, 433 |
| PinAI | ACCGGT | 1 cut(s) | 367 |
| PkrI | GCNGC | 2 cut(s) | 73, 131 |
| PleI | GAGTC | 1 cut(s) | 236 |
| PpsI | GAGTC | 1 cut(s) | 236 |
| PscI | ACATGT | 1 cut(s) | 250 |
| PspFI | CCCAGC | 1 cut(s) | 138 |
| PspPI | GGNCC | 1 cut(s) | 172 |
| RsaI | GTAC | 2 cut(s) | 5, 49 |
| RsaNI | GTAC | 2 cut(s) | 4, 48 |
| SaqAI | TTAA | 4 cut(s) | 42, 273, 390, 476 |
| SatI | GCNGC | 2 cut(s) | 72, 130 |
| Sau96I | GGNCC | 1 cut(s) | 172 |
| SchI | GAGTC | 1 cut(s) | 237 |
| SduI | GDGCHC | 1 cut(s) | 182 |
| SetI | ASST | 4 cut(s) | 119, 170, 320, 348 |
| SfaNI | GCATC | 2 cut(s) | 371, 450 |
| SinI | GGWCC | 1 cut(s) | 172 |
| SmlI | CTYRAG | 1 cut(s) | 416 |
| SmoI | CTYRAG | 1 cut(s) | 416 |
| SsiI | CCGC | 4 cut(s) | 71, 74, 246, 375 |
| SspMI | CTAG | 1 cut(s) | 236 |
| TaiI | ACGT | 4 cut(s) | 119, 170, 320, 348 |
| TaqI | TCGA | 1 cut(s) | 164 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TauI | GCSGC | 1 cut(s) | 74 |
| Tru1I | TTAA | 4 cut(s) | 42, 273, 390, 476 |
| Tru9I | TTAA | 4 cut(s) | 42, 273, 390, 476 |
| TscAI | CASTG | 1 cut(s) | 182 |
| TseI | GCWGC | 1 cut(s) | 129 |
| TspDTI | ATGAA | 1 cut(s) | 225 |
| TspRI | CASTG | 1 cut(s) | 182 |
| VpaK11BI | GGWCC | 1 cut(s) | 172 |
| XceI | RCATGY | 1 cut(s) | 254 |
| XspI | CTAG | 1 cut(s) | 236 |
| Zsp2I | ATGCAT | 2 cut(s) | 364, 465 |