Rroxscaffold_4G00306710

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016917
Physical Location & Seq
Forward (+)
27670620 .. 27672941
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306710.1

Sequence Viewer

Length: 1086 bp
ATGATGTCCGGAGCAAGAATGAGCTCAAGTTTGTCTGATAGCCCCAAGACCACCAAAGCCACCAATAATGGACCACCCTTGTCTGCCAGGACCTTCAGAGGCTCGGCAAAGCCGACCAGTAAGGTGACGCCGCGTGTCGCCGGAGCTTGGAGCATGAGTCCTCTGATGGAGGCTTTACCTGGCTCTCCACCACCTGTTGGTAGCAGTGGCTCCAGCCCCATCAGCTCGTTGAGCTCCAAGACTTGTTCTCCCAAATCAGAGAAGACTAGTTTTTCTCTGACATGCCTACAAATGCGTCCACACCAAGAAACCAGGTGTAGCCTAAAAGGTTTGTGTGAAGATCTTAAAAGAATGGTTATTCTCTCAAGGGATGGGTTGGAGAATGCCAAAGACTATGGCCGGCTCTGTCTCACCAATTTCCAGAACAATCCTCTCAAGGGTTCCTGCCTGAGCAAGCTGTCAATGGCCTCGGATCCTCACCATGAAATTGTTGTGCACCAATCAAACTCAGAGAGAGAGGAGAGGTCTGTTGACGAAGAGGATAGCCATTTGGCATGTGGAGAGCAGAGCACAAATGAAGAATCCGATGGCGGCGGAAGCCCGATTGCCGGAAGAGATAAGCTGATGGAACGGCCGAAGCCGTACCATGAGTTCTTGGATGAAGTCAAGAAGCAGGAGCTGCAGGCTGAGGTTGAGGCATGGAAGAAAGCCGAGCAAATGAGGCTTATGACCAAGTTGAGAAGAGAAGAAGCTGCCATTGAGGAATGGGAATTCAAGCAGACCAGCAAGGCCTTGAAGGACATCAAAAAGCTTGAGATTAAACTGGAGAAGCAACGTGCAAAAGCAGTGGAAAACACATGGAAGACAATAAGCTTGACCAAAGAGGAGGCAAACAGGAGGAAGATAAGAGCAAGGCAATGCACAATCGGAAGAATATCGGCAGTTTCAGAAAATTATCATAAGTCCAACTCCTCCACCAAGAGCTTAATTTGGAACAAACTCACTGTTTACTGCAAGTCCATGTATTTCAAATCTGTGCGAGGCAAGGTGCCAACCTCATCAGAAAGGCAACGGTCGTTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

361

Amino Acids

40.36

Weight (kDa)

9.5

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 226 - 323 4.8e-11 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016917)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10780
malus_domestica MD02G1214400.v1.1
prunus_persica Prupe.2G136000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348721
rosa_laevigata RLG00000028627
rosa_multiflora Rmu_co8483933.1_g000001 Rmu_sc0001674.1_g000009
rosa_roxburghii Rroxscaffold_4G00306710
rosa_rugosa Rorug01G0197400
rosa_samantha Rh1AG214500 Rh1BG181100 Rh1CG199200 Rh1DG211100
rosa_wichuraiana Rw1G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1048
AccB7I CCANNNNNTGG 1 cut(s) 197
AccII CGCG 1 cut(s) 133
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 3 cut(s) 131, 591, 594
AclWI GGATC 2 cut(s) 467, 480
AcoI YGGCCR 2 cut(s) 397, 632
AcsI RAATTY 1 cut(s) 770
AcuI CTGAAG 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 644
AfiI CCNNNNNNNGG 4 cut(s) 147, 197, 437, 608
AgsI TTSAA 3 cut(s) 775, 796, 1030
AhlI ACTAGT 1 cut(s) 266
AjnI CCWGG 3 cut(s) 86, 178, 311
Alw21I GWGCWC 4 cut(s) 26, 236, 498, 572
Alw26I GTCTC 1 cut(s) 413
Alw44I GTGCAC 1 cut(s) 494
AlwI GGATC 2 cut(s) 467, 480
AlwNI CAGNNNCTG 1 cut(s) 679
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 4 cut(s) 397, 465, 632, 789
ApaLI GTGCAC 1 cut(s) 494
ApeKI GCWGC 2 cut(s) 679, 752
ApoI RAATTY 1 cut(s) 770
AspS9I GGNCC 2 cut(s) 71, 90
AsuHPI GGTGA 3 cut(s) 136, 403, 470
AvaII GGWCC 2 cut(s) 71, 90
BaeGI GKGCMC 1 cut(s) 498
BamHI GGATCC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 1048
BanII GRGCYC 2 cut(s) 26, 236
BbsI GAAGAC 2 cut(s) 269, 869
Bbv12I GWGCWC 4 cut(s) 26, 236, 498, 572
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 2 cut(s) 666, 739
BccI CCATC 5 cut(s) 160, 227, 365, 581, 619
BceAI ACGGC 2 cut(s) 625, 647
BciT130I CCWGG 3 cut(s) 88, 180, 313
BcoDI GTCTC 1 cut(s) 413
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 680
BglII AGATCT 1 cut(s) 340
BisI GCNGC 4 cut(s) 131, 592, 680, 753
BlsI GCNGC 4 cut(s) 132, 593, 681, 754
Bme1390I CCNGG 3 cut(s) 88, 180, 313
Bme18I GGWCC 2 cut(s) 71, 90
BmgT120I GGNCC 2 cut(s) 71, 90
BmiI GGNNCC 4 cut(s) 211, 442, 474, 1050
BmrFI CCNGG 3 cut(s) 88, 180, 313
BpiI GAAGAC 2 cut(s) 269, 869
BpmI CTGGAG 2 cut(s) 196, 845
Bpu10I CCTNAGC 2 cut(s) 449, 687
BpuEI CTTGAG 4 cut(s) 10, 349, 419, 833
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 468
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 232, 262
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 197, 437, 608
Bse118I RCCGGY 1 cut(s) 399
Bse1I ACTGG 2 cut(s) 117, 828
Bse3DI GCAATG 1 cut(s) 923
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 3 cut(s) 88, 180, 313
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 2 cut(s) 376, 664
BseLI CCNNNNNNNGG 4 cut(s) 147, 197, 437, 608
BseMI GCAATG 1 cut(s) 923
BseMII CTCAG 3 cut(s) 440, 522, 678
BseNI ACTGG 2 cut(s) 117, 828
BseRI GAGGAG 3 cut(s) 533, 899, 961
BseSI GKGCMC 1 cut(s) 498
BseX3I CGGCCG 1 cut(s) 632
BseXI GCAGC 2 cut(s) 666, 739
Bsh1236I CGCG 1 cut(s) 133
Bsh1285I CGRYCG 2 cut(s) 635, 1076
BshFI GGCC 4 cut(s) 399, 467, 634, 791
BshNI GGYRCC 1 cut(s) 1048
BsiEI CGRYCG 2 cut(s) 635, 1076
BsiHKAI GWGCWC 4 cut(s) 26, 236, 498, 572
BsiSI CCGG 4 cut(s) 9, 141, 400, 609
BslI CCNNNNNNNGG 4 cut(s) 147, 197, 437, 608
BsmAI GTCTC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 4 cut(s) 399, 467, 634, 791
Bsp1286I GDGCHC 4 cut(s) 26, 236, 498, 572
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 340, 472
BspACI CCGC 3 cut(s) 131, 591, 594
BspANI GGCC 4 cut(s) 399, 467, 634, 791
BspCNI CTCAG 3 cut(s) 441, 521, 679
BspEI TCCGGA 1 cut(s) 8
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 4 cut(s) 211, 442, 474, 1050
BspMAI CTGCAG 1 cut(s) 684
BspPI GGATC 2 cut(s) 467, 480
BspT107I GGYRCC 1 cut(s) 1048
BsrDI GCAATG 1 cut(s) 923
BsrFI RCCGGY 1 cut(s) 399
BsrI ACTGG 2 cut(s) 117, 828
BssAI RCCGGY 1 cut(s) 399
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 2 cut(s) 340, 472
BssNI GRCGYC 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 88, 180, 313
Bst4CI ACNGT 2 cut(s) 1006, 1074
Bst6I CTCTTC 3 cut(s) 531, 607, 736
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 679
BstC8I GCNNGC 3 cut(s) 401, 455, 684
BstDEI CTNAG 3 cut(s) 449, 508, 687
BstF5I GGATG 2 cut(s) 376, 664
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 2 cut(s) 343, 475
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 2 cut(s) 340, 472
BstMCI CGRYCG 2 cut(s) 635, 1076
BstMWI GCNNNNNNNGC 5 cut(s) 222, 231, 597, 679, 721
BstNI CCWGG 3 cut(s) 88, 180, 313
BstNSI RCATGY 2 cut(s) 285, 558
BstSCI CCNGG 3 cut(s) 86, 178, 311
BstSFI CTRYAG 1 cut(s) 680
BstSLI GKGCMC 1 cut(s) 498
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 666, 739
BstV2I GAAGAC 2 cut(s) 269, 869
BstX2I RGATCY 2 cut(s) 340, 472
BstYI RGATCY 2 cut(s) 340, 472
BstZI CGGCCG 1 cut(s) 632
BsuRI GGCC 4 cut(s) 399, 467, 634, 791
BtsCI GGATG 2 cut(s) 376, 664
BtsI GCAGTG 2 cut(s) 211, 852
BtsIMutI CAGTG 3 cut(s) 211, 852, 1002
Cac8I GCNNGC 3 cut(s) 401, 455, 684
CaiI CAGNNNCTG 1 cut(s) 679
Cfr10I RCCGGY 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 71, 90
CseI GACGC 2 cut(s) 136, 284
CsiI ACCWGGT 1 cut(s) 311
Csp6I GTAC 1 cut(s) 643
CspCI CAANNNNNGTGG 2 cut(s) 828, 863
CviAII CATG 8 cut(s) 154, 282, 482, 555, 647, 699, 858, 1021
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 3 cut(s) 449, 508, 687
DpnI GATC 2 cut(s) 342, 474
DpnII GATC 2 cut(s) 340, 472
EaeI YGGCCR 2 cut(s) 397, 632
EagI CGGCCG 1 cut(s) 632
Eam1104I CTCTTC 3 cut(s) 531, 607, 736
EarI CTCTTC 3 cut(s) 531, 607, 736
EciI GGCGGA 1 cut(s) 609
Ecl136II GAGCTC 2 cut(s) 24, 234
EclXI CGGCCG 1 cut(s) 632
Eco147I AGGCCT 1 cut(s) 791
Eco24I GRGCYC 2 cut(s) 26, 236
Eco47I GGWCC 2 cut(s) 71, 90
Eco52I CGGCCG 1 cut(s) 632
Eco53kI GAGCTC 2 cut(s) 24, 234
Eco57I CTGAAG 1 cut(s) 79
EcoICRI GAGCTC 2 cut(s) 24, 234
EcoO109I RGGNCCY 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 770
EcoRII CCWGG 3 cut(s) 86, 178, 311
EcoT38I GRGCYC 2 cut(s) 26, 236
FaeI CATG 8 cut(s) 157, 285, 485, 558, 650, 702, 861, 1024
FatI CATG 8 cut(s) 153, 281, 481, 554, 646, 698, 857, 1020
Fnu4HI GCNGC 4 cut(s) 131, 592, 680, 753
FokI GGATG 2 cut(s) 383, 671
FriOI GRGCYC 2 cut(s) 26, 236
Fsp4HI GCNGC 4 cut(s) 131, 592, 680, 753
FspBI CTAG 1 cut(s) 267
GluI GCNGC 4 cut(s) 131, 592, 680, 753
GsuI CTGGAG 2 cut(s) 196, 845
HaeIII GGCC 4 cut(s) 399, 467, 634, 791
HapII CCGG 4 cut(s) 9, 141, 400, 609
HgaI GACGC 2 cut(s) 136, 284
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 8 cut(s) 157, 285, 485, 558, 650, 702, 861, 1024
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 2 cut(s) 809, 871
HinfI GANTC 2 cut(s) 157, 581
HpaII CCGG 4 cut(s) 9, 141, 400, 609
HphI GGTGA 3 cut(s) 136, 403, 470
Hpy166II GTNNAC 4 cut(s) 299, 496, 532, 1009
Hpy188III TCNNGA 3 cut(s) 9, 421, 667
Hpy8I GTNNAC 4 cut(s) 299, 496, 532, 1009
HpyAV CCTTC 2 cut(s) 103, 790
HpyCH4III ACNGT 2 cut(s) 1006, 1074
HpyCH4IV ACGT 1 cut(s) 835
HpyCH4V TGCA 5 cut(s) 496, 682, 839, 921, 1014
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 231, 597, 679, 721
HpyF3I CTNAG 3 cut(s) 449, 508, 687
HpySE526I ACGT 1 cut(s) 835
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 8 cut(s) 157, 285, 485, 558, 650, 702, 861, 1024
Kpn2I TCCGGA 1 cut(s) 8
KroI GCCGGC 1 cut(s) 399
KroNI GCCGGC 1 cut(s) 401
Kzo9I GATC 2 cut(s) 340, 472
LmnI GCTCC 6 cut(s) 11, 143, 150, 215, 239, 676
Lsp1109I GCAGC 2 cut(s) 666, 739
MabI ACCWGGT 1 cut(s) 311
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 835
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 342, 474
MboI GATC 2 cut(s) 340, 472
MflI RGATCY 2 cut(s) 340, 472
MhlI GDGCHC 4 cut(s) 26, 236, 498, 572
MluCI AATT 5 cut(s) 415, 486, 770, 952, 987
MlyI GAGTC 1 cut(s) 166
MmeI TCCRAC 2 cut(s) 357, 990
MroI TCCGGA 1 cut(s) 8
MroNI GCCGGC 1 cut(s) 399
MseI TTAA 4 cut(s) 345, 819, 986, 1079
MspI CCGG 4 cut(s) 9, 141, 400, 609
MspR9I CCNGG 3 cut(s) 88, 180, 313
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 3 cut(s) 88, 180, 313
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 5 cut(s) 222, 231, 597, 679, 721
NaeI GCCGGC 1 cut(s) 401
NdeII GATC 2 cut(s) 340, 472
NgoMIV GCCGGC 1 cut(s) 399
NlaIII CATG 8 cut(s) 157, 285, 485, 558, 650, 702, 861, 1024
NlaIV GGNNCC 4 cut(s) 211, 442, 474, 1050
NmeAIII GCCGAG 2 cut(s) 83, 736
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 2 cut(s) 285, 558
PceI AGGCCT 1 cut(s) 791
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 1 cut(s) 388
PdiI GCCGGC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 581
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 4 cut(s) 132, 593, 681, 754
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PpuMI RGGWCCY 1 cut(s) 90
Psp124BI GAGCTC 2 cut(s) 26, 236
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 86, 178, 311
PspGI CCWGG 3 cut(s) 86, 178, 311
PspN4I GGNNCC 4 cut(s) 211, 442, 474, 1050
PspPI GGNCC 2 cut(s) 71, 90
PspPPI RGGWCCY 1 cut(s) 90
PsrI GAACNNNNNNTAC 2 cut(s) 635, 667
PstI CTGCAG 1 cut(s) 684
PstNI CAGNNNCTG 1 cut(s) 679
PsuI RGATCY 2 cut(s) 340, 472
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
SacI GAGCTC 2 cut(s) 26, 236
SaqAI TTAA 4 cut(s) 345, 819, 986, 1079
SatI GCNGC 4 cut(s) 131, 592, 680, 753
Sau3AI GATC 2 cut(s) 340, 472
Sau96I GGNCC 2 cut(s) 71, 90
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 3 cut(s) 88, 180, 313
SduI GDGCHC 4 cut(s) 26, 236, 498, 572
SexAI ACCWGGT 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 680
SinI GGWCC 2 cut(s) 71, 90
SmlI CTYRAG 4 cut(s) 25, 364, 434, 812
SmoI CTYRAG 4 cut(s) 25, 364, 434, 812
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 5 cut(s) 415, 486, 770, 952, 987
SseBI AGGCCT 1 cut(s) 791
SsiI CCGC 3 cut(s) 131, 591, 594
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 2 cut(s) 26, 236
StuI AGGCCT 1 cut(s) 791
StyD4I CCNGG 3 cut(s) 86, 178, 311
TaaI ACNGT 2 cut(s) 1006, 1074
TaiI ACGT 1 cut(s) 838
TasI AATT 5 cut(s) 415, 486, 770, 952, 987
TauI GCSGC 2 cut(s) 133, 594
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 4 cut(s) 345, 819, 986, 1079
Tru9I TTAA 4 cut(s) 345, 819, 986, 1079
TscAI CASTG 3 cut(s) 211, 852, 1009
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 679, 752
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 498, 591, 675
TspRI CASTG 3 cut(s) 211, 852, 1009
Van91I CCANNNNNTGG 1 cut(s) 197
VneI GTGCAC 1 cut(s) 494
VpaK11BI GGWCC 2 cut(s) 71, 90
XapI RAATTY 1 cut(s) 770
XceI RCATGY 2 cut(s) 285, 558
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.