Rh1AG214500

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016917
Physical Location & Seq
Reverse (-)
40964125 .. 40966959
2835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG214500.1

Sequence Viewer

Length: 810 bp
ATGATGTCCGGAGCAAGAATGAGCTCAAGTTTATCTGATAGCCCCAAGACCACCAAAGCCACCAATAATGGACCACCCTTGTCTGCCAGGACCTTCAGAGGCTCAGCAAAGCCGACCAGTAAGGTGACGCCGCGTGTCGCCGGAGCTTGGAGCATGAGTCCTCTGATGGAGGCTTTACCTGGCTCTCCACCACCTGTTGGTAGCAGTGGCTCCAGCCCTATCAGCTCGTTGAGCTCCAAGACTTGTTCTCCCAAATCAGAGAAGACTAGTTTCTTCTCTGACATGCCTACAAATGCGTCCACCCCAAGAAACCAGGATGGGTTGGAGAATGCCAAAGACTATGGCCGGCTCTGTCTCACCAATTTCCAGAACAATCCTCACAAGGGTTCCTGCCTAAGCAAGCTGTCAATGGCGTCGGATCCTCACCATGAAATTGTTGAGCACCAATCAAACTCAGAGAGAGAGGAGAGGTCTGTTGATGAAGAGGATAGCCATTTGGCATGTGGGGAGCAGAGCACAAATGAAGAATCCGATGGCGGCGGAAGCCCGATTGCCGGAAGAGATAAGCTGATGGAACGGCCGAAGCCGTACCATGAGTTCTTGGATGAAGTCAAGAAGCAGGAGCTGCAGGCTGAGGTTGAGGCATGGAAGAAAGCTGAGCAAATGAGGCTTATGACCAAGTTGAGAAGAGAAGAAGCTGCCATTGAGGAATGGGAATTCAAGCAGACCAGCAAGGCCTTGAAGGACATCAAAAAGCTTGAGGTACGAAATTGTTTGATTACTATTATGTTTTTGGGTCAATCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

269

Amino Acids

29.53

Weight (kDa)

6.62

Isoelectric Point (pI)

59.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 208 - 255 5e-06 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016917)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10780
malus_domestica MD02G1214400.v1.1
prunus_persica Prupe.2G136000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348721
rosa_laevigata RLG00000028627
rosa_multiflora Rmu_co8483933.1_g000001 Rmu_sc0001674.1_g000009
rosa_roxburghii Rroxscaffold_4G00306710
rosa_rugosa Rorug01G0197400
rosa_samantha Rh1AG214500 Rh1BG181100 Rh1CG199200 Rh1DG211100
rosa_wichuraiana Rw1G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AccII CGCG 1 cut(s) 133
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 3 cut(s) 131, 537, 540
AclWI GGATC 2 cut(s) 413, 426
AcoI YGGCCR 2 cut(s) 343, 578
AcsI RAATTY 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 79
AcyI GRCGYC 2 cut(s) 128, 413
AfaI GTAC 2 cut(s) 590, 765
AfiI CCNNNNNNNGG 4 cut(s) 147, 197, 383, 554
AgsI TTSAA 2 cut(s) 721, 742
AhlI ACTAGT 1 cut(s) 266
AjnI CCWGG 3 cut(s) 86, 178, 312
Alw21I GWGCWC 4 cut(s) 26, 236, 444, 518
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 2 cut(s) 413, 426
AlwNI CAGNNNCTG 1 cut(s) 625
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 3 cut(s) 343, 578, 735
ApeKI GCWGC 2 cut(s) 625, 698
ApoI RAATTY 1 cut(s) 716
AspS9I GGNCC 2 cut(s) 71, 90
AsuHPI GGTGA 3 cut(s) 136, 349, 416
AvaII GGWCC 2 cut(s) 71, 90
BamHI GGATCC 1 cut(s) 418
BanII GRGCYC 2 cut(s) 26, 236
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 4 cut(s) 26, 236, 444, 518
BbvCI CCTCAGC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 612, 685
BccI CCATC 4 cut(s) 160, 311, 527, 565
BceAI ACGGC 2 cut(s) 571, 593
BciT130I CCWGG 3 cut(s) 88, 180, 314
BcoDI GTCTC 1 cut(s) 359
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 626
BisI GCNGC 4 cut(s) 131, 538, 626, 699
BlpI GCTNAGC 2 cut(s) 103, 657
BlsI GCNGC 4 cut(s) 132, 539, 627, 700
Bme1390I CCNGG 3 cut(s) 88, 180, 314
Bme18I GGWCC 2 cut(s) 71, 90
BmgT120I GGNCC 2 cut(s) 71, 90
BmiI GGNNCC 3 cut(s) 211, 388, 420
BmrFI CCNGG 3 cut(s) 88, 180, 314
BpiI GAAGAC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 196
Bpu10I CCTNAGC 2 cut(s) 395, 633
Bpu1102I GCTNAGC 2 cut(s) 103, 657
BpuEI CTTGAG 2 cut(s) 10, 779
BsaHI GRCGYC 2 cut(s) 128, 413
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 232, 262
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 197, 383, 554
Bse118I RCCGGY 1 cut(s) 345
Bse1I ACTGG 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 3 cut(s) 88, 180, 314
BseGI GGATG 2 cut(s) 322, 610
BseLI CCNNNNNNNGG 4 cut(s) 147, 197, 383, 554
BseMII CTCAG 4 cut(s) 117, 468, 624, 648
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 479
BseX3I CGGCCG 1 cut(s) 578
BseXI GCAGC 2 cut(s) 612, 685
Bsh1236I CGCG 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 581
BshFI GGCC 3 cut(s) 345, 580, 737
BsiEI CGRYCG 1 cut(s) 581
BsiHKAI GWGCWC 4 cut(s) 26, 236, 444, 518
BsiSI CCGG 4 cut(s) 9, 141, 346, 555
BslI CCNNNNNNNGG 4 cut(s) 147, 197, 383, 554
BsmAI GTCTC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 3 cut(s) 345, 580, 737
Bsp1286I GDGCHC 4 cut(s) 26, 236, 444, 518
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 1 cut(s) 418
Bsp1720I GCTNAGC 2 cut(s) 103, 657
BspACI CCGC 3 cut(s) 131, 537, 540
BspANI GGCC 3 cut(s) 345, 580, 737
BspCNI CTCAG 4 cut(s) 116, 467, 625, 649
BspEI TCCGGA 1 cut(s) 8
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 3 cut(s) 211, 388, 420
BspMAI CTGCAG 1 cut(s) 630
BspPI GGATC 2 cut(s) 413, 426
BsrFI RCCGGY 1 cut(s) 345
BsrI ACTGG 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 345
BssMI GATC 1 cut(s) 418
BssNI GRCGYC 2 cut(s) 128, 413
Bst2UI CCWGG 3 cut(s) 88, 180, 314
Bst6I CTCTTC 3 cut(s) 477, 553, 682
BstACI GRCGYC 2 cut(s) 128, 413
BstAPI GCANNNNNTGC 1 cut(s) 625
BstC8I GCNNGC 3 cut(s) 347, 401, 630
BstDEI CTNAG 5 cut(s) 103, 395, 454, 633, 657
BstF5I GGATG 2 cut(s) 322, 610
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 418
BstMCI CGRYCG 1 cut(s) 581
BstMWI GCNNNNNNNGC 5 cut(s) 222, 231, 543, 625, 667
BstNI CCWGG 3 cut(s) 88, 180, 314
BstNSI RCATGY 2 cut(s) 286, 504
BstSCI CCNGG 3 cut(s) 86, 178, 312
BstSFI CTRYAG 1 cut(s) 626
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 612, 685
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BstZI CGGCCG 1 cut(s) 578
BsuRI GGCC 3 cut(s) 345, 580, 737
BtsCI GGATG 2 cut(s) 322, 610
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 347, 401, 630
CaiI CAGNNNCTG 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 71, 90
CseI GACGC 3 cut(s) 136, 285, 402
Csp6I GTAC 2 cut(s) 589, 764
CviAII CATG 6 cut(s) 154, 283, 428, 501, 593, 645
CviQI GTAC 2 cut(s) 589, 764
DdeI CTNAG 5 cut(s) 103, 395, 454, 633, 657
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
EaeI YGGCCR 2 cut(s) 343, 578
EagI CGGCCG 1 cut(s) 578
Eam1104I CTCTTC 3 cut(s) 477, 553, 682
EarI CTCTTC 3 cut(s) 477, 553, 682
EciI GGCGGA 1 cut(s) 555
Ecl136II GAGCTC 2 cut(s) 24, 234
EclXI CGGCCG 1 cut(s) 578
Eco147I AGGCCT 1 cut(s) 737
Eco24I GRGCYC 2 cut(s) 26, 236
Eco47I GGWCC 2 cut(s) 71, 90
Eco52I CGGCCG 1 cut(s) 578
Eco53kI GAGCTC 2 cut(s) 24, 234
Eco57I CTGAAG 1 cut(s) 79
EcoICRI GAGCTC 2 cut(s) 24, 234
EcoO109I RGGNCCY 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 716
EcoRII CCWGG 3 cut(s) 86, 178, 312
EcoT38I GRGCYC 2 cut(s) 26, 236
FaeI CATG 6 cut(s) 157, 286, 431, 504, 596, 648
FatI CATG 6 cut(s) 153, 282, 427, 500, 592, 644
Fnu4HI GCNGC 4 cut(s) 131, 538, 626, 699
FokI GGATG 2 cut(s) 329, 617
FriOI GRGCYC 2 cut(s) 26, 236
Fsp4HI GCNGC 4 cut(s) 131, 538, 626, 699
FspBI CTAG 1 cut(s) 267
GluI GCNGC 4 cut(s) 131, 538, 626, 699
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 3 cut(s) 345, 580, 737
HapII CCGG 4 cut(s) 9, 141, 346, 555
HgaI GACGC 3 cut(s) 136, 285, 402
Hin1I GRCGYC 2 cut(s) 128, 413
Hin1II CATG 6 cut(s) 157, 286, 431, 504, 596, 648
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 2 cut(s) 157, 527
HpaII CCGG 4 cut(s) 9, 141, 346, 555
HphI GGTGA 3 cut(s) 136, 349, 416
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 8 cut(s) 37, 98, 165, 259, 280, 418, 457, 532
Hpy188III TCNNGA 3 cut(s) 9, 367, 613
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 103, 736
HpyCH4V TGCA 2 cut(s) 628, 806
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 231, 543, 625, 667
HpyF3I CTNAG 5 cut(s) 103, 395, 454, 633, 657
Hsp92I GRCGYC 2 cut(s) 128, 413
Hsp92II CATG 6 cut(s) 157, 286, 431, 504, 596, 648
Kpn2I TCCGGA 1 cut(s) 8
KroI GCCGGC 1 cut(s) 345
KroNI GCCGGC 1 cut(s) 347
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 7 cut(s) 11, 143, 150, 215, 239, 508, 622
Lsp1109I GCAGC 2 cut(s) 612, 685
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 8 cut(s) 265, 274, 494, 536, 570, 661, 699, 704
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 4 cut(s) 26, 236, 444, 518
MluCI AATT 4 cut(s) 361, 432, 716, 769
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 2 cut(s) 303, 396
MroI TCCGGA 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 345
MspI CCGG 4 cut(s) 9, 141, 346, 555
MspR9I CCNGG 3 cut(s) 88, 180, 314
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 3 cut(s) 88, 180, 314
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 5 cut(s) 222, 231, 543, 625, 667
NaeI GCCGGC 1 cut(s) 347
NdeII GATC 1 cut(s) 418
NgoMIV GCCGGC 1 cut(s) 345
NlaIII CATG 6 cut(s) 157, 286, 431, 504, 596, 648
NlaIV GGNNCC 3 cut(s) 211, 388, 420
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 2 cut(s) 286, 504
PceI AGGCCT 1 cut(s) 737
PctI GAATGC 1 cut(s) 334
PdiI GCCGGC 1 cut(s) 347
PfeI GAWTC 1 cut(s) 527
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 4 cut(s) 132, 539, 627, 700
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PpuMI RGGWCCY 1 cut(s) 90
Psp124BI GAGCTC 2 cut(s) 26, 236
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 86, 178, 312
PspGI CCWGG 3 cut(s) 86, 178, 312
PspN4I GGNNCC 3 cut(s) 211, 388, 420
PspPI GGNCC 2 cut(s) 71, 90
PspPPI RGGWCCY 1 cut(s) 90
PsrI GAACNNNNNNTAC 2 cut(s) 581, 613
PstI CTGCAG 1 cut(s) 630
PstNI CAGNNNCTG 1 cut(s) 625
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 2 cut(s) 590, 765
RsaNI GTAC 2 cut(s) 589, 764
SacI GAGCTC 2 cut(s) 26, 236
SatI GCNGC 4 cut(s) 131, 538, 626, 699
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 2 cut(s) 71, 90
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 3 cut(s) 88, 180, 314
SduI GDGCHC 4 cut(s) 26, 236, 444, 518
SfcI CTRYAG 1 cut(s) 626
SinI GGWCC 2 cut(s) 71, 90
SmlI CTYRAG 2 cut(s) 25, 758
SmoI CTYRAG 2 cut(s) 25, 758
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 4 cut(s) 361, 432, 716, 769
SseBI AGGCCT 1 cut(s) 737
SsiI CCGC 3 cut(s) 131, 537, 540
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 2 cut(s) 26, 236
StuI AGGCCT 1 cut(s) 737
StyD4I CCNGG 3 cut(s) 86, 178, 312
TasI AATT 4 cut(s) 361, 432, 716, 769
TauI GCSGC 2 cut(s) 133, 540
TfiI GAWTC 1 cut(s) 527
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 625, 698
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 444, 495, 537, 621
TspRI CASTG 1 cut(s) 211
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 71, 90
XapI RAATTY 1 cut(s) 716
XceI RCATGY 2 cut(s) 286, 504
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.