MD02G1214400.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016917
Physical Location & Seq
Reverse (-)
23841385 .. 23844190
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1214400.v1.1.491

Sequence Viewer

Length: 945 bp
ATGTCCAGGACAGAAACAAGCCCAAGTTTCTCCAATACCAGTAACACGAGGACCAAACCCAATTCGAATGCTGCATCAACGTCACCGTTTGATAAAACTCCTGACTCTCCTCATCCCTTGTCAGCCAGAACCTTCAAAAACCCAAGGGCAACTTGGAGCATGAAGCCTCTCAAGGATGCTTTGCCAGGATCTCCACCACCATTTTGTAGCGGTGGCTCCAGCCCTCTCAGCAGCTCTGCCACATTATGTACTCCCATATCAGATAGTTTCTACTCTGACTTGCCCACCACTGAGTTTTCAACTCCAAGAAACAAGGGCATAATTTCTGGTTTTGAAGTAAAAGAAGGGATGGAGAGTAGTGCCAAAGGCTTTGGTCGTTTTTGTCAACCCAAATTGCTGAACAACAGTCCTAAAGGTTACTGCCTGAGCAAGTTATCGATGCATGAAACTGTGTTTTCAGATCCTAACCGTACATTTGATCTTGGCCGGGAATCACCTTCAGAAAGAGAAGAGAGCTCAGTTTATAATGAAGAGTATAAACATATTGTACCTTCCGCTGATCAGAGCAGCGATGAAGAATCTGATGGCAGAAGCCTGAATTTCCGAACGGATAAGCTTATGGATAGGCCAAAGCCGTACCATGAATTCTTAGATGAAGTCAAGAACCAGGAGCTCAAGGCTGAAATAAAGGCATGGAAAAAGGCTGAGCATATGAGACTCATGACCAGGTTGAGAAAAGAAGAAGCTGCTATAGATGACTGGGAATTCAAGCAGACCAGCAAGGCCTTGAAGGAGATTAAAAAGCTTGAGTGCACCTACTACTTGAATTTTAAAATGTTAGATTGCATTACAAAAAAGCTAGATGGAAATAAGGATTTCACGAAGAAAAAAACTCTAAAATCATGGCTATTTATACTCAACGAAATTCATCATTATAGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

315

Amino Acids

35.75

Weight (kDa)

8.71

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 224 - 270 1.1e-07 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016917)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g10780
malus_domestica MD02G1214400.v1.1
prunus_persica Prupe.2G136000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348721
rosa_laevigata RLG00000028627
rosa_multiflora Rmu_co8483933.1_g000001 Rmu_sc0001674.1_g000009
rosa_roxburghii Rroxscaffold_4G00306710
rosa_rugosa Rorug01G0197400
rosa_samantha Rh1AG214500 Rh1BG181100 Rh1CG199200 Rh1DG211100
rosa_wichuraiana Rw1G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AciI CCGC 2 cut(s) 210, 555
AclWI GGATC 2 cut(s) 196, 455
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 5 cut(s) 598, 644, 764, 826, 924
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 4 cut(s) 250, 472, 549, 638
AgsI TTSAA 6 cut(s) 136, 300, 335, 769, 790, 826
AjnI CCWGG 4 cut(s) 5, 184, 666, 725
AluBI AGCT 7 cut(s) 234, 516, 616, 673, 746, 805, 859
AluI AGCT 7 cut(s) 234, 516, 616, 673, 746, 805, 859
Alw21I GWGCWC 3 cut(s) 518, 675, 815
Alw26I GTCTC 1 cut(s) 709
Alw44I GTGCAC 1 cut(s) 811
AlwI GGATC 2 cut(s) 196, 455
AoxI GGCC 3 cut(s) 484, 626, 783
ApaLI GTGCAC 1 cut(s) 811
ApeKI GCWGC 4 cut(s) 71, 231, 567, 746
ApoI RAATTY 5 cut(s) 598, 644, 764, 826, 924
AspS9I GGNCC 1 cut(s) 51
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 2 cut(s) 75, 486
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 815
BanII GRGCYC 2 cut(s) 518, 675
BauI CACGAG 1 cut(s) 46
Bbv12I GWGCWC 3 cut(s) 518, 675, 815
BbvI GCAGC 4 cut(s) 58, 243, 579, 733
BccI CCATC 3 cut(s) 343, 578, 857
BceAI ACGGC 1 cut(s) 619
BciT130I CCWGG 4 cut(s) 7, 186, 668, 727
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 1 cut(s) 860
BfmI CTRYAG 1 cut(s) 750
BisI GCNGC 4 cut(s) 72, 232, 568, 747
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 4 cut(s) 73, 233, 569, 748
Bme1390I CCNGG 5 cut(s) 7, 186, 488, 668, 727
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 5 cut(s) 7, 186, 488, 668, 727
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 3 cut(s) 83, 166, 429
BmuI ACTGGG 1 cut(s) 769
BpmI CTGGAG 1 cut(s) 202
Bpu10I CCTNAGC 1 cut(s) 425
Bpu1102I GCTNAGC 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 3 cut(s) 155, 659, 827
BpuMI CCSGG 1 cut(s) 488
Bsa29I ATCGAT 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 39, 764
BseBI CCWGG 4 cut(s) 7, 186, 668, 727
BseCI ATCGAT 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 3 cut(s) 112, 181, 354
BseMII CTCAG 5 cut(s) 241, 282, 416, 531, 696
BseNI ACTGG 2 cut(s) 39, 764
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 815
BseXI GCAGC 4 cut(s) 58, 243, 579, 733
BshFI GGCC 3 cut(s) 486, 628, 785
BshVI ATCGAT 1 cut(s) 437
BsiHKAI GWGCWC 3 cut(s) 518, 675, 815
BsiSI CCGG 1 cut(s) 487
BsmAI GTCTC 1 cut(s) 709
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 3 cut(s) 486, 628, 785
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 518, 675, 815
Bsp143I GATC 4 cut(s) 188, 460, 478, 559
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 2 cut(s) 210, 555
BspANI GGCC 3 cut(s) 486, 628, 785
BspCNI CTCAG 5 cut(s) 240, 283, 417, 530, 697
BspDI ATCGAT 1 cut(s) 437
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 2 cut(s) 196, 455
BspT104I TTCGAA 1 cut(s) 65
BsrI ACTGG 2 cut(s) 39, 764
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 4 cut(s) 188, 460, 478, 559
BssSI CACGAG 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 46
Bst2UI CCWGG 4 cut(s) 7, 186, 668, 727
Bst4CI ACNGT 4 cut(s) 87, 407, 451, 470
Bst6I CTCTTC 2 cut(s) 504, 525
BstBI TTCGAA 1 cut(s) 65
BstDEI CTNAG 6 cut(s) 227, 291, 425, 517, 649, 705
BstF5I GGATG 3 cut(s) 112, 181, 354
BstKTI GATC 4 cut(s) 191, 463, 481, 562
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 4 cut(s) 188, 460, 478, 559
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 4 cut(s) 7, 186, 668, 727
BstSCI CCNGG 5 cut(s) 5, 184, 486, 666, 725
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 815
BstV1I GCAGC 4 cut(s) 58, 243, 579, 733
BstX2I RGATCY 2 cut(s) 188, 460
BstYI RGATCY 2 cut(s) 188, 460
Bsu15I ATCGAT 1 cut(s) 437
BsuRI GGCC 3 cut(s) 486, 628, 785
BsuTUI ATCGAT 1 cut(s) 437
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 3 cut(s) 112, 181, 354
BtsIMutI CAGTG 1 cut(s) 288
CciI TCATGA 1 cut(s) 720
Cfr13I GGNCC 1 cut(s) 51
ClaI ATCGAT 1 cut(s) 437
CsiI ACCWGGT 1 cut(s) 725
Csp6I GTAC 4 cut(s) 249, 471, 548, 637
CviAII CATG 6 cut(s) 160, 443, 641, 693, 721, 903
CviQI GTAC 4 cut(s) 249, 471, 548, 637
DdeI CTNAG 6 cut(s) 227, 291, 425, 517, 649, 705
DpnI GATC 4 cut(s) 190, 462, 480, 561
DpnII GATC 4 cut(s) 188, 460, 478, 559
DraI TTTAAA 1 cut(s) 832
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 2 cut(s) 504, 525
EarI CTCTTC 2 cut(s) 504, 525
Ecl136II GAGCTC 2 cut(s) 516, 673
Eco130I CCWWGG 1 cut(s) 143
Eco147I AGGCCT 1 cut(s) 785
Eco24I GRGCYC 2 cut(s) 518, 675
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 2 cut(s) 516, 673
Eco57I CTGAAG 1 cut(s) 483
EcoICRI GAGCTC 2 cut(s) 516, 673
EcoRI GAATTC 2 cut(s) 644, 764
EcoRII CCWGG 4 cut(s) 5, 184, 666, 725
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 444
EcoT38I GRGCYC 2 cut(s) 518, 675
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 6 cut(s) 163, 446, 644, 696, 724, 906
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FatI CATG 6 cut(s) 159, 442, 640, 692, 720, 902
FauNDI CATATG 1 cut(s) 711
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 4 cut(s) 72, 232, 568, 747
FokI GGATG 3 cut(s) 99, 188, 361
FriOI GRGCYC 2 cut(s) 518, 675
Fsp4HI GCNGC 4 cut(s) 72, 232, 568, 747
FspBI CTAG 1 cut(s) 860
GluI GCNGC 4 cut(s) 72, 232, 568, 747
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 3 cut(s) 486, 628, 785
HapII CCGG 1 cut(s) 487
Hin1II CATG 6 cut(s) 163, 446, 644, 696, 724, 906
HincII GTYRAC 1 cut(s) 386
HindII GTYRAC 1 cut(s) 386
HindIII AAGCTT 2 cut(s) 614, 803
HinfI GANTC 4 cut(s) 104, 491, 578, 717
HpaII CCGG 1 cut(s) 487
HphI GGTGA 2 cut(s) 75, 486
Hpy166II GTNNAC 2 cut(s) 386, 813
Hpy188I TCNGA 7 cut(s) 262, 277, 460, 502, 564, 583, 605
Hpy188III TCNNGA 4 cut(s) 101, 661, 721, 880
Hpy8I GTNNAC 2 cut(s) 386, 813
HpyAV CCTTC 5 cut(s) 142, 338, 507, 561, 784
HpyCH4III ACNGT 4 cut(s) 87, 407, 451, 470
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 74, 442, 813, 846
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 6 cut(s) 227, 291, 425, 517, 649, 705
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 6 cut(s) 163, 446, 644, 696, 724, 906
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 4 cut(s) 188, 460, 478, 559
LmnI GCTCC 3 cut(s) 156, 221, 670
Lsp1109I GCAGC 4 cut(s) 58, 243, 579, 733
LweI GCATC 3 cut(s) 83, 166, 429
MabI ACCWGGT 1 cut(s) 725
MaeI CTAG 1 cut(s) 860
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 3 cut(s) 41, 81, 416
MalI GATC 4 cut(s) 190, 462, 480, 561
MboI GATC 4 cut(s) 188, 460, 478, 559
MboII GAAGA 5 cut(s) 521, 542, 587, 752, 895
MflI RGATCY 2 cut(s) 188, 460
MhlI GDGCHC 3 cut(s) 518, 675, 815
MluCI AATT 8 cut(s) 61, 321, 392, 598, 644, 764, 826, 924
MlyI GAGTC 2 cut(s) 98, 711
MnlI CCTC 4 cut(s) 42, 120, 177, 234
Mph1103I ATGCAT 1 cut(s) 444
MseI TTAA 2 cut(s) 798, 831
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 5 cut(s) 7, 186, 488, 668, 727
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 4 cut(s) 7, 186, 668, 727
MwoI GCNNNNNNNGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 488
NdeI CATATG 1 cut(s) 711
NdeII GATC 4 cut(s) 188, 460, 478, 559
NlaIII CATG 6 cut(s) 163, 446, 644, 696, 724, 906
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 81
NsiI ATGCAT 1 cut(s) 444
NspV TTCGAA 1 cut(s) 65
PagI TCATGA 1 cut(s) 720
PceI AGGCCT 1 cut(s) 785
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 491, 578
PfoI TCCNGGA 1 cut(s) 5
PkrI GCNGC 4 cut(s) 73, 233, 569, 748
PleI GAGTC 2 cut(s) 98, 711
PpsI GAGTC 2 cut(s) 98, 711
PsiI TTATAA 1 cut(s) 525
Psp124BI GAGCTC 2 cut(s) 518, 675
Psp6I CCWGG 4 cut(s) 5, 184, 666, 725
PspGI CCWGG 4 cut(s) 5, 184, 666, 725
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 51
PsuI RGATCY 2 cut(s) 188, 460
RsaI GTAC 4 cut(s) 250, 472, 549, 638
RsaNI GTAC 4 cut(s) 249, 471, 548, 637
SacI GAGCTC 2 cut(s) 518, 675
SaqAI TTAA 2 cut(s) 798, 831
SatI GCNGC 4 cut(s) 72, 232, 568, 747
Sau3AI GATC 4 cut(s) 188, 460, 478, 559
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 2 cut(s) 98, 711
ScrFI CCNGG 5 cut(s) 7, 186, 488, 668, 727
SduI GDGCHC 3 cut(s) 518, 675, 815
SexAI ACCWGGT 1 cut(s) 725
SfaNI GCATC 3 cut(s) 83, 166, 429
SfcI CTRYAG 1 cut(s) 750
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 3 cut(s) 170, 674, 806
SmoI CTYRAG 3 cut(s) 170, 674, 806
Sse9I AATT 8 cut(s) 61, 321, 392, 598, 644, 764, 826, 924
SseBI AGGCCT 1 cut(s) 785
SsiI CCGC 2 cut(s) 210, 555
SspMI CTAG 1 cut(s) 860
SstI GAGCTC 2 cut(s) 518, 675
StuI AGGCCT 1 cut(s) 785
StyD4I CCNGG 5 cut(s) 5, 184, 486, 666, 725
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 4 cut(s) 87, 407, 451, 470
TaiI ACGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 65, 437
TasI AATT 8 cut(s) 61, 321, 392, 598, 644, 764, 826, 924
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 2 cut(s) 491, 578
Tru1I TTAA 2 cut(s) 798, 831
Tru9I TTAA 2 cut(s) 798, 831
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 4 cut(s) 71, 231, 567, 746
Tsp45I GTSAC 1 cut(s) 81
TspDTI ATGAA 7 cut(s) 176, 459, 543, 588, 657, 669, 917
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 1 cut(s) 295
VneI GTGCAC 1 cut(s) 811
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 5 cut(s) 598, 644, 764, 826, 924
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XspI CTAG 1 cut(s) 860
Zsp2I ATGCAT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.