FvH4_7g10780

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016917
Physical Location & Seq
Reverse (-)
10121267 .. 10123974
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10780.t1

Sequence Viewer

Length: 1047 bp
ATGTTGTCCGGAGGAAGAATGAGCTCAAACCTGTCTGATAACTCGAAGACCACCAAAGCCAACATTAATGGATCTCCCATGTCAGCCAGAACCTTCAAAAGCTCGGCAAAGATGACCAGTAAGGTGACGCCTCGTGTTGCCGCAGGCGGCTCCACTTGGAGCATGACTCCTCTGATGGAGGTTTTGCCTGGCTCTTCCCCACCTGCTGGTAGCAGCAGCTCAAGCCCTATCAGCCCTTTGAGCTCCAAGACTTGCTCTCCCAAATCAGAGAAGACTCAATTCTTCTCTGACTTGCCTACAAACGCGTCCACAAGATTAAACCAGGAAGGGTTGGAGATTAATGCCAAAGACTTTGGCCGGCTCTGTCTCACCAATTTCCAGGCCAATCCTCACAAGGGTTCCTGCCTGAGCAAGCTATCAATGACCGATACCTCATCCTCTCCTCACCATGAAATTGTTGGGCACCAATCAAACTCAGAGAGAGACGAGAGGTCTGTTGATGAAGAGGATAGCCATTTGGCACAAGGTGAGCAGAGCACAAATGAAGACTCGGATTGCGAAAGCCCGATTGCCGGACGAGATAAGCTGATGGATCGGCCGAAGCCGTACCATGAGTTCTTGGATGAAGTCAAGAAGCAGGAGCTGCAGGCTGAGGTTGAGGCATGGAAGAAAGCTGAGCAGATGAAGCTTATGACCAAGTTGAGACAAGAAGAAGCTGCCATTGAGGAATGGGAATTCAAGCAGACCAGCAAGGCCTTGAAGGACATCAAAAAGCTTGAGATTAAGCTGGAGAAGCAACGTGCAAAAGCAGTTGAGAACACATGGAAGAAAATAAACATGACCAAAGAGGAGGCAAACAAGAAGAAGATACGAGCCAGGCAATGTACAATCGGAAGACTCTCAGAGGTATCGGAAAATTCTCAGAAGCCCTACTCCACCAAGACCGTAGTGTGGAACAAACTCACTGTTTACTGCAAGACCATTTACTTCAAATCCGTGCGAGGCAAGGCGCCAACATCATCAGAACGGCAAAGGTCGTTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

349

Amino Acids

38.83

Weight (kDa)

9.34

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 214 - 317 5.5e-13 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016917)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10780
malus_domestica MD02G1214400.v1.1
prunus_persica Prupe.2G136000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348721
rosa_laevigata RLG00000028627
rosa_multiflora Rmu_co8483933.1_g000001 Rmu_sc0001674.1_g000009
rosa_roxburghii Rroxscaffold_4G00306710
rosa_rugosa Rorug01G0197400
rosa_samantha Rh1AG214500 Rh1BG181100 Rh1CG199200 Rh1DG211100
rosa_wichuraiana Rw1G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 211
Acc36I ACCTGC 1 cut(s) 211
AccB1I GGYRCC 2 cut(s) 462, 1009
AccB7I CCANNNNNTGG 1 cut(s) 206
AccII CGCG 1 cut(s) 305
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 2 cut(s) 141, 147
AclWI GGATC 2 cut(s) 79, 600
AcoI YGGCCR 2 cut(s) 355, 596
AcsI RAATTY 2 cut(s) 734, 916
AcyI GRCGYC 2 cut(s) 128, 1010
AdeI CACNNNGTG 1 cut(s) 527
AfaI GTAC 2 cut(s) 608, 886
AfiI CCNNNNNNNGG 4 cut(s) 206, 395, 572, 951
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 4 cut(s) 97, 739, 760, 991
AhdI GACNNNNNGTC 1 cut(s) 490
AjnI CCWGG 4 cut(s) 187, 321, 378, 875
Alw21I GWGCWC 3 cut(s) 26, 245, 539
Alw26I GTCTC 3 cut(s) 371, 477, 697
AlwI GGATC 2 cut(s) 79, 600
AlwNI CAGNNNCTG 1 cut(s) 643
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 4 cut(s) 355, 381, 596, 753
ApeKI GCWGC 4 cut(s) 213, 216, 643, 716
ApoI RAATTY 2 cut(s) 734, 916
AseI ATTAAT 2 cut(s) 66, 339
AspLEI GCGC 1 cut(s) 1012
AsuHPI GGTGA 4 cut(s) 136, 361, 437, 539
BaeGI GKGCMC 1 cut(s) 465
BanI GGYRCC 2 cut(s) 462, 1009
BanII GRGCYC 2 cut(s) 26, 245
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 4 cut(s) 53, 278, 552, 901
Bbv12I GWGCWC 3 cut(s) 26, 245, 539
BbvCI CCTCAGC 1 cut(s) 651
BbvI GCAGC 4 cut(s) 225, 228, 630, 703
BccI CCATC 2 cut(s) 169, 583
BceAI ACGGC 2 cut(s) 589, 1043
BciT130I CCWGG 4 cut(s) 189, 323, 380, 877
BcoDI GTCTC 3 cut(s) 371, 477, 697
BfmI CTRYAG 1 cut(s) 644
BfoI RGCGCY 1 cut(s) 1013
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 6 cut(s) 141, 148, 214, 217, 644, 717
BlpI GCTNAGC 1 cut(s) 675
BlsI GCNGC 6 cut(s) 142, 149, 215, 218, 645, 718
Bme1390I CCNGG 4 cut(s) 189, 323, 380, 877
BmeRI GACNNNNNGTC 1 cut(s) 490
BmiI GGNNCC 4 cut(s) 151, 400, 464, 1011
BmrFI CCNGG 4 cut(s) 189, 323, 380, 877
BpiI GAAGAC 4 cut(s) 53, 278, 552, 901
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BpmI CTGGAG 1 cut(s) 809
Bpu10I CCTNAGC 2 cut(s) 407, 651
Bpu1102I GCTNAGC 1 cut(s) 675
BpuEI CTTGAG 2 cut(s) 205, 797
BsaHI GRCGYC 2 cut(s) 128, 1010
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 395, 572, 951
Bse118I RCCGGY 1 cut(s) 357
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 887
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 4 cut(s) 189, 323, 380, 877
BseGI GGATG 2 cut(s) 434, 628
BseLI CCNNNNNNNGG 4 cut(s) 206, 395, 572, 951
BseMI GCAATG 1 cut(s) 887
BseMII CTCAG 6 cut(s) 398, 489, 642, 666, 915, 935
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 3 cut(s) 159, 432, 863
BseSI GKGCMC 1 cut(s) 465
BseX3I CGGCCG 1 cut(s) 596
BseXI GCAGC 4 cut(s) 225, 228, 630, 703
Bsh1236I CGCG 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 599
BshFI GGCC 4 cut(s) 357, 383, 598, 755
BshNI GGYRCC 2 cut(s) 462, 1009
BsiEI CGRYCG 1 cut(s) 599
BsiHKAI GWGCWC 3 cut(s) 26, 245, 539
BsiSI CCGG 3 cut(s) 9, 358, 573
BslI CCNNNNNNNGG 4 cut(s) 206, 395, 572, 951
BsmAI GTCTC 3 cut(s) 371, 477, 697
BsmBI CGTCTC 1 cut(s) 477
BsnI GGCC 4 cut(s) 357, 383, 598, 755
Bsp1286I GDGCHC 4 cut(s) 26, 245, 465, 539
Bsp13I TCCGGA 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 884
Bsp143I GATC 2 cut(s) 71, 592
Bsp1720I GCTNAGC 1 cut(s) 675
BspACI CCGC 2 cut(s) 141, 147
BspANI GGCC 4 cut(s) 357, 383, 598, 755
BspCNI CTCAG 6 cut(s) 399, 488, 643, 667, 914, 934
BspEI TCCGGA 1 cut(s) 8
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 4 cut(s) 151, 400, 464, 1011
BspMAI CTGCAG 1 cut(s) 648
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 2 cut(s) 79, 600
BspQI GCTCTTC 1 cut(s) 199
BspT107I GGYRCC 2 cut(s) 462, 1009
BsrDI GCAATG 1 cut(s) 887
BsrFI RCCGGY 1 cut(s) 357
BsrGI TGTACA 1 cut(s) 884
BsrI ACTGG 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 357
BssMI GATC 2 cut(s) 71, 592
BssNI GRCGYC 2 cut(s) 128, 1010
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 4 cut(s) 189, 323, 380, 877
Bst4CI ACNGT 2 cut(s) 946, 967
Bst6I CTCTTC 2 cut(s) 199, 498
BstACI GRCGYC 2 cut(s) 128, 1010
BstAPI GCANNNNNTGC 1 cut(s) 643
BstAUI TGTACA 1 cut(s) 884
BstC8I GCNNGC 4 cut(s) 145, 359, 413, 648
BstDEI CTNAG 6 cut(s) 407, 475, 651, 675, 901, 921
BstF5I GGATG 2 cut(s) 434, 628
BstFNI CGCG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 1013
BstHHI GCGC 1 cut(s) 1012
BstKTI GATC 2 cut(s) 74, 595
BstMAI GTCTC 3 cut(s) 371, 477, 697
BstMBI GATC 2 cut(s) 71, 592
BstMCI CGRYCG 1 cut(s) 599
BstMWI GCNNNNNNNGC 6 cut(s) 222, 231, 240, 643, 685, 793
BstNI CCWGG 4 cut(s) 189, 323, 380, 877
BstSCI CCNGG 4 cut(s) 187, 321, 378, 875
BstSFI CTRYAG 1 cut(s) 644
BstSLI GKGCMC 1 cut(s) 465
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 4 cut(s) 225, 228, 630, 703
BstV2I GAAGAC 4 cut(s) 53, 278, 552, 901
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BstZI CGGCCG 1 cut(s) 596
BsuRI GGCC 4 cut(s) 357, 383, 598, 755
BtsCI GGATG 2 cut(s) 434, 628
BtsIMutI CAGTG 1 cut(s) 963
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 4 cut(s) 145, 359, 413, 648
CaiI CAGNNNCTG 1 cut(s) 643
CfoI GCGC 1 cut(s) 1012
Cfr10I RCCGGY 1 cut(s) 357
CseI GACGC 2 cut(s) 136, 294
Csp6I GTAC 2 cut(s) 607, 885
CviAII CATG 7 cut(s) 79, 163, 449, 611, 663, 822, 838
CviQI GTAC 2 cut(s) 607, 885
DdeI CTNAG 6 cut(s) 407, 475, 651, 675, 901, 921
DinI GGCGCC 1 cut(s) 1011
DpnI GATC 2 cut(s) 73, 594
DpnII GATC 2 cut(s) 71, 592
DraIII CACNNNGTG 1 cut(s) 527
DriI GACNNNNNGTC 1 cut(s) 490
EaeI YGGCCR 2 cut(s) 355, 596
EagI CGGCCG 1 cut(s) 596
Eam1104I CTCTTC 2 cut(s) 199, 498
Eam1105I GACNNNNNGTC 1 cut(s) 490
EarI CTCTTC 2 cut(s) 199, 498
Ecl136II GAGCTC 2 cut(s) 24, 243
EclXI CGGCCG 1 cut(s) 596
Eco147I AGGCCT 1 cut(s) 755
Eco24I GRGCYC 2 cut(s) 26, 245
Eco52I CGGCCG 1 cut(s) 596
Eco53kI GAGCTC 2 cut(s) 24, 243
EcoICRI GAGCTC 2 cut(s) 24, 243
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 4 cut(s) 187, 321, 378, 875
EcoT38I GRGCYC 2 cut(s) 26, 245
EgeI GGCGCC 1 cut(s) 1011
EheI GGCGCC 1 cut(s) 1011
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 7 cut(s) 82, 166, 452, 614, 666, 825, 841
FaiI YATR 8 cut(s) 80, 164, 450, 612, 664, 692, 823, 839
FatI CATG 7 cut(s) 78, 162, 448, 610, 662, 821, 837
Fnu4HI GCNGC 6 cut(s) 141, 148, 214, 217, 644, 717
FokI GGATG 2 cut(s) 421, 635
FriOI GRGCYC 2 cut(s) 26, 245
Fsp4HI GCNGC 6 cut(s) 141, 148, 214, 217, 644, 717
GlaI GCGC 1 cut(s) 1011
GluI GCNGC 6 cut(s) 141, 148, 214, 217, 644, 717
GsuI CTGGAG 1 cut(s) 809
HaeII RGCGCY 1 cut(s) 1013
HaeIII GGCC 4 cut(s) 357, 383, 598, 755
HapII CCGG 3 cut(s) 9, 358, 573
HgaI GACGC 2 cut(s) 136, 294
HhaI GCGC 1 cut(s) 1012
Hin1I GRCGYC 2 cut(s) 128, 1010
Hin1II CATG 7 cut(s) 82, 166, 452, 614, 666, 825, 841
Hin6I GCGC 1 cut(s) 1010
HinP1I GCGC 1 cut(s) 1010
HindIII AAGCTT 2 cut(s) 686, 773
HinfI GANTC 4 cut(s) 166, 274, 548, 897
HpaII CCGG 3 cut(s) 9, 358, 573
HphI GGTGA 4 cut(s) 136, 361, 437, 539
Hpy166II GTNNAC 2 cut(s) 309, 970
Hpy188III TCNNGA 2 cut(s) 9, 631
Hpy8I GTNNAC 2 cut(s) 309, 970
HpyAV CCTTC 3 cut(s) 103, 320, 754
HpyCH4III ACNGT 2 cut(s) 946, 967
HpyCH4IV ACGT 1 cut(s) 799
HpyCH4V TGCA 3 cut(s) 646, 803, 975
HpyF10VI GCNNNNNNNGC 6 cut(s) 222, 231, 240, 643, 685, 793
HpyF3I CTNAG 6 cut(s) 407, 475, 651, 675, 901, 921
HpySE526I ACGT 1 cut(s) 799
Hsp92I GRCGYC 2 cut(s) 128, 1010
Hsp92II CATG 7 cut(s) 82, 166, 452, 614, 666, 825, 841
HspAI GCGC 1 cut(s) 1010
KasI GGCGCC 1 cut(s) 1009
Kpn2I TCCGGA 1 cut(s) 8
KroI GCCGGC 1 cut(s) 357
KroNI GCCGGC 1 cut(s) 359
Kzo9I GATC 2 cut(s) 71, 592
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 4 cut(s) 155, 159, 248, 640
Lsp1109I GCAGC 4 cut(s) 225, 228, 630, 703
MaeII ACGT 1 cut(s) 799
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 73, 594
MboI GATC 2 cut(s) 71, 592
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 4 cut(s) 26, 245, 465, 539
MluCI AATT 5 cut(s) 278, 373, 453, 734, 916
MluI ACGCGT 1 cut(s) 303
Mly113I GGCGCC 1 cut(s) 1010
MlyI GAGTC 4 cut(s) 160, 268, 542, 891
MmeI TCCRAC 1 cut(s) 312
MroI TCCGGA 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 357
MseI TTAA 5 cut(s) 66, 317, 339, 783, 1040
MspI CCGG 3 cut(s) 9, 358, 573
MspR9I CCNGG 4 cut(s) 189, 323, 380, 877
MvaI CCWGG 4 cut(s) 189, 323, 380, 877
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 6 cut(s) 222, 231, 240, 643, 685, 793
NaeI GCCGGC 1 cut(s) 359
NarI GGCGCC 1 cut(s) 1010
NdeII GATC 2 cut(s) 71, 592
NgoMIV GCCGGC 1 cut(s) 357
NlaIII CATG 7 cut(s) 82, 166, 452, 614, 666, 825, 841
NlaIV GGNNCC 4 cut(s) 151, 400, 464, 1011
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 124
PaqCI CACCTGC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 755
PciSI GCTCTTC 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 6 cut(s) 142, 149, 215, 218, 645, 718
PleI GAGTC 4 cut(s) 160, 268, 542, 891
PluTI GGCGCC 1 cut(s) 1013
PpsI GAGTC 4 cut(s) 160, 268, 542, 891
PshBI ATTAAT 2 cut(s) 66, 339
Psp124BI GAGCTC 2 cut(s) 26, 245
Psp6I CCWGG 4 cut(s) 187, 321, 378, 875
PspGI CCWGG 4 cut(s) 187, 321, 378, 875
PspN4I GGNNCC 4 cut(s) 151, 400, 464, 1011
PsrI GAACNNNNNNTAC 2 cut(s) 599, 631
PstI CTGCAG 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 643
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 2 cut(s) 608, 886
RsaNI GTAC 2 cut(s) 607, 885
SacI GAGCTC 2 cut(s) 26, 245
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 5 cut(s) 66, 317, 339, 783, 1040
SatI GCNGC 6 cut(s) 141, 148, 214, 217, 644, 717
Sau3AI GATC 2 cut(s) 71, 592
SchI GAGTC 4 cut(s) 160, 268, 542, 891
ScrFI CCNGG 4 cut(s) 189, 323, 380, 877
SduI GDGCHC 4 cut(s) 26, 245, 465, 539
SfcI CTRYAG 1 cut(s) 644
SfoI GGCGCC 1 cut(s) 1011
SmlI CTYRAG 2 cut(s) 220, 776
SmoI CTYRAG 2 cut(s) 220, 776
Sse9I AATT 5 cut(s) 278, 373, 453, 734, 916
SseBI AGGCCT 1 cut(s) 755
SsiI CCGC 2 cut(s) 141, 147
SspDI GGCGCC 1 cut(s) 1009
SstI GAGCTC 2 cut(s) 26, 245
StuI AGGCCT 1 cut(s) 755
StyD4I CCNGG 4 cut(s) 187, 321, 378, 875
TaaI ACNGT 2 cut(s) 946, 967
TaiI ACGT 1 cut(s) 802
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 440
TasI AATT 5 cut(s) 278, 373, 453, 734, 916
TatI WGTACW 1 cut(s) 884
TauI GCSGC 2 cut(s) 143, 150
Tru1I TTAA 5 cut(s) 66, 317, 339, 783, 1040
Tru9I TTAA 5 cut(s) 66, 317, 339, 783, 1040
TscAI CASTG 1 cut(s) 970
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 4 cut(s) 213, 216, 643, 716
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 5 cut(s) 465, 516, 558, 639, 698
TspGWI ACGGA 1 cut(s) 985
TspRI CASTG 1 cut(s) 970
Van91I CCANNNNNTGG 1 cut(s) 206
VspI ATTAAT 2 cut(s) 66, 339
XapI RAATTY 2 cut(s) 734, 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.