Prupe.2G136000_v2.0.a1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016917
Physical Location & Seq
Reverse (-)
19372254 .. 19374260
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G136000.1

Sequence Viewer

Length: 825 bp
ATGATGTCCCAAACAAGAAAAAACCCAAGTTTCTCCAAAACCGACAGCATGAGGACGAAACCCAGCATGAGGACGAAACCCAGCATGATGAATCCCAAGGGGGCTGCTACGAAGTCGTCGGAGTTGAATAAAAACGATGACACTCGTTCCTTATCAGCCAGAACCTTCAAAAACTCAAAGGCAACTTGGAGCATGAACCCTCTCATGGATGCTTTGCCACGATCTCCACCACCAGGTTGTAGCAGTGGCCCACTTAGCAGCTCTGCAACTTTTTGCACTTTCAAGGCAGATAGTTTCTACTCTGACCTGCCCACTACTGAGCCTTCCACTCCAAGAACCCAGGAAAGGATGGAGAACTCCAAAGACTTTGGTCGTTTCTGTCACCCCAATTCGCAGAACAAAATTTCTAAAGGTTCCTGCCTGAGCAAGTTGTCAATGCGTGAAAGCATATTCTCAGATCCTCACCATGAATTTGATCATGGCCGGGAATCACCTTCAGAAAGAGAGAGAGAAGACAGCTCAGTTTATAATGAAGAGTATAAACATGTTGTACAGTCTGCTGATCAGAGCAGCCATGAAGAATCTGATGCTGATGAAAACCCAAACGCTGAAGGAGATAAGCAGCTGATGGATCGGCCAAAACCCTACCATGAATTCTTAGATGAGTTCAAGCAGCAGGAGCTCAAGGCTGAAATAGAAGCATGGACAAAGGCTGAGCATATGAGACTCGTGACCAAGTTGAGAGAAGAAGAGGCTGCTATAGACGACTGGGAATTCAAGCAGACCAGCAAGGCCTTGAAGGAGATTAAAAAGATTGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

275

Amino Acids

31.29

Weight (kDa)

6.12

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016917)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10780
malus_domestica MD02G1214400.v1.1
prunus_persica Prupe.2G136000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348721
rosa_laevigata RLG00000028627
rosa_multiflora Rmu_co8483933.1_g000001 Rmu_sc0001674.1_g000009
rosa_roxburghii Rroxscaffold_4G00306710
rosa_rugosa Rorug01G0197400
rosa_samantha Rh1AG214500 Rh1BG181100 Rh1CG199200 Rh1DG211100
rosa_wichuraiana Rw1G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
Acc36I ACCTGC 1 cut(s) 315
AclWI GGATC 2 cut(s) 452, 639
AcoI YGGCCR 2 cut(s) 481, 635
AcsI RAATTY 4 cut(s) 402, 470, 653, 773
AcuI CTGAAG 2 cut(s) 480, 630
AfaI GTAC 1 cut(s) 552
AfiI CCNNNNNNNGG 4 cut(s) 69, 205, 233, 345
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 6 cut(s) 127, 169, 283, 670, 778, 799
AjnI CCWGG 2 cut(s) 232, 339
AluBI AGCT 4 cut(s) 261, 519, 625, 682
AluI AGCT 4 cut(s) 261, 519, 625, 682
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 1 cut(s) 718
AlwI GGATC 2 cut(s) 452, 639
AoxI GGCC 4 cut(s) 247, 481, 635, 792
ApeKI GCWGC 6 cut(s) 104, 258, 570, 622, 673, 755
ApoI RAATTY 4 cut(s) 402, 470, 653, 773
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 3 cut(s) 374, 455, 483
BanII GRGCYC 1 cut(s) 684
BauI CACGAG 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 6 cut(s) 91, 270, 582, 634, 685, 742
BccI CCATC 2 cut(s) 343, 622
BciT130I CCWGG 2 cut(s) 234, 341
BclI TGATCA 2 cut(s) 475, 562
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 1 cut(s) 718
BfmI CTRYAG 1 cut(s) 759
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 6 cut(s) 105, 259, 571, 623, 674, 756
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 6 cut(s) 106, 260, 572, 624, 675, 757
Bme1390I CCNGG 3 cut(s) 234, 341, 485
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 3 cut(s) 234, 341, 485
BmrI ACTGGG 1 cut(s) 778
BmsI GCATC 2 cut(s) 199, 577
BmuI ACTGGG 1 cut(s) 778
BoxI GACNNNNGTC 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 422
Bpu1102I GCTNAGC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 485
BsaJI CCNNGG 2 cut(s) 96, 339
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 205, 233, 345
Bse1I ACTGG 1 cut(s) 773
BseBI CCWGG 2 cut(s) 234, 341
BseDI CCNNGG 2 cut(s) 96, 339
BseGI GGATG 2 cut(s) 214, 354
BseLI CCNNNNNNNGG 4 cut(s) 69, 205, 233, 345
BseMII CTCAG 5 cut(s) 309, 413, 468, 534, 705
BseNI ACTGG 1 cut(s) 773
BseXI GCAGC 6 cut(s) 91, 270, 582, 634, 685, 742
BseYI CCCAGC 2 cut(s) 62, 80
BshFI GGCC 4 cut(s) 249, 483, 637, 794
BsiHKAI GWGCWC 1 cut(s) 684
BsiSI CCGG 1 cut(s) 484
BslI CCNNNNNNNGG 4 cut(s) 69, 205, 233, 345
BsmAI GTCTC 1 cut(s) 718
BsnI GGCC 4 cut(s) 249, 483, 637, 794
Bsp1286I GDGCHC 1 cut(s) 684
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 5 cut(s) 221, 457, 475, 562, 631
Bsp1720I GCTNAGC 1 cut(s) 714
BspANI GGCC 4 cut(s) 249, 483, 637, 794
BspCNI CTCAG 5 cut(s) 310, 414, 467, 533, 706
BspLI GGNNCC 1 cut(s) 415
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 2 cut(s) 452, 639
BsrGI TGTACA 1 cut(s) 550
BsrI ACTGG 1 cut(s) 773
BssECI CCNNGG 2 cut(s) 96, 339
BssMI GATC 5 cut(s) 221, 457, 475, 562, 631
BssSI CACGAG 1 cut(s) 728
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 728
Bst2UI CCWGG 2 cut(s) 234, 341
Bst4CI ACNGT 1 cut(s) 555
Bst6I CTCTTC 2 cut(s) 528, 744
BstAUI TGTACA 1 cut(s) 550
BstDEI CTNAG 7 cut(s) 254, 318, 422, 454, 520, 658, 714
BstF5I GGATG 2 cut(s) 214, 354
BstKTI GATC 5 cut(s) 224, 460, 478, 565, 634
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 5 cut(s) 221, 457, 475, 562, 631
BstMWI GCNNNNNNNGC 2 cut(s) 255, 679
BstNI CCWGG 2 cut(s) 234, 341
BstNSI RCATGY 1 cut(s) 548
BstPAI GACNNNNGTC 1 cut(s) 369
BstSCI CCNGG 3 cut(s) 232, 339, 483
BstSFI CTRYAG 1 cut(s) 759
BstV1I GCAGC 6 cut(s) 91, 270, 582, 634, 685, 742
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 4 cut(s) 249, 483, 637, 794
BtsCI GGATG 2 cut(s) 214, 354
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 248
CsiI ACCWGGT 1 cut(s) 232
Csp6I GTAC 1 cut(s) 551
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 7 cut(s) 254, 318, 422, 454, 520, 658, 714
DpnI GATC 5 cut(s) 223, 459, 477, 564, 633
DpnII GATC 5 cut(s) 221, 457, 475, 562, 631
EaeI YGGCCR 2 cut(s) 481, 635
Eam1104I CTCTTC 2 cut(s) 528, 744
EarI CTCTTC 2 cut(s) 528, 744
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 794
Eco24I GRGCYC 1 cut(s) 684
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 480, 630
EcoICRI GAGCTC 1 cut(s) 682
EcoRI GAATTC 2 cut(s) 653, 773
EcoRII CCWGG 2 cut(s) 232, 339
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 96
FauNDI CATATG 1 cut(s) 720
FbaI TGATCA 2 cut(s) 475, 562
Fnu4HI GCNGC 6 cut(s) 105, 259, 571, 623, 674, 756
FokI GGATG 2 cut(s) 221, 361
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 6 cut(s) 105, 259, 571, 623, 674, 756
GluI GCNGC 6 cut(s) 105, 259, 571, 623, 674, 756
GsaI CCCAGC 2 cut(s) 66, 84
HaeIII GGCC 4 cut(s) 249, 483, 637, 794
HapII CCGG 1 cut(s) 484
HinfI GANTC 4 cut(s) 91, 488, 581, 726
HpaII CCGG 1 cut(s) 484
HphI GGTGA 3 cut(s) 374, 455, 483
Hpy188I TCNGA 6 cut(s) 121, 304, 457, 499, 567, 586
Hpy188III TCNNGA 1 cut(s) 730
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 5 cut(s) 175, 333, 504, 605, 793
HpyCH4III ACNGT 1 cut(s) 555
HpyCH4V TGCA 2 cut(s) 266, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 679
HpyF3I CTNAG 7 cut(s) 254, 318, 422, 454, 520, 658, 714
Ksp22I TGATCA 2 cut(s) 475, 562
Kzo9I GATC 5 cut(s) 221, 457, 475, 562, 631
LmnI GCTCC 2 cut(s) 189, 679
Lsp1109I GCAGC 6 cut(s) 91, 270, 582, 634, 685, 742
LweI GCATC 2 cut(s) 199, 577
MabI ACCWGGT 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 380, 730
MalI GATC 5 cut(s) 223, 459, 477, 564, 633
MboI GATC 5 cut(s) 221, 457, 475, 562, 631
MboII GAAGA 5 cut(s) 524, 545, 590, 758, 761
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 5 cut(s) 388, 402, 470, 653, 773
MlyI GAGTC 1 cut(s) 720
MmeI TCCRAC 1 cut(s) 99
MnlI CCTC 6 cut(s) 45, 63, 210, 471, 745, 811
MseI TTAA 1 cut(s) 807
MspA1I CMGCKG 1 cut(s) 625
MspI CCGG 1 cut(s) 484
MspR9I CCNGG 3 cut(s) 234, 341, 485
MvaI CCWGG 2 cut(s) 234, 341
MwoI GCNNNNNNNGC 2 cut(s) 255, 679
NciI CCSGG 1 cut(s) 485
NdeI CATATG 1 cut(s) 720
NdeII GATC 5 cut(s) 221, 457, 475, 562, 631
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 380, 730
NspI RCATGY 1 cut(s) 548
PceI AGGCCT 1 cut(s) 794
PciI ACATGT 1 cut(s) 544
PfeI GAWTC 3 cut(s) 91, 488, 581
PkrI GCNGC 6 cut(s) 106, 260, 572, 624, 675, 757
PleI GAGTC 1 cut(s) 720
PpsI GAGTC 1 cut(s) 720
PscI ACATGT 1 cut(s) 544
PshAI GACNNNNGTC 1 cut(s) 369
PsiI TTATAA 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 2 cut(s) 232, 339
PspFI CCCAGC 2 cut(s) 62, 80
PspGI CCWGG 2 cut(s) 232, 339
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 6 cut(s) 105, 259, 571, 623, 674, 756
Sau3AI GATC 5 cut(s) 221, 457, 475, 562, 631
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 3 cut(s) 234, 341, 485
SduI GDGCHC 1 cut(s) 684
SexAI ACCWGGT 1 cut(s) 232
SfaNI GCATC 2 cut(s) 199, 577
SfcI CTRYAG 1 cut(s) 759
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 5 cut(s) 388, 402, 470, 653, 773
SseBI AGGCCT 1 cut(s) 794
SstI GAGCTC 1 cut(s) 684
StuI AGGCCT 1 cut(s) 794
StyD4I CCNGG 3 cut(s) 232, 339, 483
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 555
TasI AATT 5 cut(s) 388, 402, 470, 653, 773
TatI WGTACW 1 cut(s) 550
TfiI GAWTC 3 cut(s) 91, 488, 581
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 380, 730
TseI GCWGC 6 cut(s) 104, 258, 570, 622, 673, 755
Tsp45I GTSAC 2 cut(s) 380, 730
TspDTI ATGAA 7 cut(s) 104, 209, 483, 546, 591, 609, 666
TspRI CASTG 1 cut(s) 250
XapI RAATTY 4 cut(s) 402, 470, 653, 773
XceI RCATGY 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.